Wall clock time and date at job start Wed Apr 1 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36250 * 126.29316 * 2 1 4 4 N 1.30137 * 110.04712 * 180.25955 * 3 2 1 5 5 C 1.35702 * 109.50049 * 0.02562 * 4 3 2 6 6 C 1.39478 * 134.43196 * 180.02562 * 5 4 3 7 7 N 1.31765 * 120.63021 * 179.97438 * 6 5 4 8 8 C 1.31942 * 122.60540 * 0.02562 * 7 6 5 9 9 C 1.39374 * 121.01380 * 0.02745 * 8 7 6 10 10 C 1.47543 * 120.75327 * 179.97438 * 9 8 7 11 11 O 1.21591 * 119.99866 * 143.11277 * 10 9 8 12 12 N 1.34777 * 119.99555 * 323.11053 * 10 9 8 13 13 C 1.46504 * 119.99430 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46645 * 180.02562 * 13 12 10 15 15 O 1.42896 * 109.47243 * 64.99957 * 14 13 12 16 16 C 1.42903 * 114.00101 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46983 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47078 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.47414 * 179.97438 * 18 17 16 20 20 C 1.36937 * 119.99798 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00174 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99470 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00146 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99735 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47240 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47218 * 120.00303 * 24 22 20 27 27 H 1.48506 * 109.47179 * 239.99784 * 24 22 20 28 28 C 1.36916 * 126.29984 * 180.30862 * 2 1 3 29 29 H 1.09008 * 109.46949 * 263.66991 * 1 2 3 30 30 H 1.08996 * 109.47462 * 23.67228 * 1 2 3 31 31 H 1.09001 * 109.47289 * 143.67148 * 1 2 3 32 32 H 1.07991 * 124.98270 * 0.26226 * 3 2 1 33 33 H 1.07996 * 119.68411 * 359.97253 * 6 5 4 34 34 H 1.07999 * 119.49416 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00397 * 0.02562 * 12 10 9 36 36 H 1.08997 * 109.47293 * 300.00143 * 13 12 10 37 37 H 1.08997 * 109.47136 * 60.00219 * 13 12 10 38 38 H 1.09000 * 109.46904 * 185.00178 * 14 13 12 39 39 H 1.08997 * 109.47540 * 304.99843 * 14 13 12 40 40 H 1.09005 * 109.47333 * 300.00027 * 16 15 14 41 41 H 1.08995 * 109.46815 * 59.99951 * 16 15 14 42 42 H 1.08995 * 109.47514 * 300.00197 * 17 16 15 43 43 H 1.08997 * 109.47310 * 60.00720 * 17 16 15 44 44 H 1.08995 * 109.47277 * 300.00548 * 18 17 16 45 45 H 1.09002 * 109.46960 * 60.00039 * 18 17 16 46 46 H 0.96998 * 119.99382 * 0.02562 * 19 18 17 47 47 H 0.97002 * 119.99901 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0982 0.0000 4 7 3.5209 0.7341 -0.0055 5 6 3.5979 -0.6207 -0.0100 6 6 4.6477 -1.5390 -0.0161 7 7 4.4066 -2.8344 -0.0189 8 6 3.1837 -3.3299 -0.0167 9 6 2.0696 -2.4925 -0.0117 10 6 0.7047 -3.0528 -0.0098 11 8 -0.1760 -2.5062 0.6259 12 7 0.4341 -4.1705 -0.7128 13 6 -0.9213 -4.7265 -0.7113 14 6 -0.9568 -5.9856 -1.5798 15 8 -0.1338 -6.9942 -0.9905 16 6 -0.0975 -8.2184 -1.7269 17 6 0.8081 -9.2197 -1.0072 18 6 0.8464 -10.5306 -1.7952 19 7 1.7141 -11.4893 -1.1065 20 6 1.9031 -12.7405 -1.6299 21 1 1.4124 -13.0207 -2.5502 22 6 2.7248 -13.6490 -0.9770 23 7 3.3225 -13.3077 0.1449 24 14 2.9822 -15.3561 -1.6906 25 1 2.2054 -15.4887 -2.9492 26 1 4.4251 -15.5609 -1.9761 27 1 2.5214 -16.3755 -0.7140 28 6 2.2756 -1.1034 -0.0059 29 1 -0.3633 -0.1133 1.0215 30 1 -0.3634 0.9411 -0.4126 31 1 -0.3634 -0.8279 -0.6088 32 1 1.9249 2.1209 0.0041 33 1 5.6680 -1.1850 -0.0186 34 1 3.0439 -4.4008 -0.0188 35 1 1.1368 -4.6067 -1.2196 36 1 -1.2085 -4.9810 0.3089 37 1 -1.6170 -3.9890 -1.1113 38 1 -1.9820 -6.3490 -1.6511 39 1 -0.5849 -5.7499 -2.5769 40 1 -1.1050 -8.6280 -1.8008 41 1 0.2920 -8.0292 -2.7271 42 1 1.8155 -8.8104 -0.9329 43 1 0.4180 -9.4089 -0.0071 44 1 -0.1611 -10.9397 -1.8692 45 1 1.2362 -10.3419 -2.7955 46 1 2.1545 -11.2378 -0.2797 47 1 3.8964 -13.9428 0.6013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676183964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:06 Heat of formation + Delta-G solvation = 16.621724 kcal Electronic energy + Delta-G solvation = -28921.169815 eV Core-core repulsion = 24719.503464 eV Total energy + Delta-G solvation = -4201.666351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.92897 -40.15342 -38.81340 -38.25230 -35.58282 -34.87941 -34.62252 -32.54781 -32.14683 -30.64391 -30.04256 -28.98674 -27.64668 -25.30950 -24.95793 -23.41232 -23.21048 -22.55592 -22.01662 -20.89059 -20.61867 -18.38946 -18.11343 -17.65762 -17.06802 -16.98847 -16.68343 -16.51392 -15.92974 -15.78413 -15.43138 -14.99614 -14.84831 -14.56651 -14.28509 -14.22309 -14.07450 -13.73360 -13.48111 -13.18876 -13.05933 -13.04822 -12.86709 -12.52552 -12.27582 -11.76958 -11.36059 -11.06326 -10.99804 -10.92558 -10.79236 -10.71700 -10.67044 -10.61750 -10.03237 -9.87255 -9.72555 -9.70557 -9.51899 -9.39646 -8.88717 -8.78681 -6.93461 -5.76688 -3.06113 0.00326 0.93001 1.97917 2.05274 2.47854 2.70289 3.40656 3.43467 3.43751 3.49383 3.51347 3.62623 3.87171 4.02614 4.22131 4.35859 4.50418 4.53524 4.60780 4.63665 4.77901 4.79984 4.92971 5.03342 5.14302 5.19234 5.20713 5.22698 5.31455 5.48889 5.54284 5.56425 5.59303 5.79083 5.90400 5.95702 6.00033 6.04441 6.23523 6.33600 6.46842 6.78696 6.83417 7.02615 7.07973 7.15597 7.53514 7.69581 7.71335 8.41938 9.53034 10.10628 10.45261 11.46236 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.001683 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.390789 B =16631.929107 C =18054.666422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.478 5.478 3 C 0.261 3.739 4 N -0.476 5.476 5 C -0.018 4.018 6 C 0.200 3.800 7 N -0.485 5.485 8 C 0.142 3.858 9 C -0.179 4.179 10 C 0.566 3.434 11 O -0.541 6.541 12 N -0.712 5.712 13 C 0.123 3.877 14 C 0.047 3.953 15 O -0.387 6.387 16 C 0.068 3.932 17 C -0.125 4.125 18 C 0.157 3.843 19 N -0.733 5.733 20 C -0.242 4.242 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.121 3.879 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.221 0.779 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.408 0.592 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 32.655 -3.284 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.166 5.166 3 C -0.025 4.025 4 N -0.195 5.195 5 C -0.139 4.139 6 C 0.034 3.966 7 N -0.195 5.195 8 C -0.010 4.010 9 C -0.188 4.188 10 C 0.353 3.647 11 O -0.420 6.420 12 N -0.364 5.364 13 C 0.000 4.000 14 C -0.030 4.030 15 O -0.306 6.306 16 C -0.008 4.008 17 C -0.163 4.163 18 C 0.029 3.971 19 N -0.377 5.377 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.001 3.999 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.237 0.763 33 H 0.189 0.811 34 H 0.189 0.811 35 H 0.244 0.756 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.036 0.964 45 H 0.037 0.963 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.711 32.796 -2.788 33.805 hybrid contribution -1.067 -1.046 -0.502 1.577 sum -8.778 31.750 -3.290 33.105 Atomic orbital electron populations 1.22250 0.74409 1.03955 1.05159 1.45239 1.08397 1.04919 1.58014 1.25621 0.84939 0.93573 0.98410 1.70489 1.18314 1.09914 1.20781 1.20163 0.92786 0.91600 1.09322 1.22399 0.98369 0.86219 0.89602 1.67760 1.23194 1.13771 1.14745 1.22909 0.85854 1.00095 0.92118 1.19823 0.95408 0.90273 1.13259 1.17939 0.87259 0.80453 0.79094 1.90773 1.47652 1.60567 1.43003 1.45890 1.12978 1.27000 1.50510 1.21456 0.83420 0.93238 1.01895 1.22707 0.95949 0.88265 0.96075 1.87925 1.68564 1.23413 1.50717 1.22523 0.99667 0.83863 0.94791 1.21673 0.99708 0.94563 1.00328 1.20509 0.94286 0.87916 0.94411 1.42341 1.55407 1.11608 1.28381 1.19275 1.23144 0.89454 1.05402 0.91084 1.24770 1.00151 0.98650 0.97483 1.69675 1.35102 1.35251 1.18027 0.86098 0.77504 0.84414 0.78046 1.20556 1.21811 1.21829 1.18639 0.91671 0.88532 1.01055 0.89497 0.89715 0.89207 0.76267 0.81146 0.81138 0.75627 0.90053 0.89937 0.91415 0.92615 0.93199 0.93215 0.91087 0.91137 0.96363 0.96338 0.78158 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 9.39 59.85 0.56 1.05 16 2 N -0.48 -3.86 3.18 -122.87 -0.39 -4.25 16 3 C 0.26 1.78 12.50 -89.56 -1.12 0.66 16 4 N -0.48 -4.69 11.28 -12.01 -0.14 -4.83 16 5 C -0.02 -0.19 7.27 -84.74 -0.62 -0.80 16 6 C 0.20 1.95 11.25 -17.12 -0.19 1.76 16 7 N -0.49 -5.20 10.30 -12.65 -0.13 -5.33 16 8 C 0.14 1.39 10.50 -17.08 -0.18 1.21 16 9 C -0.18 -1.82 5.79 -104.86 -0.61 -2.42 16 10 C 0.57 5.72 6.88 -12.47 -0.09 5.63 16 11 O -0.54 -6.45 13.25 5.29 0.07 -6.38 16 12 N -0.71 -5.92 5.42 -61.34 -0.33 -6.25 16 13 C 0.12 0.95 6.06 -4.04 -0.02 0.93 16 14 C 0.05 0.37 6.07 37.16 0.23 0.59 16 15 O -0.39 -4.43 10.29 -35.23 -0.36 -4.79 16 16 C 0.07 0.83 5.94 37.16 0.22 1.05 16 17 C -0.12 -2.00 5.70 -26.73 -0.15 -2.15 16 18 C 0.16 3.11 6.26 -4.04 -0.03 3.08 16 19 N -0.73 -18.88 5.60 -59.91 -0.34 -19.22 16 20 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 24 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.12 1.26 6.77 -83.81 -0.57 0.69 16 29 H 0.09 0.58 7.79 -51.92 -0.40 0.18 16 30 H 0.08 0.20 8.13 -51.93 -0.42 -0.22 16 31 H 0.09 0.65 6.13 -51.93 -0.32 0.33 16 32 H 0.22 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.17 1.38 7.70 -52.49 -0.40 0.97 16 35 H 0.41 2.97 7.75 -40.82 -0.32 2.65 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.38 10.42 7.67 -40.82 -0.31 10.11 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 397.97 15.07 6.00 6.00 Total: -1.00 -36.45 397.97 -9.52 -45.98 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.80 Total: 5.64 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -2.81 Total: 3.77 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -0.60 Total: -67.68 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.29 Total: -11.17 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.45 -9.52 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676183964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.601 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds