Wall clock time and date at job start Wed Apr 1 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36939 * 120.00380 * 2 1 4 4 H 1.07995 * 120.00007 * 200.37030 * 3 2 1 5 5 C 1.38816 * 119.99559 * 20.36504 * 3 2 1 6 6 N 1.31617 * 119.99901 * 14.99946 * 5 3 2 7 7 Si 1.86798 * 119.99762 * 194.99272 * 5 3 2 8 8 H 1.48507 * 109.47054 * 85.00374 * 7 5 3 9 9 H 1.48495 * 109.47361 * 205.00353 * 7 5 3 10 10 H 1.48496 * 109.47500 * 325.00597 * 7 5 3 11 11 C 1.46503 * 120.00093 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47304 * 270.00060 * 11 2 1 13 13 O 1.42902 * 109.47171 * 64.99388 * 12 11 2 14 14 C 1.42903 * 113.99790 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.46743 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.47154 * 65.00354 * 15 14 13 17 17 C 1.34771 * 119.99958 * 179.97438 * 16 15 14 18 18 O 1.21569 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.47720 * 119.99902 * 179.97438 * 17 16 15 20 20 C 1.40256 * 119.88106 * 0.31326 * 19 17 16 21 21 C 1.36170 * 120.55379 * 180.28785 * 20 19 17 22 22 C 1.39906 * 119.97813 * 359.43052 * 21 20 19 23 23 N 1.34749 * 134.59366 * 180.25345 * 22 21 20 24 24 N 1.28638 * 109.29501 * 180.02562 * 23 22 21 25 25 N 1.28816 * 111.79225 * 359.97438 * 24 23 22 26 26 C 1.46498 * 125.94126 * 180.02562 * 25 24 23 27 27 C 1.37364 * 108.11319 * 0.02562 * 25 24 23 28 28 C 1.38618 * 134.88825 * 179.97438 * 27 25 24 29 29 H 1.09004 * 109.46922 * 275.10096 * 1 2 3 30 30 H 1.08999 * 109.47376 * 35.10026 * 1 2 3 31 31 H 1.09002 * 109.47562 * 155.10897 * 1 2 3 32 32 H 0.97006 * 119.99669 * 180.02562 * 6 5 3 33 33 H 1.08995 * 109.47476 * 149.99798 * 11 2 1 34 34 H 1.09008 * 109.47104 * 29.99403 * 11 2 1 35 35 H 1.09000 * 109.46615 * 305.00155 * 12 11 2 36 36 H 1.08992 * 109.47462 * 184.99583 * 12 11 2 37 37 H 1.08994 * 109.47126 * 60.00238 * 14 13 12 38 38 H 1.08994 * 109.47101 * 300.00076 * 14 13 12 39 39 H 1.08997 * 109.47593 * 304.99920 * 15 14 13 40 40 H 1.09000 * 109.47293 * 184.99897 * 15 14 13 41 41 H 0.96998 * 119.99925 * 359.97438 * 16 15 14 42 42 H 1.07994 * 119.72152 * 359.97438 * 20 19 17 43 43 H 1.07996 * 120.00491 * 179.70736 * 21 20 19 44 44 H 1.09004 * 109.47276 * 90.02729 * 26 25 24 45 45 H 1.09001 * 109.46922 * 210.02430 * 26 25 24 46 46 H 1.08998 * 109.47574 * 330.02803 * 26 25 24 47 47 H 1.08005 * 120.24630 * 0.07195 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5207 2.3505 0.4184 6 7 0.3877 2.2835 1.0848 7 14 2.2824 4.0126 0.0356 8 1 1.8680 4.4460 -1.3230 9 1 1.8225 5.0099 1.0351 10 1 3.7624 3.9034 0.0903 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4417 13 8 1.2060 -1.9944 2.0806 14 6 1.3325 -2.4179 3.4395 15 6 -0.0565 -2.6924 4.0194 16 7 -0.6646 -3.8244 3.3157 17 6 -1.8966 -4.2486 3.6597 18 8 -2.5033 -3.6923 4.5544 19 6 -2.5099 -5.3897 2.9498 20 6 -1.8052 -6.0339 1.9224 21 6 -2.3597 -7.0833 1.2550 22 6 -3.6381 -7.5346 1.6005 23 7 -4.4462 -8.5175 1.1573 24 7 -5.5414 -8.5040 1.8319 25 7 -5.5449 -7.5704 2.7195 26 6 -6.6332 -7.2778 3.6555 27 6 -4.3506 -6.8971 2.6357 28 6 -3.7823 -5.8258 3.3072 29 1 -0.3633 0.0914 1.0236 30 1 -0.3634 0.8408 -0.5909 31 1 -0.3634 -0.9322 -0.4325 32 1 -0.0520 3.0974 1.3769 33 1 3.1499 -1.1382 -0.5143 34 1 1.6083 -2.0283 -0.5147 35 1 2.9642 -0.9140 1.9811 36 1 3.0732 -2.6071 1.4427 37 1 1.8208 -1.6353 4.0200 38 1 1.9300 -3.3285 3.4822 39 1 -0.6829 -1.8090 3.8960 40 1 0.0326 -2.9293 5.0796 41 1 -0.1804 -4.2685 2.6021 42 1 -0.8164 -5.6916 1.6551 43 1 -1.8110 -7.5698 0.4622 44 1 -6.4899 -7.8525 4.5706 45 1 -6.6335 -6.2136 3.8911 46 1 -7.5861 -7.5497 3.2013 47 1 -4.3227 -5.3335 4.1022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676136039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:27 Heat of formation + Delta-G solvation = 42.201684 kcal Electronic energy + Delta-G solvation = -29697.423217 eV Core-core repulsion = 25496.866095 eV Total energy + Delta-G solvation = -4200.557121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -44.29967 -41.09653 -39.08769 -38.45870 -37.19084 -35.95976 -35.76214 -33.40547 -32.22805 -31.90366 -30.67298 -29.32859 -28.81964 -27.78872 -25.81864 -24.77821 -24.64735 -23.34850 -22.23394 -22.10069 -21.93166 -19.53714 -18.78246 -18.74156 -17.86222 -17.81560 -17.47834 -17.29587 -16.86936 -16.42629 -16.14980 -15.77129 -15.48226 -15.31244 -15.18610 -15.08151 -14.68515 -14.46423 -14.35282 -14.07888 -13.81389 -13.80473 -13.27526 -13.16102 -13.06307 -12.98133 -12.80555 -12.68920 -12.49653 -12.44717 -12.29134 -11.98110 -11.85441 -11.84056 -11.75840 -11.63360 -11.19164 -10.58437 -10.33234 -10.28611 -10.03244 -9.45682 -8.72818 -7.75716 -5.21016 -0.81296 0.06885 0.95270 1.14130 1.47659 1.49873 1.57206 1.78112 2.06691 2.54890 2.62937 2.82864 2.92246 3.36722 3.43778 3.54104 3.59077 3.80578 3.90676 3.94339 3.99155 4.22683 4.23701 4.25312 4.41770 4.51277 4.55756 4.58926 4.64631 4.67308 4.74030 4.79570 4.84159 4.93652 4.98158 5.05482 5.08743 5.13330 5.26021 5.33479 5.40622 5.40780 5.49644 5.69099 5.85915 6.37262 6.47145 6.51599 7.11829 7.13335 7.21235 7.96183 8.40369 9.27146 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.002012 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.849741 B =13910.383880 C =13945.944675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.613 5.613 3 C -0.257 4.257 4 H 0.075 0.925 5 C -0.059 4.059 6 N -0.936 5.936 7 Si 0.964 3.036 8 H -0.288 1.288 9 H -0.300 1.300 10 H -0.267 1.267 11 C 0.144 3.856 12 C 0.052 3.948 13 O -0.393 6.393 14 C 0.052 3.948 15 C 0.130 3.870 16 N -0.700 5.700 17 C 0.559 3.441 18 O -0.578 6.578 19 C -0.109 4.109 20 C -0.078 4.078 21 C -0.055 4.055 22 C 0.012 3.988 23 N -0.289 5.289 24 N -0.030 5.030 25 N -0.305 5.305 26 C 0.071 3.929 27 C 0.001 3.999 28 C -0.031 4.031 29 H 0.001 0.999 30 H 0.005 0.995 31 H 0.022 0.978 32 H 0.243 0.757 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.416 0.584 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 -22.573 6.523 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.336 5.336 3 C -0.388 4.388 4 H 0.093 0.907 5 C -0.254 4.254 6 N -0.583 5.583 7 Si 0.793 3.207 8 H -0.215 1.215 9 H -0.227 1.227 10 H -0.191 1.191 11 C 0.018 3.982 12 C -0.027 4.027 13 O -0.313 6.313 14 C -0.025 4.025 15 C 0.006 3.994 16 N -0.352 5.352 17 C 0.347 3.653 18 O -0.459 6.459 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.077 4.077 22 C -0.115 4.115 23 N -0.162 5.162 24 N -0.011 5.011 25 N -0.106 5.106 26 C -0.068 4.068 27 C -0.118 4.118 28 C -0.054 4.054 29 H 0.019 0.981 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.255 0.745 42 H 0.187 0.813 43 H 0.186 0.814 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.357 -23.186 6.533 25.187 hybrid contribution 0.789 2.041 0.471 2.238 sum -6.568 -21.145 7.004 23.223 Atomic orbital electron populations 1.20326 0.82947 0.94698 0.97143 1.44132 1.02059 1.01700 1.85736 1.19575 0.97210 0.86241 1.35743 0.90683 1.25732 0.98721 1.01590 0.99312 1.70299 1.20308 1.26668 1.41073 0.85322 0.78427 0.80129 0.76805 1.21544 1.22708 1.19125 1.21164 0.96783 0.87004 0.93288 1.23246 0.85373 0.98050 0.96034 1.87967 1.30879 1.87760 1.24663 1.22729 0.95789 0.99893 0.84105 1.21337 0.93055 0.88431 0.96588 1.45708 1.16940 1.33626 1.38920 1.18283 0.81353 0.83144 0.82522 1.90769 1.63090 1.59053 1.32981 1.19692 0.95233 0.97386 0.99298 1.21139 1.01054 0.94297 0.93426 1.20222 0.90732 0.96278 1.00444 1.20534 0.98127 0.95876 0.96964 1.75319 0.98783 1.20164 1.21982 1.77911 1.17006 1.07649 0.98536 1.47548 1.14155 1.21857 1.27052 1.22786 0.87092 1.05470 0.91455 1.19693 0.89273 1.00347 1.02458 1.20105 0.94167 0.92541 0.98547 0.98089 0.97669 0.95920 0.94755 0.91019 0.91813 0.96165 0.90910 0.92662 0.89777 0.93555 0.88562 0.74536 0.81332 0.81374 0.86985 0.86624 0.86041 0.83128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.94 8.62 127.77 1.10 11.04 16 2 N -0.61 -30.29 2.89 -726.92 -2.10 -32.39 16 3 C -0.26 -13.92 9.68 84.03 0.81 -13.11 16 4 H 0.08 3.86 7.86 -2.91 -0.02 3.84 16 5 C -0.06 -3.32 5.06 84.86 0.43 -2.89 16 6 N -0.94 -56.63 10.67 21.65 0.23 -56.40 16 7 Si 0.96 45.33 29.58 68.60 2.03 47.36 16 8 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 9 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 C 0.14 5.30 6.11 86.38 0.53 5.83 16 12 C 0.05 1.68 6.28 71.98 0.45 2.13 16 13 O -0.39 -13.06 9.85 -148.98 -1.47 -14.53 16 14 C 0.05 1.28 6.07 71.98 0.44 1.72 16 15 C 0.13 3.29 6.06 86.38 0.52 3.81 16 16 N -0.70 -15.45 5.45 -466.09 -2.54 -17.99 16 17 C 0.56 14.05 7.77 86.75 0.67 14.72 16 18 O -0.58 -18.79 16.32 -3.93 -0.06 -18.86 16 19 C -0.11 -2.20 5.88 -20.06 -0.12 -2.32 16 20 C -0.08 -1.19 9.46 22.28 0.21 -0.98 16 21 C -0.05 -0.91 10.03 22.19 0.22 -0.69 16 22 C 0.01 0.26 7.36 39.75 0.29 0.55 16 23 N -0.29 -7.33 12.42 -52.39 -0.65 -7.98 16 24 N -0.03 -0.69 13.07 37.02 0.48 -0.21 16 25 N -0.30 -5.40 3.80 -361.27 -1.37 -6.78 16 26 C 0.07 0.48 11.40 127.77 1.46 1.94 16 27 C 0.00 0.03 6.93 39.02 0.27 0.30 16 28 C -0.03 -0.61 9.59 22.58 0.22 -0.39 16 29 H 0.00 0.04 7.40 -2.38 -0.02 0.03 16 30 H 0.00 0.26 7.21 -2.39 -0.02 0.24 16 31 H 0.02 1.00 7.84 -2.39 -0.02 0.98 16 32 H 0.24 14.44 8.31 -92.70 -0.77 13.67 16 33 H 0.07 2.44 8.03 -2.39 -0.02 2.42 16 34 H 0.06 2.10 7.86 -2.38 -0.02 2.08 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.42 6.94 6.47 -92.71 -0.60 6.34 16 42 H 0.17 1.58 6.36 -2.91 -0.02 1.56 16 43 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 45 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.15 2.72 7.63 -2.91 -0.02 2.70 16 Total: -1.00 -80.08 397.98 2.45 -77.63 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.40 Total: 8.47 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 7.51 Total: 21.66 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -5.95 Total: -121.73 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.53 Total: -33.38 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -80.08 2.45 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676136039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.831 kcal (2) G-P(sol) polarization free energy of solvation -80.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds