Wall clock time and date at job start Wed Apr 1 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00031 * 2 1 4 4 C 1.50701 * 109.47288 * 66.04551 * 3 2 1 5 5 O 1.21293 * 119.99735 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00262 * 179.97438 * 4 3 2 7 7 C 1.37096 * 119.99994 * 179.97438 * 6 4 3 8 8 H 1.07994 * 120.00145 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99591 * 180.02562 * 7 6 4 10 10 N 1.31407 * 120.00252 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99695 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46825 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47079 * 119.99775 * 11 9 7 14 14 H 1.48502 * 109.46950 * 239.99652 * 11 9 7 15 15 C 1.46897 * 111.00048 * 236.04618 * 2 1 3 16 16 C 1.53001 * 109.46974 * 287.95281 * 15 2 1 17 17 H 1.08998 * 109.87536 * 57.82711 * 16 15 2 18 18 C 1.54327 * 110.01195 * 296.73025 * 16 15 2 19 19 C 1.55276 * 103.00813 * 218.39748 * 18 16 15 20 20 C 1.54912 * 101.53098 * 35.35884 * 19 18 16 21 21 N 1.47022 * 109.88341 * 178.84426 * 16 15 2 22 22 C 1.34771 * 125.64959 * 298.49295 * 21 16 15 23 23 O 1.21556 * 120.00499 * 174.40340 * 22 21 16 24 24 C 1.47836 * 120.00003 * 354.40137 * 22 21 16 25 25 C 1.39946 * 120.93760 * 357.29207 * 24 22 21 26 26 N 1.32150 * 118.92339 * 179.71341 * 25 24 22 27 27 C 1.31866 * 120.96586 * 0.57287 * 26 25 24 28 28 N 1.31870 * 122.09794 * 359.69942 * 27 26 25 29 29 C 1.32149 * 120.96172 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47197 * 188.71199 * 1 2 3 31 31 H 1.08996 * 109.46983 * 308.71436 * 1 2 3 32 32 H 1.09004 * 109.46746 * 68.71399 * 1 2 3 33 33 H 1.09000 * 109.47273 * 186.04464 * 3 2 1 34 34 H 1.08994 * 109.47280 * 306.04431 * 3 2 1 35 35 H 0.96996 * 119.99803 * 0.02562 * 6 4 3 36 36 H 0.97007 * 119.99916 * 180.02562 * 10 9 7 37 37 H 1.09000 * 109.47308 * 167.95585 * 15 2 1 38 38 H 1.08995 * 109.47213 * 47.95044 * 15 2 1 39 39 H 1.09005 * 110.71591 * 336.68058 * 18 16 15 40 40 H 1.08994 * 110.72511 * 99.77497 * 18 16 15 41 41 H 1.09004 * 110.96167 * 277.33352 * 19 18 16 42 42 H 1.09001 * 111.10472 * 153.44692 * 19 18 16 43 43 H 1.08996 * 110.36946 * 204.23455 * 20 19 18 44 44 H 1.09006 * 110.36682 * 82.01754 * 20 19 18 45 45 H 1.08010 * 120.53847 * 359.97438 * 25 24 22 46 46 H 1.08001 * 118.95046 * 179.72173 * 27 26 25 47 47 H 1.08005 * 120.53131 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0046 1.4456 2.1407 6 7 2.0189 3.3199 1.5237 7 6 1.6923 3.9347 2.7047 8 1 1.1286 3.3994 3.4544 9 6 2.0857 5.2471 2.9367 10 7 2.7711 5.8986 2.0243 11 14 1.6412 6.0847 4.5462 12 1 0.8730 5.1423 5.3989 13 1 2.8829 6.4916 5.2518 14 1 0.8140 7.2860 4.2671 15 6 1.9955 -0.7660 -1.1376 16 6 1.7631 -2.2592 -0.8982 17 1 0.6995 -2.4506 -0.7565 18 6 2.5502 -2.7234 0.3454 19 6 3.0560 -4.1324 -0.0670 20 6 3.3333 -3.9319 -1.5778 21 7 2.2621 -3.0329 -2.0445 22 6 1.8140 -2.9367 -3.3119 23 8 2.3688 -3.5524 -4.2011 24 6 0.6477 -2.0824 -3.6208 25 6 -0.0403 -1.4094 -2.6048 26 7 -1.0741 -0.6516 -2.9265 27 6 -1.4652 -0.5343 -4.1803 28 7 -0.8493 -1.1548 -5.1675 29 6 0.1974 -1.9278 -4.9367 30 1 -0.3633 -1.0157 0.1556 31 1 -0.3633 0.6427 0.8018 32 1 -0.3633 0.3731 -0.9576 33 1 3.0797 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5242 3.8010 0.8500 36 1 3.0461 6.8147 2.1865 37 1 3.0640 -0.5764 -1.2400 38 1 1.4831 -0.4602 -2.0497 39 1 3.3897 -2.0564 0.5416 40 1 1.8963 -2.7841 1.2153 41 1 2.2844 -4.8857 0.0920 42 1 3.9700 -4.3930 0.4668 43 1 3.2835 -4.8859 -2.1026 44 1 4.3088 -3.4685 -1.7263 45 1 0.2711 -1.5045 -1.5750 46 1 -2.3170 0.0902 -4.4060 47 1 0.6969 -2.4325 -5.7505 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674445561.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:59 Heat of formation + Delta-G solvation = 22.283827 kcal Electronic energy + Delta-G solvation = -31385.103945 eV Core-core repulsion = 27183.683121 eV Total energy + Delta-G solvation = -4201.420824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.87959 -41.06469 -40.33328 -39.18216 -37.45672 -35.85655 -35.06620 -34.05392 -33.24870 -32.30066 -31.47135 -29.34176 -27.56518 -27.05730 -26.24162 -25.78943 -24.30806 -23.07359 -22.00128 -20.98214 -20.70075 -19.84054 -19.32416 -18.80143 -18.18850 -17.89959 -17.15117 -16.87939 -16.63176 -16.46415 -16.31211 -16.10078 -15.75532 -15.37820 -15.20600 -15.06691 -14.84262 -14.70284 -14.09549 -14.03484 -13.91673 -13.70418 -13.44726 -13.20116 -13.08708 -12.87661 -12.80078 -12.50363 -12.46093 -12.36067 -12.09355 -12.09169 -12.07810 -11.84022 -11.59099 -11.42799 -11.22072 -10.90141 -10.45340 -10.29063 -9.96890 -9.88172 -9.24537 -8.43918 -5.91840 -0.77464 -0.17587 1.38302 1.43816 1.52152 1.57549 1.62310 2.08810 2.29523 2.57201 2.66366 2.91124 2.99927 3.19022 3.23286 3.24142 3.38898 3.48295 3.52523 3.61778 3.84997 4.07712 4.10230 4.17585 4.19678 4.27889 4.34159 4.47893 4.50946 4.53343 4.53857 4.64457 4.74267 4.79829 4.94388 4.95683 5.10222 5.16506 5.22745 5.24512 5.40480 5.44499 5.64679 5.76728 5.98066 6.07529 6.20445 6.63288 6.77952 6.82487 7.16462 7.60146 8.15275 8.73747 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.002772 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.856929 B =10097.039876 C =11378.586212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.513 5.513 3 C 0.058 3.942 4 C 0.446 3.554 5 O -0.607 6.607 6 N -0.576 5.576 7 C -0.327 4.327 8 H 0.082 0.918 9 C -0.014 4.014 10 N -0.923 5.923 11 Si 0.990 3.010 12 H -0.271 1.271 13 H -0.273 1.273 14 H -0.274 1.274 15 C 0.028 3.972 16 C 0.120 3.880 17 H 0.093 0.907 18 C -0.107 4.107 19 C -0.124 4.124 20 C 0.102 3.898 21 N -0.603 5.603 22 C 0.586 3.414 23 O -0.559 6.559 24 C -0.261 4.261 25 C 0.143 3.857 26 N -0.535 5.535 27 C 0.314 3.686 28 N -0.534 5.534 29 C 0.207 3.793 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.394 0.606 36 H 0.276 0.724 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.212 0.788 46 H 0.231 0.769 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -17.760 -10.656 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.237 5.237 3 C -0.073 4.073 4 C 0.233 3.767 5 O -0.492 6.492 6 N -0.214 5.214 7 C -0.457 4.457 8 H 0.100 0.900 9 C -0.214 4.214 10 N -0.564 5.564 11 Si 0.814 3.186 12 H -0.196 1.196 13 H -0.198 1.198 14 H -0.199 1.199 15 C -0.101 4.101 16 C 0.017 3.983 17 H 0.110 0.890 18 C -0.145 4.145 19 C -0.161 4.161 20 C -0.019 4.019 21 N -0.335 5.335 22 C 0.375 3.625 23 O -0.439 6.439 24 C -0.268 4.268 25 C -0.021 4.021 26 N -0.249 5.249 27 C 0.029 3.971 28 N -0.247 5.247 29 C 0.041 3.959 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.228 0.772 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.228 0.772 46 H 0.247 0.753 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.858 -17.942 -10.425 20.834 hybrid contribution 0.455 1.041 -0.299 1.175 sum -1.403 -16.901 -10.723 20.065 Atomic orbital electron populations 1.22700 0.86455 1.02867 1.01458 1.61491 1.08849 1.12172 1.41227 1.21739 1.02081 0.89305 0.94224 1.20581 0.83721 0.82188 0.90164 1.90475 1.44758 1.65207 1.48763 1.41938 1.50161 1.11650 1.17634 1.19690 1.34021 0.96289 0.95652 0.90047 1.26003 0.96402 0.96738 1.02222 1.69681 1.38378 1.12631 1.35727 0.84901 0.78176 0.77909 0.77564 1.19573 1.19803 1.19923 1.23071 1.02211 0.93327 0.91501 1.21989 0.99460 0.89744 0.87102 0.89030 1.22537 1.00380 0.96571 0.94979 1.22879 1.03614 0.96740 0.92908 1.22498 0.89915 0.93748 0.95783 1.48461 1.38002 1.40530 1.06477 1.17499 0.82638 0.80868 0.81508 1.90776 1.59493 1.47982 1.45681 1.21717 1.01585 1.05666 0.97870 1.25780 0.87329 0.86007 1.03018 1.68703 1.14828 1.18701 1.22638 1.26006 0.96513 0.91400 0.83218 1.68676 1.09185 1.09658 1.37219 1.23715 0.88725 0.88373 0.95122 0.90336 0.91886 0.93846 0.87104 0.92218 0.77231 0.91470 0.88730 0.94295 0.89948 0.89066 0.89702 0.87329 0.90025 0.90345 0.77228 0.75278 0.79273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.37 7.91 127.69 1.01 1.38 16 2 N -0.51 -14.25 4.16 -927.08 -3.86 -18.11 16 3 C 0.06 1.86 5.44 85.56 0.47 2.32 16 4 C 0.45 19.98 7.43 87.66 0.65 20.64 16 5 O -0.61 -31.11 13.95 -3.07 -0.04 -31.16 16 6 N -0.58 -28.53 5.29 -306.99 -1.62 -30.15 16 7 C -0.33 -18.03 9.68 84.04 0.81 -17.21 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 10 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 11 Si 0.99 42.21 29.55 68.60 2.03 44.24 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 C 0.03 0.60 3.89 86.30 0.34 0.93 16 16 C 0.12 2.17 2.18 45.34 0.10 2.27 16 17 H 0.09 1.64 5.07 -2.39 -0.01 1.63 16 18 C -0.11 -1.67 6.20 31.83 0.20 -1.47 16 19 C -0.12 -1.35 7.10 32.03 0.23 -1.13 16 20 C 0.10 1.49 6.88 86.86 0.60 2.09 16 21 N -0.60 -11.35 3.07 -791.98 -2.43 -13.78 16 22 C 0.59 13.49 7.63 86.78 0.66 14.16 16 23 O -0.56 -15.62 16.75 -3.89 -0.07 -15.69 16 24 C -0.26 -5.68 5.52 -19.91 -0.11 -5.79 16 25 C 0.14 3.09 6.54 85.06 0.56 3.65 16 26 N -0.53 -11.84 9.26 -198.97 -1.84 -13.68 16 27 C 0.31 5.99 12.27 180.84 2.22 8.21 16 28 N -0.53 -11.03 10.42 -198.98 -2.07 -13.11 16 29 C 0.21 4.30 10.88 85.06 0.93 5.22 16 30 H 0.08 1.90 6.54 -2.39 -0.02 1.88 16 31 H 0.06 2.34 5.79 -2.39 -0.01 2.33 16 32 H 0.04 1.20 5.82 -2.38 -0.01 1.18 16 33 H 0.11 3.10 7.86 -2.39 -0.02 3.08 16 34 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.39 18.75 7.90 -92.71 -0.73 18.02 16 36 H 0.28 13.80 8.31 -92.70 -0.77 13.03 16 37 H 0.09 1.93 7.78 -2.39 -0.02 1.91 16 38 H 0.04 0.89 4.33 -2.39 -0.01 0.88 16 39 H 0.08 1.42 7.84 -2.38 -0.02 1.40 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 44 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.21 4.38 0.48 -3.13 0.00 4.38 16 46 H 0.23 2.73 8.06 -2.91 -0.02 2.70 16 47 H 0.19 3.40 7.75 -2.91 -0.02 3.37 16 Total: -1.00 -69.37 371.34 -0.19 -69.57 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: 0.31 Total: 35.80 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 9.12 Total: 34.98 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -11.54 Total: -137.74 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -0.11 Total: -46.85 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -69.37 -0.19 -69.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674445561.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.851 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds