Wall clock time and date at job start Wed Apr 1 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 120.00163 * 2 1 4 4 C 1.34773 * 119.99992 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00263 * 4.05469 * 4 2 1 6 6 C 1.47602 * 120.00189 * 184.05332 * 4 2 1 7 7 C 1.40287 * 120.48402 * 131.09670 * 6 4 2 8 8 C 1.36930 * 118.48670 * 180.02562 * 7 6 4 9 9 C 1.39278 * 119.37929 * 0.02562 * 8 7 6 10 10 N 1.38930 * 119.52867 * 180.02562 * 9 8 7 11 11 C 1.34777 * 120.00388 * 22.00725 * 10 9 8 12 12 O 1.21566 * 119.99791 * 357.34420 * 11 10 9 13 13 N 1.34780 * 120.00193 * 177.33423 * 11 10 9 14 14 C 1.46962 * 120.59381 * 4.97000 * 13 11 10 15 15 C 1.53812 * 108.39744 * 124.75152 * 14 13 11 16 16 N 1.46970 * 108.57400 * 49.63947 * 15 14 13 17 17 C 1.36945 * 120.59154 * 124.62698 * 16 15 14 18 18 H 1.07997 * 119.99699 * 212.33311 * 17 16 15 19 19 C 1.38810 * 119.99860 * 32.32923 * 17 16 15 20 20 N 1.31612 * 120.00299 * 11.46323 * 19 17 16 21 21 Si 1.86807 * 119.99374 * 191.46373 * 19 17 16 22 22 H 1.48499 * 109.47248 * 90.00170 * 21 19 17 23 23 H 1.48503 * 109.46576 * 209.99762 * 21 19 17 24 24 H 1.48502 * 109.47252 * 329.99464 * 21 19 17 25 25 C 1.46960 * 118.81462 * 304.64080 * 16 15 14 26 26 C 1.46962 * 120.58986 * 185.24886 * 13 11 10 27 27 N 1.32533 * 120.93744 * 0.27123 * 9 8 7 28 28 C 1.31673 * 121.64936 * 359.43536 * 27 9 8 29 29 H 1.08997 * 109.47612 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47068 * 300.00047 * 1 2 3 31 31 H 1.09003 * 109.47429 * 59.99411 * 1 2 3 32 32 H 1.08994 * 109.47047 * 266.37253 * 3 2 1 33 33 H 1.08996 * 109.46814 * 26.37296 * 3 2 1 34 34 H 1.09002 * 109.46774 * 146.37292 * 3 2 1 35 35 H 1.08001 * 120.75630 * 0.02562 * 7 6 4 36 36 H 1.07999 * 120.31140 * 180.02562 * 8 7 6 37 37 H 0.97004 * 119.99911 * 202.28702 * 10 9 8 38 38 H 1.08996 * 109.61120 * 244.54103 * 14 13 11 39 39 H 1.09004 * 109.60827 * 5.05499 * 14 13 11 40 40 H 1.09003 * 109.74722 * 289.85445 * 15 14 13 41 41 H 1.08995 * 109.53303 * 169.30163 * 15 14 13 42 42 H 0.97006 * 119.99824 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.61309 * 295.48572 * 25 16 15 44 44 H 1.09004 * 109.75335 * 175.05377 * 25 16 15 45 45 H 1.08995 * 109.61198 * 354.94945 * 26 13 11 46 46 H 1.08998 * 109.60712 * 115.29241 * 26 13 11 47 47 H 1.08004 * 119.74223 * 180.26356 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5332 -2.2189 -0.0754 6 6 3.6120 -1.1689 0.0898 7 6 4.2674 -1.9964 1.0137 8 6 5.6355 -1.9650 1.0631 9 6 6.3310 -1.1192 0.2025 10 7 7.7191 -1.0852 0.2496 11 6 8.4018 -2.1278 0.7628 12 8 7.8019 -3.0770 1.2286 13 7 9.7495 -2.1181 0.7595 14 6 10.4879 -0.9334 0.3000 15 6 11.4508 -0.4979 1.4176 16 7 12.2083 -1.6741 1.8677 17 6 13.5777 -1.6646 1.8635 18 1 14.1235 -2.5777 1.6773 19 6 14.2642 -0.4813 2.0987 20 7 13.6198 0.5758 2.5453 21 14 16.1028 -0.3893 1.7810 22 1 16.3422 0.0405 0.3799 23 1 16.7173 0.5914 2.7115 24 1 16.7104 -1.7267 1.9994 25 6 11.4700 -2.8608 2.3219 26 6 10.5070 -3.2943 1.2096 27 7 5.6873 -0.3428 -0.6574 28 6 4.3733 -0.3461 -0.7416 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.4355 1.5509 -1.0255 33 1 1.5818 2.0437 0.4565 34 1 3.1202 1.1555 0.5691 35 1 3.7058 -2.6436 1.6711 36 1 6.1702 -2.5902 1.7628 37 1 8.1968 -0.3093 -0.0832 38 1 11.0536 -1.1806 -0.5983 39 1 9.7873 -0.1268 0.0839 40 1 10.8837 -0.0865 2.2527 41 1 12.1387 0.2551 1.0331 42 1 14.0996 1.4028 2.7093 43 1 10.9043 -2.6177 3.2213 44 1 12.1686 -3.6696 2.5366 45 1 9.8191 -4.0473 1.5941 46 1 11.0717 -3.7075 0.3738 47 1 3.8805 0.2962 -1.4565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673573424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:52 Heat of formation + Delta-G solvation = 19.727965 kcal Electronic energy + Delta-G solvation = -30200.790732 eV Core-core repulsion = 25999.259077 eV Total energy + Delta-G solvation = -4201.531655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.42449 -41.39093 -40.12589 -38.62972 -36.66599 -36.22263 -35.69729 -33.68812 -33.26825 -31.93961 -31.56250 -28.99981 -28.51815 -27.35029 -25.73836 -25.00747 -24.73574 -24.14556 -22.56060 -21.04471 -20.80950 -19.99235 -19.03753 -18.53888 -18.05585 -17.67577 -17.29043 -17.08653 -16.72856 -16.44755 -16.24208 -15.68786 -15.46308 -15.39308 -15.24019 -15.11449 -15.00245 -14.90292 -14.34606 -14.25693 -14.13242 -13.78791 -13.40638 -13.33358 -13.24726 -13.11197 -12.93486 -12.69357 -12.50920 -12.21972 -12.07366 -11.97582 -11.90685 -11.69706 -11.57283 -11.08271 -10.96317 -10.63801 -10.56976 -10.01173 -9.75397 -9.38384 -8.60043 -7.87998 -5.41722 -0.38050 0.18039 1.18425 1.45077 1.50072 1.51787 1.59791 1.82061 1.99297 2.46835 2.54156 2.69384 3.28062 3.35901 3.43619 3.59026 3.72617 3.75880 4.05385 4.18860 4.22579 4.25872 4.28591 4.45441 4.51012 4.51826 4.59331 4.63732 4.71959 4.74890 4.78321 4.82124 4.92078 4.94137 4.97328 5.06799 5.12634 5.23364 5.36765 5.44391 5.59683 5.63087 5.65642 5.71264 6.18959 6.39033 6.44667 6.82657 6.98065 7.12895 7.19848 7.78516 8.33288 9.16740 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028288 B = 0.001990 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.594114 B =14066.717858 C =14693.883910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.066 3.934 4 C 0.568 3.432 5 O -0.578 6.578 6 C -0.220 4.220 7 C -0.008 4.008 8 C -0.201 4.201 9 C 0.385 3.615 10 N -0.657 5.657 11 C 0.710 3.290 12 O -0.597 6.597 13 N -0.606 5.606 14 C 0.096 3.904 15 C 0.166 3.834 16 N -0.608 5.608 17 C -0.264 4.264 18 H 0.069 0.931 19 C -0.044 4.044 20 N -0.934 5.934 21 Si 0.969 3.031 22 H -0.282 1.282 23 H -0.298 1.298 24 H -0.271 1.271 25 C 0.131 3.869 26 C 0.122 3.878 27 N -0.522 5.522 28 C 0.172 3.828 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.423 0.577 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.000 1.000 41 H 0.076 0.924 42 H 0.252 0.748 43 H 0.011 0.989 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.012 3.781 -7.322 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.343 5.343 3 C -0.076 4.076 4 C 0.356 3.644 5 O -0.458 6.458 6 C -0.227 4.227 7 C -0.034 4.034 8 C -0.223 4.223 9 C 0.154 3.846 10 N -0.306 5.306 11 C 0.411 3.589 12 O -0.477 6.477 13 N -0.340 5.340 14 C -0.028 4.028 15 C 0.039 3.961 16 N -0.331 5.331 17 C -0.394 4.394 18 H 0.087 0.913 19 C -0.240 4.240 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.209 1.209 23 H -0.225 1.225 24 H -0.195 1.195 25 C 0.005 3.995 26 C -0.002 4.002 27 N -0.237 5.237 28 C 0.013 3.987 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.181 0.819 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.018 0.982 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -22.047 3.261 -7.509 23.517 hybrid contribution 0.976 0.087 0.623 1.161 sum -21.071 3.348 -6.886 22.419 Atomic orbital electron populations 1.21877 0.77547 1.03651 1.03524 1.47772 1.08164 1.06289 1.72051 1.22245 0.97690 0.83998 1.03658 1.18169 0.86732 0.83774 0.75680 1.90776 1.70349 1.32772 1.51943 1.20742 0.94113 1.03827 1.04029 1.21346 0.93419 0.93605 0.95023 1.22306 0.94737 1.02987 1.02311 1.18328 0.83764 0.92328 0.90175 1.42380 1.04081 1.20912 1.63269 1.15713 0.82146 0.82042 0.78961 1.90746 1.67311 1.36626 1.53024 1.47311 1.02546 1.17779 1.66408 1.22574 0.95170 0.86365 0.98681 1.21057 0.92313 0.89973 0.92717 1.44174 1.02069 1.12595 1.74268 1.19497 0.82436 0.95568 1.41879 0.91322 1.25903 1.01844 0.97265 0.98944 1.70099 1.36532 1.02657 1.48598 0.85250 0.80412 0.77403 0.77210 1.20873 1.22474 1.19549 1.21403 0.93753 0.90642 0.93727 1.22057 0.93769 0.86214 0.98148 1.67186 1.11230 1.24781 1.20454 1.23154 0.86922 0.93491 0.95149 0.91582 0.90027 0.89754 0.89950 0.88187 0.91368 0.83501 0.81927 0.73612 0.90344 0.88749 0.98161 0.90592 0.93909 0.97146 0.90563 0.88834 0.90542 0.78549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.67 127.77 1.36 2.15 16 2 N -0.61 -8.55 3.27 -875.64 -2.87 -11.41 16 3 C 0.07 0.47 9.11 127.77 1.16 1.63 16 4 C 0.57 12.40 7.25 86.72 0.63 13.03 16 5 O -0.58 -17.24 16.37 -4.01 -0.07 -17.31 16 6 C -0.22 -4.73 4.89 -19.99 -0.10 -4.83 16 7 C -0.01 -0.18 9.82 22.46 0.22 0.04 16 8 C -0.20 -5.56 8.78 22.21 0.19 -5.37 16 9 C 0.38 10.42 7.48 133.08 1.00 11.42 16 10 N -0.66 -17.92 5.31 -322.28 -1.71 -19.63 16 11 C 0.71 23.00 8.18 179.05 1.47 24.46 16 12 O -0.60 -21.79 12.46 -3.92 -0.05 -21.84 16 13 N -0.61 -19.81 2.94 -835.17 -2.46 -22.27 16 14 C 0.10 3.06 6.58 86.57 0.57 3.63 16 15 C 0.17 7.16 5.47 86.56 0.47 7.64 16 16 N -0.61 -28.26 2.95 -697.32 -2.06 -30.32 16 17 C -0.26 -13.48 9.57 84.03 0.80 -12.68 16 18 H 0.07 3.42 7.85 -2.91 -0.02 3.40 16 19 C -0.04 -2.28 5.02 84.86 0.43 -1.85 16 20 N -0.93 -51.75 11.14 21.65 0.24 -51.51 16 21 Si 0.97 42.33 29.57 68.60 2.03 44.36 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 C 0.13 5.16 6.67 86.42 0.58 5.74 16 26 C 0.12 4.05 6.60 86.42 0.57 4.62 16 27 N -0.52 -12.14 10.39 -192.10 -2.00 -14.14 16 28 C 0.17 3.20 8.94 85.03 0.76 3.96 16 29 H 0.07 1.02 6.91 -2.39 -0.02 1.00 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.29 7.16 -2.39 -0.02 0.28 16 33 H 0.10 0.29 8.04 -2.39 -0.02 0.27 16 34 H 0.07 0.64 6.19 -2.39 -0.01 0.62 16 35 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 36 H 0.16 5.15 5.26 -5.39 -0.03 5.12 16 37 H 0.42 9.85 6.30 -92.71 -0.58 9.27 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.09 2.38 5.62 -2.39 -0.01 2.36 16 40 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.08 3.67 6.11 -2.39 -0.01 3.66 16 42 H 0.25 13.58 8.31 -92.70 -0.77 12.81 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.08 2.85 7.94 -2.39 -0.02 2.83 16 45 H 0.09 2.99 6.99 -2.39 -0.02 2.98 16 46 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.20 2.18 6.35 -2.91 -0.02 2.16 16 Total: -1.00 -70.48 376.71 1.61 -68.88 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.43 Total: 21.62 kcal Atomic # 6 Polarization: 43.47 SS G_CDS: 10.12 Total: 53.58 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -10.85 Total: -149.29 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -0.11 Total: -39.15 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -70.48 1.61 -68.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673573424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.604 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds