Wall clock time and date at job start Wed Apr 1 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99731 * 2 1 4 4 C 1.50692 * 109.47436 * 293.95884 * 3 2 1 5 5 O 1.21295 * 119.99990 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00580 * 179.97438 * 4 3 2 7 7 C 1.37093 * 120.00606 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00146 * 0.02562 * 7 6 4 9 9 C 1.38949 * 119.99972 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00424 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99838 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47183 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47061 * 120.00407 * 11 9 7 14 14 H 1.48498 * 109.47127 * 240.00211 * 11 9 7 15 15 C 1.46895 * 111.00620 * 123.95815 * 2 1 3 16 16 C 1.52997 * 109.47115 * 61.92930 * 15 2 1 17 17 H 1.09001 * 109.87278 * 299.35153 * 16 15 2 18 18 C 1.54329 * 109.88119 * 60.36572 * 16 15 2 19 19 C 1.55154 * 102.93866 * 141.76734 * 18 16 15 20 20 C 1.54904 * 101.58357 * 324.49381 * 19 18 16 21 21 N 1.47022 * 110.01280 * 178.24847 * 16 15 2 22 22 C 1.34781 * 125.64237 * 61.52896 * 21 16 15 23 23 O 1.21557 * 119.99434 * 185.58451 * 22 21 16 24 24 C 1.47830 * 120.00599 * 5.58253 * 22 21 16 25 25 C 1.39953 * 120.93761 * 5.10173 * 24 22 21 26 26 N 1.32143 * 118.92562 * 179.71467 * 25 24 22 27 27 C 1.31878 * 120.96210 * 0.57630 * 26 25 24 28 28 N 1.31862 * 122.09647 * 359.69846 * 27 26 25 29 29 C 1.32145 * 120.97006 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46859 * 301.01600 * 1 2 3 31 31 H 1.08992 * 109.47582 * 61.01847 * 1 2 3 32 32 H 1.09001 * 109.46809 * 181.02729 * 1 2 3 33 33 H 1.08998 * 109.46939 * 53.96148 * 3 2 1 34 34 H 1.09004 * 109.47184 * 173.95442 * 3 2 1 35 35 H 0.97009 * 119.99233 * 0.02562 * 6 4 3 36 36 H 0.97001 * 120.00488 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.47019 * 301.92999 * 15 2 1 38 38 H 1.08996 * 109.47351 * 181.93053 * 15 2 1 39 39 H 1.08998 * 110.71553 * 260.12274 * 18 16 15 40 40 H 1.08998 * 110.72065 * 23.40230 * 18 16 15 41 41 H 1.09000 * 111.00799 * 82.57398 * 19 18 16 42 42 H 1.09008 * 111.00045 * 206.38550 * 19 18 16 43 43 H 1.09006 * 110.36754 * 155.84885 * 20 19 18 44 44 H 1.09000 * 110.36875 * 278.17519 * 20 19 18 45 45 H 1.08003 * 120.53294 * 359.97438 * 25 24 22 46 46 H 1.07997 * 118.94522 * 179.72265 * 27 26 25 47 47 H 1.08001 * 120.54060 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2983 5 8 1.0052 1.4454 -2.1410 6 7 2.0178 3.3203 -1.5232 7 6 1.6920 3.9349 -2.7045 8 1 1.1297 3.3991 -3.4549 9 6 2.0844 5.2476 -2.9361 10 7 2.7681 5.8999 -2.0229 11 14 1.6398 6.0853 -4.5455 12 1 0.8726 5.1427 -5.3987 13 1 0.8116 7.2859 -4.2664 14 1 2.8814 6.4935 -5.2505 15 6 1.9956 -0.7660 1.1374 16 6 1.5447 -2.2236 1.0232 17 1 0.4561 -2.2770 1.0389 18 6 2.0816 -2.8378 -0.2869 19 6 2.4560 -4.2832 0.1350 20 6 2.9716 -4.0621 1.5789 21 7 2.1001 -3.0106 2.1339 22 6 1.8539 -2.8041 3.4429 23 8 2.4473 -3.4526 4.2825 24 6 0.8623 -1.7891 3.8575 25 6 0.0919 -1.1065 2.9093 26 7 -0.7868 -0.2112 3.3245 27 6 -0.9344 0.0499 4.6087 28 7 -0.2256 -0.5656 5.5348 29 6 0.6712 -1.4799 5.2089 30 1 -0.3633 0.5296 0.8808 31 1 -0.3634 0.4979 -0.8989 32 1 -0.3633 -1.0275 0.0184 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3445 0.1082 35 1 2.5232 3.8015 -0.8493 36 1 3.0424 6.8161 -2.1846 37 1 1.6184 -0.3409 2.0676 38 1 3.0846 -0.7211 1.1328 39 1 1.3069 -2.8484 -1.0536 40 1 2.9620 -2.2971 -0.6339 41 1 1.5799 -4.9317 0.1280 42 1 3.2423 -4.6854 -0.5039 43 1 2.8768 -4.9793 2.1603 44 1 4.0086 -3.7267 1.5643 45 1 0.2107 -1.3113 1.8555 46 1 -1.6591 0.7911 4.9116 47 1 1.2476 -1.9800 5.9731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674445560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:56 Heat of formation + Delta-G solvation = 40.065816 kcal Electronic energy + Delta-G solvation = -31373.813519 eV Core-core repulsion = 27173.163779 eV Total energy + Delta-G solvation = -4200.649739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.99136 -40.23683 -38.85225 -37.98119 -36.25550 -34.27400 -33.86998 -33.19127 -31.52281 -31.28059 -30.51665 -27.91261 -26.64709 -25.92051 -25.13823 -24.52667 -23.38854 -22.10764 -21.15490 -19.87069 -19.22062 -18.50446 -18.00571 -17.84158 -17.34004 -16.68488 -16.01657 -15.85644 -15.58654 -15.13553 -14.94006 -14.80277 -14.51624 -14.41048 -14.00901 -13.79491 -13.67529 -13.45608 -13.26350 -13.12909 -12.99441 -12.45732 -12.15700 -11.92844 -11.90088 -11.54371 -11.44903 -11.39764 -11.33460 -11.29015 -11.02496 -10.96022 -10.90184 -10.36454 -10.30496 -10.25358 -10.04336 -9.60478 -9.51709 -9.10083 -8.51164 -8.02883 -7.92953 -6.44488 -3.85392 0.06059 0.67490 2.38798 2.46755 3.14225 3.25232 3.31847 3.43576 3.63479 3.75452 3.81077 3.86535 4.05403 4.06672 4.18253 4.23267 4.31231 4.45503 4.61470 4.77407 4.82649 4.90362 4.99174 5.06820 5.21478 5.23995 5.34468 5.39780 5.44524 5.49384 5.59867 5.62624 5.72237 5.77489 5.79851 5.88633 5.93699 5.94239 6.08906 6.21257 6.46523 6.47901 6.99693 7.05934 7.19250 7.52756 7.63076 7.67569 8.03096 8.58100 9.15190 9.51025 10.02158 10.73233 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.002794 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.698326 B =10017.657677 C =11347.947993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.506 5.506 3 C 0.047 3.953 4 C 0.446 3.554 5 O -0.576 6.576 6 N -0.563 5.563 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.024 3.976 16 C 0.114 3.886 17 H 0.090 0.910 18 C -0.108 4.108 19 C -0.138 4.138 20 C 0.108 3.892 21 N -0.607 5.607 22 C 0.588 3.412 23 O -0.531 6.531 24 C -0.253 4.253 25 C 0.147 3.853 26 N -0.519 5.519 27 C 0.316 3.684 28 N -0.526 5.526 29 C 0.209 3.791 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.038 0.962 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.206 0.794 46 H 0.203 0.797 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -17.015 10.848 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.231 5.231 3 C -0.085 4.085 4 C 0.231 3.769 5 O -0.461 6.461 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.122 0.878 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.105 4.105 16 C 0.010 3.990 17 H 0.107 0.893 18 C -0.145 4.145 19 C -0.176 4.176 20 C -0.014 4.014 21 N -0.340 5.340 22 C 0.376 3.624 23 O -0.408 6.408 24 C -0.260 4.260 25 C -0.018 4.018 26 N -0.232 5.232 27 C 0.029 3.971 28 N -0.239 5.239 29 C 0.042 3.958 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.222 0.778 46 H 0.219 0.781 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.594 -17.093 10.665 20.314 hybrid contribution 0.505 0.828 0.274 1.008 sum -2.089 -16.265 10.939 19.712 Atomic orbital electron populations 1.22817 0.86567 1.01155 1.03844 1.61606 1.08820 1.13251 1.39390 1.21876 1.00657 0.88381 0.97547 1.19611 0.85577 0.82971 0.88757 1.90480 1.43946 1.64621 1.47014 1.41865 1.49337 1.10717 1.18055 1.19740 1.32931 0.95416 0.94671 0.87793 1.25265 0.96798 0.96662 0.99214 1.69617 1.38061 1.12203 1.34377 0.85808 0.78215 0.79051 0.81323 1.19185 1.20782 1.20761 1.23013 1.01877 0.92601 0.93008 1.22104 0.98002 0.91179 0.87667 0.89287 1.22549 1.03286 0.94024 0.94691 1.22889 1.02104 0.97661 0.94953 1.22310 0.94101 0.90774 0.94188 1.48408 1.47998 1.33058 1.04563 1.17409 0.81597 0.82345 0.81076 1.90795 1.50679 1.49157 1.50182 1.21723 1.03434 1.03419 0.97442 1.25562 0.86169 0.86912 1.03141 1.68665 1.19174 1.16531 1.18839 1.25397 0.93463 0.93849 0.84368 1.68596 1.07527 1.08922 1.38847 1.23482 0.89844 0.88637 0.93831 0.94796 0.87757 0.92533 0.93370 0.89397 0.77538 0.91907 0.94403 0.89374 0.88955 0.89064 0.90549 0.89238 0.90076 0.90815 0.77813 0.78099 0.80272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 7.97 60.06 0.48 0.53 16 2 N -0.51 -7.33 4.15 -244.38 -1.01 -8.34 16 3 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 4 C 0.45 9.94 7.51 -10.99 -0.08 9.86 16 5 O -0.58 -14.50 13.88 5.54 0.08 -14.42 16 6 N -0.56 -13.79 5.29 -10.97 -0.06 -13.85 16 7 C -0.30 -8.07 9.68 -14.94 -0.14 -8.22 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 11 Si 0.93 20.65 29.55 -169.99 -5.02 15.62 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.02 0.28 3.84 -3.83 -0.01 0.27 16 16 C 0.11 1.11 1.92 -66.95 -0.13 0.98 16 17 H 0.09 0.85 4.52 -51.93 -0.23 0.62 16 18 C -0.11 -0.94 6.12 -24.90 -0.15 -1.09 16 19 C -0.14 -0.92 7.08 -24.59 -0.17 -1.10 16 20 C 0.11 0.89 6.89 -2.53 -0.02 0.88 16 21 N -0.61 -6.16 3.07 -164.14 -0.50 -6.66 16 22 C 0.59 7.05 7.62 -12.33 -0.09 6.96 16 23 O -0.53 -7.58 16.76 5.32 0.09 -7.49 16 24 C -0.25 -2.88 5.50 -104.69 -0.58 -3.45 16 25 C 0.15 1.67 6.90 -16.78 -0.12 1.56 16 26 N -0.52 -6.12 9.94 -14.24 -0.14 -6.26 16 27 C 0.32 3.27 12.27 -92.02 -1.13 2.14 16 28 N -0.53 -5.80 10.42 -14.25 -0.15 -5.95 16 29 C 0.21 2.27 10.88 -16.78 -0.18 2.09 16 30 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 31 H 0.10 1.88 5.90 -51.93 -0.31 1.57 16 32 H 0.06 0.67 5.91 -51.93 -0.31 0.36 16 33 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.09 1.34 7.99 -51.93 -0.41 0.92 16 35 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 36 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 37 H 0.04 0.47 4.51 -51.93 -0.23 0.23 16 38 H 0.09 1.01 8.02 -51.93 -0.42 0.60 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.88 7.85 -51.93 -0.41 0.48 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 43 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.21 2.24 0.75 -52.50 -0.04 2.20 16 46 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 47 H 0.18 1.68 7.75 -52.49 -0.41 1.27 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -32.17 372.92 -8.75 -40.92 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -5.92 Total: 11.61 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: -2.46 Total: 12.65 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: -1.14 Total: -64.49 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.17 Total: -21.92 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.17 -8.75 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674445560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.984 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds