Wall clock time and date at job start Wed Apr 1 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00031 * 2 1 4 4 C 1.50701 * 109.47288 * 66.04551 * 3 2 1 5 5 O 1.21293 * 119.99735 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00262 * 179.97438 * 4 3 2 7 7 C 1.37096 * 119.99994 * 179.97438 * 6 4 3 8 8 H 1.07994 * 120.00145 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99591 * 180.02562 * 7 6 4 10 10 N 1.31407 * 120.00252 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99695 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46825 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47079 * 119.99775 * 11 9 7 14 14 H 1.48502 * 109.46950 * 239.99652 * 11 9 7 15 15 C 1.46897 * 111.00048 * 236.04618 * 2 1 3 16 16 C 1.53001 * 109.46974 * 287.95281 * 15 2 1 17 17 H 1.08998 * 109.87536 * 57.82711 * 16 15 2 18 18 C 1.54327 * 110.01195 * 296.73025 * 16 15 2 19 19 C 1.55276 * 103.00813 * 218.39748 * 18 16 15 20 20 C 1.54912 * 101.53098 * 35.35884 * 19 18 16 21 21 N 1.47022 * 109.88341 * 178.84426 * 16 15 2 22 22 C 1.34771 * 125.64959 * 298.49295 * 21 16 15 23 23 O 1.21556 * 120.00499 * 174.40340 * 22 21 16 24 24 C 1.47836 * 120.00003 * 354.40137 * 22 21 16 25 25 C 1.39946 * 120.93760 * 357.29207 * 24 22 21 26 26 N 1.32150 * 118.92339 * 179.71341 * 25 24 22 27 27 C 1.31866 * 120.96586 * 0.57287 * 26 25 24 28 28 N 1.31870 * 122.09794 * 359.69942 * 27 26 25 29 29 C 1.32149 * 120.96172 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47197 * 188.71199 * 1 2 3 31 31 H 1.08996 * 109.46983 * 308.71436 * 1 2 3 32 32 H 1.09004 * 109.46746 * 68.71399 * 1 2 3 33 33 H 1.09000 * 109.47273 * 186.04464 * 3 2 1 34 34 H 1.08994 * 109.47280 * 306.04431 * 3 2 1 35 35 H 0.96996 * 119.99803 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99916 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47308 * 167.95585 * 15 2 1 38 38 H 1.08995 * 109.47213 * 47.95044 * 15 2 1 39 39 H 1.09005 * 110.71591 * 336.68058 * 18 16 15 40 40 H 1.08994 * 110.72511 * 99.77497 * 18 16 15 41 41 H 1.09004 * 110.96167 * 277.33352 * 19 18 16 42 42 H 1.09001 * 111.10472 * 153.44692 * 19 18 16 43 43 H 1.08996 * 110.36946 * 204.23455 * 20 19 18 44 44 H 1.09006 * 110.36682 * 82.01754 * 20 19 18 45 45 H 1.08010 * 120.53847 * 359.97438 * 25 24 22 46 46 H 1.08001 * 118.95046 * 179.72173 * 27 26 25 47 47 H 1.08005 * 120.53131 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0189 3.3199 1.5237 7 6 1.6923 3.9347 2.7047 8 1 1.1286 3.3994 3.4544 9 6 2.0857 5.2471 2.9367 10 7 2.7711 5.8986 2.0243 11 14 1.6412 6.0847 4.5462 12 1 0.8730 5.1423 5.3989 13 1 2.8829 6.4916 5.2518 14 1 0.8140 7.2860 4.2671 15 6 1.9955 -0.7660 -1.1376 16 6 1.7631 -2.2592 -0.8982 17 1 0.6995 -2.4506 -0.7565 18 6 2.5502 -2.7234 0.3454 19 6 3.0560 -4.1324 -0.0670 20 6 3.3333 -3.9319 -1.5778 21 7 2.2621 -3.0329 -2.0445 22 6 1.8140 -2.9367 -3.3119 23 8 2.3688 -3.5524 -4.2011 24 6 0.6477 -2.0824 -3.6208 25 6 -0.0403 -1.4094 -2.6048 26 7 -1.0741 -0.6516 -2.9265 27 6 -1.4652 -0.5343 -4.1803 28 7 -0.8493 -1.1548 -5.1675 29 6 0.1974 -1.9278 -4.9367 30 1 -0.3633 -1.0157 0.1556 31 1 -0.3633 0.6427 0.8018 32 1 -0.3633 0.3731 -0.9576 33 1 3.0797 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5242 3.8010 0.8500 36 1 3.0461 6.8147 2.1865 37 1 3.0640 -0.5764 -1.2400 38 1 1.4831 -0.4602 -2.0497 39 1 3.3897 -2.0564 0.5416 40 1 1.8963 -2.7841 1.2153 41 1 2.2844 -4.8857 0.0920 42 1 3.9700 -4.3930 0.4668 43 1 3.2835 -4.8859 -2.1026 44 1 4.3088 -3.4685 -1.7263 45 1 0.2711 -1.5045 -1.5750 46 1 -2.3170 0.0902 -4.4060 47 1 0.6969 -2.4325 -5.7505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674445561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:00 Heat of formation + Delta-G solvation = 44.916042 kcal Electronic energy + Delta-G solvation = -31384.122539 eV Core-core repulsion = 27183.683121 eV Total energy + Delta-G solvation = -4200.439418 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.01495 -40.20762 -38.86342 -37.97554 -36.29603 -34.26320 -33.86532 -33.18752 -31.50880 -31.28233 -30.52823 -27.99104 -26.55322 -25.91623 -25.15248 -24.48831 -23.34951 -22.11838 -21.16656 -19.87024 -19.22057 -18.47653 -18.00672 -17.84816 -17.31791 -16.65881 -16.02291 -15.83213 -15.60133 -15.12046 -15.00742 -14.74143 -14.48387 -14.40025 -14.02589 -13.76839 -13.67174 -13.48070 -13.22955 -13.10716 -12.96499 -12.43447 -12.18626 -11.94462 -11.86950 -11.54172 -11.44436 -11.42932 -11.31143 -11.20284 -11.00560 -10.93813 -10.91883 -10.36672 -10.29558 -10.25654 -10.02257 -9.58958 -9.51632 -9.11157 -8.49800 -8.03248 -7.94384 -6.44867 -3.85743 0.06955 0.68235 2.40579 2.47128 3.14009 3.25056 3.31692 3.44177 3.64480 3.75835 3.81149 3.86247 4.05370 4.08797 4.19956 4.24237 4.33055 4.48694 4.62220 4.78829 4.85341 4.89688 4.99135 5.07744 5.21326 5.23021 5.36016 5.39322 5.45200 5.52631 5.61171 5.62363 5.72390 5.78429 5.82063 5.89825 5.94978 5.97497 6.08525 6.21133 6.47545 6.48946 7.00485 7.06377 7.19251 7.52476 7.63958 7.68575 8.02797 8.57707 9.14843 9.50680 10.01746 10.72833 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.002772 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.856929 B =10097.039876 C =11378.586212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.509 5.509 3 C 0.047 3.953 4 C 0.445 3.555 5 O -0.576 6.576 6 N -0.563 5.563 7 C -0.298 4.298 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.022 3.978 16 C 0.117 3.883 17 H 0.089 0.911 18 C -0.107 4.107 19 C -0.138 4.138 20 C 0.108 3.892 21 N -0.607 5.607 22 C 0.588 3.412 23 O -0.531 6.531 24 C -0.254 4.254 25 C 0.143 3.857 26 N -0.518 5.518 27 C 0.315 3.685 28 N -0.526 5.526 29 C 0.209 3.791 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.212 0.788 46 H 0.202 0.798 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.403 -17.105 -10.428 20.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.233 5.233 3 C -0.085 4.085 4 C 0.230 3.770 5 O -0.460 6.460 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.122 0.878 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.108 4.108 16 C 0.014 3.986 17 H 0.106 0.894 18 C -0.145 4.145 19 C -0.176 4.176 20 C -0.014 4.014 21 N -0.340 5.340 22 C 0.376 3.624 23 O -0.409 6.409 24 C -0.261 4.261 25 C -0.021 4.021 26 N -0.232 5.232 27 C 0.029 3.971 28 N -0.240 5.240 29 C 0.042 3.958 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.227 0.773 46 H 0.219 0.781 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.133 -17.276 -10.196 20.173 hybrid contribution 0.573 0.904 -0.327 1.119 sum -1.559 -16.372 -10.522 19.525 Atomic orbital electron populations 1.22851 0.86240 1.02490 1.02802 1.61543 1.09003 1.13267 1.39464 1.21876 1.00607 0.88455 0.97525 1.19624 0.85589 0.82989 0.88786 1.90493 1.43867 1.64633 1.47008 1.41866 1.49308 1.10741 1.18064 1.19741 1.32862 0.95443 0.94724 0.87791 1.25264 0.96791 0.96664 0.99213 1.69619 1.37991 1.12237 1.34406 0.85810 0.78218 0.79052 0.81329 1.19180 1.20756 1.20783 1.23081 1.02073 0.92759 0.92879 1.22016 0.98991 0.90919 0.86718 0.89360 1.22551 1.00796 0.95382 0.95759 1.22906 1.02538 0.97924 0.94206 1.22305 0.90269 0.94041 0.94781 1.48415 1.37957 1.40702 1.06975 1.17409 0.82650 0.81111 0.81268 1.90793 1.58535 1.46706 1.44851 1.21731 1.01470 1.05318 0.97604 1.25780 0.87297 0.86052 1.02997 1.68669 1.14468 1.18185 1.21836 1.25400 0.96188 0.91764 0.83784 1.68603 1.09011 1.09375 1.36982 1.23481 0.88817 0.88629 0.94881 0.92358 0.88057 0.94360 0.89354 0.93394 0.77536 0.91908 0.89435 0.94076 0.89350 0.88841 0.90528 0.89241 0.90098 0.90853 0.77263 0.78128 0.80300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 7.91 60.07 0.48 0.53 16 2 N -0.51 -7.36 4.16 -244.38 -1.02 -8.37 16 3 C 0.05 0.77 5.44 -4.98 -0.03 0.75 16 4 C 0.44 9.88 7.43 -10.98 -0.08 9.80 16 5 O -0.58 -14.48 13.95 5.55 0.08 -14.41 16 6 N -0.56 -13.74 5.29 -10.96 -0.06 -13.80 16 7 C -0.30 -8.06 9.68 -14.93 -0.14 -8.20 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 11 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 C 0.02 0.25 3.89 -3.82 -0.01 0.24 16 16 C 0.12 1.15 2.18 -66.95 -0.15 1.01 16 17 H 0.09 0.87 5.07 -51.93 -0.26 0.60 16 18 C -0.11 -0.94 6.20 -24.83 -0.15 -1.10 16 19 C -0.14 -0.93 7.10 -24.52 -0.17 -1.10 16 20 C 0.11 0.90 6.88 -2.52 -0.02 0.88 16 21 N -0.61 -6.20 3.07 -164.29 -0.50 -6.71 16 22 C 0.59 7.08 7.63 -12.34 -0.09 6.99 16 23 O -0.53 -7.62 16.75 5.32 0.09 -7.53 16 24 C -0.25 -2.90 5.52 -104.69 -0.58 -3.48 16 25 C 0.14 1.64 6.54 -16.78 -0.11 1.53 16 26 N -0.52 -6.09 9.26 -14.24 -0.13 -6.22 16 27 C 0.32 3.25 12.27 -92.03 -1.13 2.12 16 28 N -0.53 -5.79 10.42 -14.24 -0.15 -5.94 16 29 C 0.21 2.27 10.88 -16.78 -0.18 2.09 16 30 H 0.06 0.73 6.54 -51.93 -0.34 0.39 16 31 H 0.10 1.86 5.79 -51.93 -0.30 1.56 16 32 H 0.04 0.54 5.82 -51.93 -0.30 0.24 16 33 H 0.09 1.32 7.86 -51.93 -0.41 0.91 16 34 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 36 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.09 0.99 7.78 -51.93 -0.40 0.58 16 38 H 0.04 0.51 4.33 -51.93 -0.23 0.28 16 39 H 0.09 0.85 7.84 -51.93 -0.41 0.44 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.21 2.34 0.48 -52.72 -0.03 2.31 16 46 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 47 H 0.18 1.68 7.75 -52.48 -0.41 1.27 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -32.08 371.34 -8.74 -40.82 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.87 Total: 11.80 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -2.47 Total: 12.53 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -1.13 Total: -64.40 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.17 Total: -21.93 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.08 -8.74 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674445561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.732 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds