Wall clock time and date at job start Wed Apr 1 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99731 * 2 1 4 4 C 1.50692 * 109.47436 * 293.95884 * 3 2 1 5 5 O 1.21295 * 119.99990 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00580 * 179.97438 * 4 3 2 7 7 C 1.37093 * 120.00606 * 179.97438 * 6 4 3 8 8 H 1.08001 * 120.00146 * 0.02562 * 7 6 4 9 9 C 1.38949 * 119.99972 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00424 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99838 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47183 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47061 * 120.00407 * 11 9 7 14 14 H 1.48498 * 109.47127 * 240.00211 * 11 9 7 15 15 C 1.46895 * 111.00620 * 123.95815 * 2 1 3 16 16 C 1.52997 * 109.47115 * 61.92930 * 15 2 1 17 17 H 1.09001 * 109.87278 * 299.35153 * 16 15 2 18 18 C 1.54329 * 109.88119 * 60.36572 * 16 15 2 19 19 C 1.55154 * 102.93866 * 141.76734 * 18 16 15 20 20 C 1.54904 * 101.58357 * 324.49381 * 19 18 16 21 21 N 1.47022 * 110.01280 * 178.24847 * 16 15 2 22 22 C 1.34781 * 125.64237 * 61.52896 * 21 16 15 23 23 O 1.21557 * 119.99434 * 185.58451 * 22 21 16 24 24 C 1.47830 * 120.00599 * 5.58253 * 22 21 16 25 25 C 1.39953 * 120.93761 * 5.10173 * 24 22 21 26 26 N 1.32143 * 118.92562 * 179.71467 * 25 24 22 27 27 C 1.31878 * 120.96210 * 0.57630 * 26 25 24 28 28 N 1.31862 * 122.09647 * 359.69846 * 27 26 25 29 29 C 1.32145 * 120.97006 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46859 * 301.01600 * 1 2 3 31 31 H 1.08992 * 109.47582 * 61.01847 * 1 2 3 32 32 H 1.09001 * 109.46809 * 181.02729 * 1 2 3 33 33 H 1.08998 * 109.46939 * 53.96148 * 3 2 1 34 34 H 1.09004 * 109.47184 * 173.95442 * 3 2 1 35 35 H 0.97009 * 119.99233 * 0.02562 * 6 4 3 36 36 H 0.97001 * 120.00488 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.47019 * 301.92999 * 15 2 1 38 38 H 1.08996 * 109.47351 * 181.93053 * 15 2 1 39 39 H 1.08998 * 110.71553 * 260.12274 * 18 16 15 40 40 H 1.08998 * 110.72065 * 23.40230 * 18 16 15 41 41 H 1.09000 * 111.00799 * 82.57398 * 19 18 16 42 42 H 1.09008 * 111.00045 * 206.38550 * 19 18 16 43 43 H 1.09006 * 110.36754 * 155.84885 * 20 19 18 44 44 H 1.09000 * 110.36875 * 278.17519 * 20 19 18 45 45 H 1.08003 * 120.53294 * 359.97438 * 25 24 22 46 46 H 1.07997 * 118.94522 * 179.72265 * 27 26 25 47 47 H 1.08001 * 120.54060 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2983 5 8 1.0052 1.4454 -2.1410 6 7 2.0178 3.3203 -1.5232 7 6 1.6920 3.9349 -2.7045 8 1 1.1297 3.3991 -3.4549 9 6 2.0844 5.2476 -2.9361 10 7 2.7681 5.8999 -2.0229 11 14 1.6398 6.0853 -4.5455 12 1 0.8726 5.1427 -5.3987 13 1 0.8116 7.2859 -4.2664 14 1 2.8814 6.4935 -5.2505 15 6 1.9956 -0.7660 1.1374 16 6 1.5447 -2.2236 1.0232 17 1 0.4561 -2.2770 1.0389 18 6 2.0816 -2.8378 -0.2869 19 6 2.4560 -4.2832 0.1350 20 6 2.9716 -4.0621 1.5789 21 7 2.1001 -3.0106 2.1339 22 6 1.8539 -2.8041 3.4429 23 8 2.4473 -3.4526 4.2825 24 6 0.8623 -1.7891 3.8575 25 6 0.0919 -1.1065 2.9093 26 7 -0.7868 -0.2112 3.3245 27 6 -0.9344 0.0499 4.6087 28 7 -0.2256 -0.5656 5.5348 29 6 0.6712 -1.4799 5.2089 30 1 -0.3633 0.5296 0.8808 31 1 -0.3634 0.4979 -0.8989 32 1 -0.3633 -1.0275 0.0184 33 1 1.5611 1.9273 0.8310 34 1 3.0797 1.3445 0.1082 35 1 2.5232 3.8015 -0.8493 36 1 3.0424 6.8161 -2.1846 37 1 1.6184 -0.3409 2.0676 38 1 3.0846 -0.7211 1.1328 39 1 1.3069 -2.8484 -1.0536 40 1 2.9620 -2.2971 -0.6339 41 1 1.5799 -4.9317 0.1280 42 1 3.2423 -4.6854 -0.5039 43 1 2.8768 -4.9793 2.1603 44 1 4.0086 -3.7267 1.5643 45 1 0.2107 -1.3113 1.8555 46 1 -1.6591 0.7911 4.9116 47 1 1.2476 -1.9800 5.9731 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674445560.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:52 Heat of formation + Delta-G solvation = 17.252970 kcal Electronic energy + Delta-G solvation = -31374.802758 eV Core-core repulsion = 27173.163779 eV Total energy + Delta-G solvation = -4201.638978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.85183 -41.09352 -40.32233 -39.19063 -37.42285 -35.85037 -35.08303 -34.05362 -33.25337 -32.31001 -31.47158 -29.26200 -27.66939 -27.02679 -26.22941 -25.83230 -24.35511 -23.04131 -22.00290 -20.97385 -20.71629 -19.84081 -19.35239 -18.78640 -18.21085 -17.91947 -17.17068 -16.88711 -16.64658 -16.44729 -16.26275 -16.12729 -15.76078 -15.40961 -15.22352 -15.06524 -14.84153 -14.73558 -14.10264 -14.07460 -13.90430 -13.69758 -13.44367 -13.22627 -13.09091 -12.88638 -12.79832 -12.55252 -12.43577 -12.36315 -12.14374 -12.09216 -12.07501 -11.85528 -11.57877 -11.43606 -11.22710 -10.92189 -10.46240 -10.29718 -9.97345 -9.87196 -9.24558 -8.44067 -5.92101 -0.78201 -0.18068 1.38215 1.43680 1.50767 1.57491 1.62281 2.08284 2.29335 2.57020 2.65870 2.90948 2.99255 3.17814 3.22669 3.23106 3.37903 3.45348 3.52438 3.59260 3.83788 4.05483 4.10162 4.17054 4.19848 4.28206 4.33717 4.47269 4.49817 4.52254 4.53311 4.63100 4.71375 4.79634 4.94401 4.95318 5.09869 5.16390 5.21457 5.23388 5.41318 5.44259 5.64004 5.76280 5.98878 6.07424 6.19573 6.62949 6.77292 6.81724 7.16173 7.59666 8.14783 8.73636 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013538 B = 0.002794 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.698326 B =10017.657677 C =11347.947993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.511 5.511 3 C 0.058 3.942 4 C 0.447 3.553 5 O -0.606 6.606 6 N -0.576 5.576 7 C -0.327 4.327 8 H 0.082 0.918 9 C -0.015 4.015 10 N -0.923 5.923 11 Si 0.991 3.009 12 H -0.271 1.271 13 H -0.274 1.274 14 H -0.273 1.273 15 C 0.031 3.969 16 C 0.117 3.883 17 H 0.096 0.904 18 C -0.107 4.107 19 C -0.124 4.124 20 C 0.102 3.898 21 N -0.602 5.602 22 C 0.587 3.413 23 O -0.559 6.559 24 C -0.260 4.260 25 C 0.147 3.853 26 N -0.536 5.536 27 C 0.314 3.686 28 N -0.533 5.533 29 C 0.207 3.793 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.394 0.606 36 H 0.276 0.724 37 H 0.036 0.964 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.208 0.792 46 H 0.231 0.769 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 -17.729 11.052 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.236 5.236 3 C -0.073 4.073 4 C 0.234 3.766 5 O -0.492 6.492 6 N -0.214 5.214 7 C -0.456 4.456 8 H 0.100 0.900 9 C -0.214 4.214 10 N -0.565 5.565 11 Si 0.815 3.185 12 H -0.195 1.195 13 H -0.199 1.199 14 H -0.198 1.198 15 C -0.098 4.098 16 C 0.014 3.986 17 H 0.113 0.887 18 C -0.145 4.145 19 C -0.162 4.162 20 C -0.019 4.019 21 N -0.335 5.335 22 C 0.375 3.625 23 O -0.439 6.439 24 C -0.267 4.267 25 C -0.018 4.018 26 N -0.250 5.250 27 C 0.029 3.971 28 N -0.247 5.247 29 C 0.041 3.959 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.227 0.773 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.223 0.777 46 H 0.247 0.753 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.509 -17.820 10.870 21.024 hybrid contribution 0.455 0.988 0.254 1.116 sum -2.055 -16.833 11.124 20.281 Atomic orbital electron populations 1.22677 0.86590 1.02427 1.01900 1.61542 1.08835 1.12037 1.41137 1.21726 1.02003 0.89339 0.94266 1.20559 0.83744 0.82179 0.90126 1.90465 1.44795 1.65171 1.48723 1.41940 1.50184 1.11632 1.17634 1.19695 1.34103 0.96264 0.95584 0.90008 1.26013 0.96396 0.96736 1.02249 1.69681 1.38450 1.12600 1.35720 0.84894 0.78173 0.77911 0.77525 1.19541 1.19903 1.19822 1.22995 1.01996 0.93201 0.91600 1.22080 0.98297 0.90036 0.88164 0.88749 1.22534 1.02868 0.95233 0.93890 1.22862 1.03025 0.96433 0.93846 1.22502 0.94100 0.90271 0.95061 1.48455 1.47761 1.33145 1.04091 1.17497 0.81449 0.82145 0.81394 1.90778 1.51840 1.50292 1.50954 1.21710 1.03663 1.03645 0.97700 1.25582 0.86118 0.86848 1.03228 1.68704 1.19636 1.16992 1.19622 1.25997 0.93428 0.93821 0.83879 1.68668 1.07792 1.09168 1.39058 1.23718 0.89718 0.88455 0.94053 0.94646 0.91489 0.89850 0.92279 0.87375 0.77266 0.91467 0.94625 0.88928 0.88944 0.89911 0.89599 0.87384 0.89974 0.90413 0.77671 0.75294 0.79244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 7.97 127.69 1.02 1.34 16 2 N -0.51 -14.21 4.15 -927.08 -3.85 -18.06 16 3 C 0.06 1.89 5.45 85.55 0.47 2.35 16 4 C 0.45 20.11 7.51 87.65 0.66 20.77 16 5 O -0.61 -31.09 13.88 -3.07 -0.04 -31.14 16 6 N -0.58 -28.69 5.29 -306.99 -1.62 -30.31 16 7 C -0.33 -18.07 9.68 84.04 0.81 -17.25 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 10 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 11 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 12 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 15 C 0.03 0.67 3.84 86.30 0.33 1.00 16 16 C 0.12 2.08 1.92 45.34 0.09 2.16 16 17 H 0.10 1.62 4.52 -2.39 -0.01 1.60 16 18 C -0.11 -1.65 6.12 31.78 0.19 -1.45 16 19 C -0.12 -1.33 7.08 31.98 0.23 -1.10 16 20 C 0.10 1.48 6.89 86.85 0.60 2.08 16 21 N -0.60 -11.24 3.07 -791.48 -2.43 -13.67 16 22 C 0.59 13.42 7.62 86.78 0.66 14.08 16 23 O -0.56 -15.55 16.76 -3.90 -0.07 -15.62 16 24 C -0.26 -5.62 5.50 -19.91 -0.11 -5.73 16 25 C 0.15 3.15 6.90 85.06 0.59 3.74 16 26 N -0.54 -11.89 9.94 -198.98 -1.98 -13.87 16 27 C 0.31 6.03 12.27 180.84 2.22 8.25 16 28 N -0.53 -11.06 10.42 -198.98 -2.07 -13.14 16 29 C 0.21 4.29 10.88 85.06 0.93 5.22 16 30 H 0.04 0.98 6.94 -2.39 -0.02 0.96 16 31 H 0.07 2.44 5.90 -2.39 -0.01 2.43 16 32 H 0.08 1.85 5.91 -2.39 -0.01 1.83 16 33 H 0.06 1.83 8.12 -2.39 -0.02 1.81 16 34 H 0.11 3.11 7.99 -2.38 -0.02 3.09 16 35 H 0.39 18.88 7.90 -92.70 -0.73 18.14 16 36 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.04 0.82 4.51 -2.39 -0.01 0.81 16 38 H 0.09 1.95 8.02 -2.39 -0.02 1.93 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.45 7.85 -2.39 -0.02 1.43 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.08 1.22 8.09 -2.38 -0.02 1.20 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.21 4.18 0.75 -2.92 0.00 4.18 16 46 H 0.23 2.77 8.06 -2.91 -0.02 2.74 16 47 H 0.19 3.40 7.75 -2.91 -0.02 3.37 16 Total: -1.00 -69.58 372.92 -0.30 -69.88 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.31 Total: 35.55 kcal Atomic # 6 Polarization: 26.00 SS G_CDS: 9.14 Total: 35.15 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -11.67 Total: -138.14 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.11 Total: -46.75 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -69.58 -0.30 -69.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674445560.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.129 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds