Wall clock time and date at job start Wed Apr 1 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00380 * 2 1 4 4 H 1.07995 * 120.00007 * 200.37030 * 3 2 1 5 5 C 1.38816 * 119.99559 * 20.36504 * 3 2 1 6 6 N 1.31617 * 119.99901 * 14.99946 * 5 3 2 7 7 Si 1.86798 * 119.99762 * 194.99272 * 5 3 2 8 8 H 1.48507 * 109.47054 * 85.00374 * 7 5 3 9 9 H 1.48495 * 109.47361 * 205.00353 * 7 5 3 10 10 H 1.48496 * 109.47500 * 325.00597 * 7 5 3 11 11 C 1.46503 * 120.00093 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47304 * 270.00060 * 11 2 1 13 13 O 1.42902 * 109.47171 * 64.99388 * 12 11 2 14 14 C 1.42903 * 113.99790 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46743 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47154 * 65.00354 * 15 14 13 17 17 C 1.34771 * 119.99958 * 179.97438 * 16 15 14 18 18 O 1.21569 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.47720 * 119.99902 * 179.97438 * 17 16 15 20 20 C 1.40256 * 119.88106 * 0.31326 * 19 17 16 21 21 C 1.36170 * 120.55379 * 180.28785 * 20 19 17 22 22 C 1.39906 * 119.97813 * 359.43052 * 21 20 19 23 23 N 1.34749 * 134.59366 * 180.25345 * 22 21 20 24 24 N 1.28638 * 109.29501 * 180.02562 * 23 22 21 25 25 N 1.28816 * 111.79225 * 359.97438 * 24 23 22 26 26 C 1.46498 * 125.94126 * 180.02562 * 25 24 23 27 27 C 1.37364 * 108.11319 * 0.02562 * 25 24 23 28 28 C 1.38618 * 134.88825 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.46922 * 275.10096 * 1 2 3 30 30 H 1.08999 * 109.47376 * 35.10026 * 1 2 3 31 31 H 1.09002 * 109.47562 * 155.10897 * 1 2 3 32 32 H 0.97006 * 119.99669 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.47476 * 149.99798 * 11 2 1 34 34 H 1.09008 * 109.47104 * 29.99403 * 11 2 1 35 35 H 1.09000 * 109.46615 * 305.00155 * 12 11 2 36 36 H 1.08992 * 109.47462 * 184.99583 * 12 11 2 37 37 H 1.08994 * 109.47126 * 60.00238 * 14 13 12 38 38 H 1.08994 * 109.47101 * 300.00076 * 14 13 12 39 39 H 1.08997 * 109.47593 * 304.99920 * 15 14 13 40 40 H 1.09000 * 109.47293 * 184.99897 * 15 14 13 41 41 H 0.96998 * 119.99925 * 359.97438 * 16 15 14 42 42 H 1.07994 * 119.72152 * 359.97438 * 20 19 17 43 43 H 1.07996 * 120.00491 * 179.70736 * 21 20 19 44 44 H 1.09004 * 109.47276 * 90.02729 * 26 25 24 45 45 H 1.09001 * 109.46922 * 210.02430 * 26 25 24 46 46 H 1.08998 * 109.47574 * 330.02803 * 26 25 24 47 47 H 1.08005 * 120.24630 * 0.07195 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5207 2.3505 0.4184 6 7 0.3877 2.2835 1.0848 7 14 2.2824 4.0126 0.0356 8 1 1.8680 4.4460 -1.3230 9 1 1.8225 5.0099 1.0351 10 1 3.7624 3.9034 0.0903 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 8 1.2060 -1.9944 2.0806 14 6 1.3325 -2.4179 3.4395 15 6 -0.0565 -2.6924 4.0194 16 7 -0.6646 -3.8244 3.3157 17 6 -1.8966 -4.2486 3.6597 18 8 -2.5033 -3.6923 4.5544 19 6 -2.5099 -5.3897 2.9498 20 6 -1.8052 -6.0339 1.9224 21 6 -2.3597 -7.0833 1.2550 22 6 -3.6381 -7.5346 1.6005 23 7 -4.4462 -8.5175 1.1573 24 7 -5.5414 -8.5040 1.8319 25 7 -5.5449 -7.5704 2.7195 26 6 -6.6332 -7.2778 3.6555 27 6 -4.3506 -6.8971 2.6357 28 6 -3.7823 -5.8258 3.3072 29 1 -0.3633 0.0914 1.0236 30 1 -0.3634 0.8408 -0.5909 31 1 -0.3634 -0.9322 -0.4325 32 1 -0.0520 3.0974 1.3769 33 1 3.1499 -1.1382 -0.5143 34 1 1.6083 -2.0283 -0.5147 35 1 2.9642 -0.9140 1.9811 36 1 3.0732 -2.6071 1.4427 37 1 1.8208 -1.6353 4.0200 38 1 1.9300 -3.3285 3.4822 39 1 -0.6829 -1.8090 3.8960 40 1 0.0326 -2.9293 5.0796 41 1 -0.1804 -4.2685 2.6021 42 1 -0.8164 -5.6916 1.6551 43 1 -1.8110 -7.5698 0.4622 44 1 -6.4899 -7.8525 4.5706 45 1 -6.6335 -6.2136 3.8911 46 1 -7.5861 -7.5497 3.2013 47 1 -4.3227 -5.3335 4.1022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676136039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:28 Heat of formation + Delta-G solvation = 68.045513 kcal Electronic energy + Delta-G solvation = -29696.302544 eV Core-core repulsion = 25496.866095 eV Total energy + Delta-G solvation = -4199.436449 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.52945 -40.11636 -37.92987 -37.46515 -35.49871 -35.23936 -34.53966 -31.65138 -31.20639 -31.15471 -29.41289 -28.31956 -27.81269 -25.71516 -24.94184 -23.87858 -23.03103 -22.31492 -21.51359 -21.00060 -20.34392 -18.66147 -18.07134 -17.09556 -17.00575 -16.80805 -16.31075 -16.12398 -15.50632 -15.04520 -14.95293 -14.64285 -14.60703 -14.17604 -13.99083 -13.77258 -13.66622 -13.37934 -13.32385 -13.19568 -12.75567 -12.48561 -12.24582 -12.18358 -12.04768 -11.58382 -11.42293 -11.16921 -11.06523 -10.92478 -10.87512 -10.76754 -10.51955 -10.14652 -10.06820 -9.92139 -9.78702 -9.38996 -9.09689 -9.05720 -8.71024 -8.47978 -6.70225 -5.65585 -3.09697 -0.01126 0.80705 1.74985 1.78343 2.68819 2.99839 3.40409 3.46092 3.46610 3.47718 3.57798 4.02133 4.11043 4.25127 4.41957 4.50431 4.54532 4.63453 4.65366 4.79882 4.90634 4.94704 5.13657 5.24540 5.44997 5.48227 5.54491 5.61093 5.63082 5.67902 5.79689 5.85090 5.97065 6.06020 6.06843 6.17726 6.18248 6.21273 6.36494 6.52784 6.75340 6.93983 7.40281 7.50847 7.74677 7.82828 7.93794 7.96832 8.08150 8.44801 9.30026 9.94648 10.43996 11.38415 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002012 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.849741 B =13910.383880 C =13945.944675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.901 5.901 7 Si 0.901 3.099 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.152 3.848 12 C 0.042 3.958 13 O -0.367 6.367 14 C 0.049 3.951 15 C 0.124 3.876 16 N -0.709 5.709 17 C 0.559 3.441 18 O -0.539 6.539 19 C -0.098 4.098 20 C -0.088 4.088 21 C -0.053 4.053 22 C 0.028 3.972 23 N -0.257 5.257 24 N -0.016 5.016 25 N -0.315 5.315 26 C 0.085 3.915 27 C 0.013 3.987 28 C -0.033 4.033 29 H 0.033 0.967 30 H 0.035 0.965 31 H -0.005 1.005 32 H 0.251 0.749 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.404 0.596 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 -21.098 6.830 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.318 5.318 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.546 5.546 7 Si 0.732 3.268 8 H -0.215 1.215 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.024 3.976 12 C -0.037 4.037 13 O -0.286 6.286 14 C -0.028 4.028 15 C 0.001 3.999 16 N -0.361 5.361 17 C 0.346 3.654 18 O -0.417 6.417 19 C -0.105 4.105 20 C -0.110 4.110 21 C -0.075 4.075 22 C -0.098 4.098 23 N -0.131 5.131 24 N 0.003 4.997 25 N -0.116 5.116 26 C -0.056 4.056 27 C -0.106 4.106 28 C -0.056 4.056 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.240 0.760 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.882 -21.653 6.865 24.390 hybrid contribution 1.286 1.677 0.346 2.141 sum -7.597 -19.976 7.211 22.556 Atomic orbital electron populations 1.20692 0.82143 0.94740 0.99508 1.43905 1.02144 1.00246 1.85554 1.19193 0.96946 0.85175 1.37349 0.91495 1.24967 0.97922 0.98215 0.98646 1.70116 1.18686 1.26545 1.39272 0.86328 0.78531 0.84350 0.77623 1.21541 1.21856 1.20699 1.20892 0.96441 0.88882 0.91355 1.23533 0.85005 0.96942 0.98259 1.88014 1.30550 1.87330 1.22697 1.22613 0.95418 0.98582 0.86221 1.21467 0.93700 0.89336 0.95405 1.45804 1.17147 1.34280 1.38880 1.17972 0.81426 0.83027 0.83021 1.90790 1.62131 1.57632 1.31143 1.19773 0.94771 0.97576 0.98412 1.20931 1.00329 0.95072 0.94659 1.19937 0.91366 0.96271 0.99962 1.20100 0.97193 0.95917 0.96602 1.75373 0.98039 1.18944 1.20772 1.77998 1.17030 1.06815 0.97875 1.47137 1.13756 1.23114 1.27562 1.22306 0.87744 1.04047 0.91460 1.19606 0.88656 1.00060 1.02275 1.20048 0.94164 0.92792 0.98617 0.94868 0.94620 0.98683 0.93888 0.92349 0.93781 0.93285 0.95649 0.91885 0.93714 0.89769 0.90236 0.75988 0.83960 0.83615 0.88969 0.88079 0.87687 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.42 8.62 59.85 0.52 4.93 16 2 N -0.60 -14.95 2.89 -181.11 -0.52 -15.47 16 3 C -0.26 -7.01 9.68 -15.06 -0.15 -7.16 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.03 5.06 -17.43 -0.09 -0.06 16 6 N -0.90 -26.54 10.67 55.49 0.59 -25.94 16 7 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.15 3.01 6.11 -4.04 -0.02 2.99 16 12 C 0.04 0.74 6.28 37.16 0.23 0.97 16 13 O -0.37 -6.44 9.85 -35.23 -0.35 -6.79 16 14 C 0.05 0.66 6.07 37.16 0.23 0.89 16 15 C 0.12 1.62 6.06 -4.04 -0.02 1.60 16 16 N -0.71 -8.39 5.45 -61.29 -0.33 -8.72 16 17 C 0.56 7.24 7.77 -12.39 -0.10 7.14 16 18 O -0.54 -8.70 16.32 5.31 0.09 -8.61 16 19 C -0.10 -1.05 5.88 -104.92 -0.62 -1.67 16 20 C -0.09 -0.77 9.46 -39.57 -0.37 -1.15 16 21 C -0.05 -0.49 10.03 -39.70 -0.40 -0.89 16 22 C 0.03 0.32 7.36 -84.95 -0.63 -0.31 16 23 N -0.26 -3.29 12.42 32.09 0.40 -2.89 16 24 N -0.02 -0.19 13.07 60.35 0.79 0.60 16 25 N -0.32 -2.92 3.80 -65.54 -0.25 -3.17 16 26 C 0.09 0.35 11.40 59.85 0.68 1.03 16 27 C 0.01 0.13 6.93 -84.24 -0.58 -0.45 16 28 C -0.03 -0.34 9.59 -39.10 -0.38 -0.72 16 29 H 0.03 0.92 7.40 -51.93 -0.38 0.54 16 30 H 0.04 0.97 7.21 -51.93 -0.37 0.60 16 31 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 34 H 0.04 0.80 7.86 -51.92 -0.41 0.40 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.40 3.94 6.47 -40.82 -0.26 3.68 16 42 H 0.14 0.91 6.36 -52.49 -0.33 0.58 16 43 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.15 1.34 7.63 -52.48 -0.40 0.94 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -35.95 397.98 -7.08 -43.03 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.76 Total: -2.03 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -1.70 Total: 7.15 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.67 Total: -55.60 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.26 Total: -15.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.95 -7.08 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676136039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.071 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds