Wall clock time and date at job start Wed Apr 1 2020 05:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36250 * 126.29316 * 2 1 4 4 N 1.30137 * 110.04712 * 180.25955 * 3 2 1 5 5 C 1.35702 * 109.50049 * 0.02562 * 4 3 2 6 6 C 1.39478 * 134.43196 * 180.02562 * 5 4 3 7 7 N 1.31765 * 120.63021 * 179.97438 * 6 5 4 8 8 C 1.31942 * 122.60540 * 0.02562 * 7 6 5 9 9 C 1.39374 * 121.01380 * 0.02745 * 8 7 6 10 10 C 1.47543 * 120.75327 * 179.97438 * 9 8 7 11 11 O 1.21591 * 119.99866 * 143.11277 * 10 9 8 12 12 N 1.34777 * 119.99555 * 323.11053 * 10 9 8 13 13 C 1.46504 * 119.99430 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.46645 * 180.02562 * 13 12 10 15 15 O 1.42896 * 109.47243 * 64.99957 * 14 13 12 16 16 C 1.42903 * 114.00101 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.46983 * 180.02562 * 16 15 14 18 18 C 1.53001 * 109.47078 * 179.97438 * 17 16 15 19 19 N 1.46503 * 109.47414 * 179.97438 * 18 17 16 20 20 C 1.36937 * 119.99798 * 180.02562 * 19 18 17 21 21 H 1.07996 * 120.00174 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99470 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00146 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99735 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47240 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47218 * 120.00303 * 24 22 20 27 27 H 1.48506 * 109.47179 * 239.99784 * 24 22 20 28 28 C 1.36916 * 126.29984 * 180.30862 * 2 1 3 29 29 H 1.09008 * 109.46949 * 263.66991 * 1 2 3 30 30 H 1.08996 * 109.47462 * 23.67228 * 1 2 3 31 31 H 1.09001 * 109.47289 * 143.67148 * 1 2 3 32 32 H 1.07991 * 124.98270 * 0.26226 * 3 2 1 33 33 H 1.07996 * 119.68411 * 359.97253 * 6 5 4 34 34 H 1.07999 * 119.49416 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00397 * 0.02562 * 12 10 9 36 36 H 1.08997 * 109.47293 * 300.00143 * 13 12 10 37 37 H 1.08997 * 109.47136 * 60.00219 * 13 12 10 38 38 H 1.09000 * 109.46904 * 185.00178 * 14 13 12 39 39 H 1.08997 * 109.47540 * 304.99843 * 14 13 12 40 40 H 1.09005 * 109.47333 * 300.00027 * 16 15 14 41 41 H 1.08995 * 109.46815 * 59.99951 * 16 15 14 42 42 H 1.08995 * 109.47514 * 300.00197 * 17 16 15 43 43 H 1.08997 * 109.47310 * 60.00720 * 17 16 15 44 44 H 1.08995 * 109.47277 * 300.00548 * 18 17 16 45 45 H 1.09002 * 109.46960 * 60.00039 * 18 17 16 46 46 H 0.96998 * 119.99382 * 0.02562 * 19 18 17 47 47 H 0.97002 * 119.99901 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2715 1.0982 0.0000 4 7 3.5209 0.7341 -0.0055 5 6 3.5979 -0.6207 -0.0100 6 6 4.6477 -1.5390 -0.0161 7 7 4.4066 -2.8344 -0.0189 8 6 3.1837 -3.3299 -0.0167 9 6 2.0696 -2.4925 -0.0117 10 6 0.7047 -3.0528 -0.0098 11 8 -0.1760 -2.5062 0.6259 12 7 0.4341 -4.1705 -0.7128 13 6 -0.9213 -4.7265 -0.7113 14 6 -0.9568 -5.9856 -1.5798 15 8 -0.1338 -6.9942 -0.9905 16 6 -0.0975 -8.2184 -1.7269 17 6 0.8081 -9.2197 -1.0072 18 6 0.8464 -10.5306 -1.7952 19 7 1.7141 -11.4893 -1.1065 20 6 1.9031 -12.7405 -1.6299 21 1 1.4124 -13.0207 -2.5502 22 6 2.7248 -13.6490 -0.9770 23 7 3.3225 -13.3077 0.1449 24 14 2.9822 -15.3561 -1.6906 25 1 2.2054 -15.4887 -2.9492 26 1 4.4251 -15.5609 -1.9761 27 1 2.5214 -16.3755 -0.7140 28 6 2.2756 -1.1034 -0.0059 29 1 -0.3633 -0.1133 1.0215 30 1 -0.3634 0.9411 -0.4126 31 1 -0.3634 -0.8279 -0.6088 32 1 1.9249 2.1209 0.0041 33 1 5.6680 -1.1850 -0.0186 34 1 3.0439 -4.4008 -0.0188 35 1 1.1368 -4.6067 -1.2196 36 1 -1.2085 -4.9810 0.3089 37 1 -1.6170 -3.9890 -1.1113 38 1 -1.9820 -6.3490 -1.6511 39 1 -0.5849 -5.7499 -2.5769 40 1 -1.1050 -8.6280 -1.8008 41 1 0.2920 -8.0292 -2.7271 42 1 1.8155 -8.8104 -0.9329 43 1 0.4180 -9.4089 -0.0071 44 1 -0.1611 -10.9397 -1.8692 45 1 1.2362 -10.3419 -2.7955 46 1 2.1545 -11.2378 -0.2797 47 1 3.8964 -13.9428 0.6013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676183964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:04 Heat of formation + Delta-G solvation = -9.769810 kcal Electronic energy + Delta-G solvation = -28922.314238 eV Core-core repulsion = 24719.503464 eV Total energy + Delta-G solvation = -4202.810774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.57271 -40.89473 -39.52985 -39.11546 -37.04801 -35.92388 -35.26393 -34.13687 -33.03493 -31.73972 -31.15563 -29.96966 -28.18990 -26.81753 -25.81543 -24.30327 -24.11487 -23.81508 -22.69727 -22.28612 -21.32596 -19.17598 -19.03920 -18.74689 -18.34505 -17.83440 -17.45526 -17.17968 -16.77576 -16.61399 -16.53010 -16.12087 -15.68790 -15.59213 -15.38378 -15.23898 -15.02960 -14.81293 -14.71603 -14.45323 -14.08786 -13.68676 -13.52465 -13.31930 -13.15216 -13.13494 -12.82166 -12.58562 -12.38106 -12.06535 -12.01230 -11.92006 -11.74180 -11.73920 -11.69949 -11.36258 -10.95476 -10.64435 -10.51292 -10.22929 -10.07559 -9.47981 -9.02194 -7.96123 -5.26104 -0.69655 0.19970 1.31599 1.47925 1.49274 1.50052 1.59462 1.78373 2.00825 2.50516 2.65801 2.68869 3.01336 3.24072 3.37840 3.39100 3.65397 3.75097 3.85447 3.91564 4.04233 4.06907 4.10361 4.20723 4.31618 4.36766 4.37973 4.43053 4.52438 4.53612 4.62193 4.72244 4.74602 4.77613 4.82294 4.87551 4.94374 5.14253 5.27104 5.31457 5.34376 5.35254 5.49372 5.94854 6.23398 6.27811 6.33180 6.52401 6.81712 6.98514 7.31929 8.07849 8.30159 9.27897 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.001683 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.390789 B =16631.929107 C =18054.666422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.480 5.480 3 C 0.277 3.723 4 N -0.508 5.508 5 C -0.033 4.033 6 C 0.192 3.808 7 N -0.504 5.504 8 C 0.136 3.864 9 C -0.185 4.185 10 C 0.567 3.433 11 O -0.563 6.563 12 N -0.705 5.705 13 C 0.125 3.875 14 C 0.047 3.953 15 O -0.406 6.406 16 C 0.079 3.921 17 C -0.115 4.115 18 C 0.154 3.846 19 N -0.750 5.750 20 C -0.248 4.248 21 H 0.080 0.920 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.100 3.900 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.269 0.731 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.025 0.975 45 H 0.028 0.972 46 H 0.373 0.627 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 33.937 -4.937 35.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.168 5.168 3 C -0.009 4.009 4 N -0.227 5.227 5 C -0.153 4.153 6 C 0.027 3.973 7 N -0.214 5.214 8 C -0.016 4.016 9 C -0.194 4.194 10 C 0.353 3.647 11 O -0.443 6.443 12 N -0.356 5.356 13 C 0.002 3.998 14 C -0.029 4.029 15 O -0.326 6.326 16 C 0.002 3.998 17 C -0.153 4.153 18 C 0.028 3.972 19 N -0.393 5.393 20 C -0.380 4.380 21 H 0.097 0.903 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.806 3.194 25 H -0.187 1.187 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.021 4.021 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.093 0.907 32 H 0.285 0.715 33 H 0.206 0.794 34 H 0.199 0.801 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.045 0.955 46 H 0.205 0.795 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.257 34.093 -4.489 35.612 hybrid contribution -0.677 -1.305 0.001 1.470 sum -9.935 32.788 -4.488 34.553 Atomic orbital electron populations 1.22341 0.73115 1.05575 1.04506 1.45498 1.09193 1.04534 1.57535 1.26620 0.83975 0.94938 0.95322 1.70489 1.20095 1.09439 1.22707 1.20383 0.93099 0.92274 1.09564 1.22704 0.99275 0.86013 0.89301 1.67771 1.23659 1.14382 1.15575 1.23083 0.85738 1.00632 0.92174 1.19871 0.95439 0.90535 1.13577 1.17950 0.87010 0.80697 0.79009 1.90757 1.48177 1.61339 1.44069 1.45883 1.13521 1.26341 1.49861 1.21510 0.83286 0.93774 1.01214 1.22888 0.96444 0.87027 0.96552 1.87882 1.69639 1.23685 1.51417 1.22299 0.99296 0.83547 0.94659 1.21482 1.00279 0.93958 0.99538 1.20685 0.93302 0.88517 0.94726 1.42618 1.56240 1.12094 1.28358 1.19722 1.22339 0.90514 1.05384 0.90251 1.25656 1.00570 1.02752 0.98142 1.69838 1.36250 1.36475 1.19620 0.85015 0.77188 0.79414 0.77769 1.18743 1.21990 1.22007 1.18908 0.92351 0.89262 1.01555 0.90575 0.85609 0.90709 0.71520 0.79399 0.80118 0.75000 0.91694 0.88166 0.89666 0.90735 0.91952 0.91549 0.92009 0.92513 0.95662 0.95452 0.79540 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 9.39 127.77 1.20 2.06 16 2 N -0.48 -7.15 3.18 -542.64 -1.73 -8.88 16 3 C 0.28 3.22 12.50 179.98 2.25 5.47 16 4 N -0.51 -9.57 11.28 -191.91 -2.17 -11.74 16 5 C -0.03 -0.69 7.27 39.46 0.29 -0.40 16 6 C 0.19 3.86 11.25 85.00 0.96 4.81 16 7 N -0.50 -11.13 10.30 -193.92 -2.00 -13.13 16 8 C 0.14 2.74 10.50 84.95 0.89 3.63 16 9 C -0.19 -3.82 5.79 -20.02 -0.12 -3.94 16 10 C 0.57 11.39 6.88 86.70 0.60 11.98 16 11 O -0.56 -13.39 13.25 -4.00 -0.05 -13.45 16 12 N -0.70 -11.17 5.42 -466.26 -2.53 -13.70 16 13 C 0.13 1.75 6.06 86.38 0.52 2.27 16 14 C 0.05 0.61 6.07 71.98 0.44 1.05 16 15 O -0.41 -8.56 10.29 -148.98 -1.53 -10.09 16 16 C 0.08 1.75 5.94 71.98 0.43 2.17 16 17 C -0.11 -3.60 5.70 30.59 0.17 -3.42 16 18 C 0.15 5.98 6.26 86.38 0.54 6.52 16 19 N -0.75 -38.85 5.60 -343.45 -1.92 -40.77 16 20 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 23 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 24 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 C 0.10 2.08 6.77 39.50 0.27 2.34 16 29 H 0.08 0.95 7.79 -2.38 -0.02 0.93 16 30 H 0.13 0.18 8.13 -2.39 -0.02 0.16 16 31 H 0.07 1.01 6.13 -2.39 -0.01 1.00 16 32 H 0.27 -0.04 8.06 -2.91 -0.02 -0.06 16 33 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 34 H 0.18 3.02 7.70 -2.91 -0.02 3.00 16 35 H 0.41 5.66 7.75 -92.71 -0.72 4.95 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.37 20.69 7.67 -92.71 -0.71 19.98 16 47 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -79.87 397.97 -0.29 -80.17 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -0.42 Total: 26.20 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 9.74 Total: 17.25 kcal Atomic # 7 Polarization: -138.35 SS G_CDS: -10.06 Total: -148.41 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -1.59 Total: -23.54 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -79.87 -0.29 -80.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676183964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.396 kcal (2) G-P(sol) polarization free energy of solvation -79.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds