Wall clock time and date at job start Wed Apr 1 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99782 * 2 1 4 4 H 1.07998 * 120.00154 * 185.34773 * 3 2 1 5 5 C 1.38808 * 120.00170 * 5.34659 * 3 2 1 6 6 N 1.31618 * 120.00076 * 29.77791 * 5 3 2 7 7 Si 1.86805 * 120.00391 * 209.77579 * 5 3 2 8 8 H 1.48499 * 109.47057 * 94.99377 * 7 5 3 9 9 H 1.48490 * 109.47341 * 214.99840 * 7 5 3 10 10 H 1.48506 * 109.46796 * 334.99738 * 7 5 3 11 11 C 1.46496 * 120.00267 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47293 * 270.00037 * 11 2 1 13 13 O 1.42894 * 109.47290 * 64.99919 * 12 11 2 14 14 C 1.42899 * 114.00626 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47671 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47462 * 64.99516 * 15 14 13 17 17 C 1.46495 * 120.00235 * 270.00717 * 16 15 14 18 18 C 1.34780 * 119.99661 * 89.99599 * 16 15 14 19 19 O 1.21586 * 120.00224 * 4.74045 * 18 16 15 20 20 C 1.47534 * 119.99833 * 184.72975 * 18 16 15 21 21 C 1.39408 * 120.75999 * 316.29628 * 20 18 16 22 22 N 1.31913 * 121.02134 * 179.97438 * 21 20 18 23 23 C 1.31793 * 122.59820 * 0.02811 * 22 21 20 24 24 C 1.39436 * 120.63458 * 359.97438 * 23 22 21 25 25 N 1.35708 * 134.43749 * 179.97438 * 24 23 22 26 26 C 1.30125 * 109.50474 * 180.02562 * 25 24 23 27 27 N 1.36263 * 110.05703 * 0.22932 * 26 25 24 28 28 H 0.96996 * 126.29497 * 179.73924 * 27 26 25 29 29 C 1.36920 * 107.40441 * 359.62869 * 27 26 25 30 30 H 1.09003 * 109.47200 * 276.08763 * 1 2 3 31 31 H 1.08997 * 109.47221 * 36.08962 * 1 2 3 32 32 H 1.09001 * 109.47029 * 156.09235 * 1 2 3 33 33 H 0.97001 * 120.00222 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47217 * 150.00168 * 11 2 1 35 35 H 1.09004 * 109.47042 * 29.99968 * 11 2 1 36 36 H 1.09005 * 109.47164 * 305.00142 * 12 11 2 37 37 H 1.09003 * 109.47110 * 185.00026 * 12 11 2 38 38 H 1.09004 * 109.47233 * 59.99270 * 14 13 12 39 39 H 1.09001 * 109.46642 * 300.00003 * 14 13 12 40 40 H 1.09005 * 109.46875 * 304.99785 * 15 14 13 41 41 H 1.09002 * 109.47413 * 184.99870 * 15 14 13 42 42 H 1.09003 * 109.47112 * 271.51661 * 17 16 15 43 43 H 1.08995 * 109.47414 * 31.52010 * 17 16 15 44 44 H 1.09002 * 109.47550 * 151.52395 * 17 16 15 45 45 H 1.08005 * 119.49123 * 359.97312 * 21 20 18 46 46 H 1.08005 * 119.68198 * 179.97438 * 23 22 21 47 47 H 1.07997 * 124.97142 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2261 1.1881 -0.0872 5 6 1.4601 2.3855 0.1120 6 7 0.3240 2.4320 0.7748 7 14 2.1446 3.9337 -0.6779 8 1 1.5341 4.1166 -2.0192 9 1 1.8264 5.1068 0.1750 10 1 3.6178 3.8083 -0.8176 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 8 1.2062 -1.9926 2.0823 14 6 1.3324 -2.4149 3.4416 15 6 -0.0565 -2.6890 4.0217 16 7 -0.6645 -3.8215 3.3189 17 6 -1.4785 -3.5900 2.1231 18 6 -0.4747 -5.0765 3.7724 19 8 0.1280 -5.2627 4.8118 20 6 -0.9986 -6.2243 3.0077 21 6 -2.2815 -6.1923 2.4632 22 7 -2.7549 -7.2154 1.7781 23 6 -2.0572 -8.3138 1.5692 24 6 -0.7637 -8.4407 2.0740 25 7 0.1814 -9.4137 2.0321 26 6 1.2399 -9.0194 2.6782 27 7 1.0412 -7.7689 3.1817 28 1 1.6747 -7.2532 3.7046 29 6 -0.2163 -7.3734 2.8115 30 1 -0.3634 0.1090 1.0219 31 1 -0.3633 0.8304 -0.6053 32 1 -0.3633 -0.9395 -0.4165 33 1 -0.1577 3.2703 0.8534 34 1 3.1500 -1.1385 -0.5133 35 1 1.6085 -2.0286 -0.5129 36 1 2.9643 -0.9121 1.9820 37 1 3.0733 -2.6057 1.4449 38 1 1.8208 -1.6317 4.0215 39 1 1.9301 -3.3254 3.4851 40 1 -0.6829 -1.8057 3.8975 41 1 0.0327 -2.9250 5.0821 42 1 -2.5145 -3.4202 2.4162 43 1 -1.1031 -2.7155 1.5918 44 1 -1.4236 -4.4623 1.4717 45 1 -2.8975 -5.3164 2.6044 46 1 -2.4916 -9.1235 1.0015 47 1 2.1421 -9.6001 2.8012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689244574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:44 Heat of formation + Delta-G solvation = 46.539296 kcal Electronic energy + Delta-G solvation = -30871.092846 eV Core-core repulsion = 26670.723817 eV Total energy + Delta-G solvation = -4200.369028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.80870 -40.20715 -38.62787 -37.62855 -35.83076 -35.08581 -33.71779 -31.97291 -31.46073 -30.61812 -29.60260 -28.07015 -26.79388 -25.79402 -24.97173 -23.49172 -23.19836 -22.99805 -22.01861 -20.39479 -19.88817 -18.78581 -18.11787 -17.35453 -16.81069 -16.48377 -16.28250 -15.88606 -15.55295 -15.48936 -15.39051 -15.01315 -14.62718 -14.35954 -13.96213 -13.90835 -13.44537 -13.36441 -13.22424 -13.09628 -12.80303 -12.36712 -12.29254 -12.02915 -11.59459 -11.51901 -11.26694 -11.06077 -10.95538 -10.83443 -10.73690 -10.56770 -10.54917 -10.15895 -10.01220 -9.80244 -9.75349 -9.46472 -9.07979 -8.81100 -8.69609 -8.35861 -6.89695 -5.78910 -3.01176 0.11102 1.00822 2.11065 2.40691 2.54756 2.83622 3.40114 3.48459 3.48823 3.49138 3.69088 3.96038 4.13199 4.15028 4.38099 4.53785 4.58343 4.68778 4.88119 5.07411 5.16587 5.24853 5.29563 5.34156 5.44528 5.48018 5.50397 5.60369 5.65368 5.79945 5.81855 5.90100 6.00984 6.04987 6.10172 6.15910 6.35950 6.47134 6.69111 6.76663 6.81610 7.16253 7.21650 7.47690 7.58616 7.69342 7.75431 7.86092 7.86768 8.32527 9.22377 9.90763 10.36859 11.29060 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002399 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.368096 B =11667.689421 C =11747.342977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.073 0.927 5 C 0.003 3.997 6 N -0.891 5.891 7 Si 0.887 3.113 8 H -0.289 1.289 9 H -0.294 1.294 10 H -0.281 1.281 11 C 0.155 3.845 12 C 0.042 3.958 13 O -0.367 6.367 14 C 0.049 3.951 15 C 0.119 3.881 16 N -0.590 5.590 17 C 0.067 3.933 18 C 0.562 3.438 19 O -0.548 6.548 20 C -0.170 4.170 21 C 0.136 3.864 22 N -0.486 5.486 23 C 0.194 3.806 24 C -0.015 4.015 25 N -0.477 5.477 26 C 0.267 3.733 27 N -0.585 5.585 28 H 0.433 0.567 29 C 0.123 3.877 30 H 0.024 0.976 31 H 0.044 0.956 32 H -0.002 1.002 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.173 0.827 46 H 0.171 0.829 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -21.443 5.380 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.091 0.909 5 C -0.195 4.195 6 N -0.536 5.536 7 Si 0.716 3.284 8 H -0.216 1.216 9 H -0.221 1.221 10 H -0.206 1.206 11 C 0.027 3.973 12 C -0.037 4.037 13 O -0.286 6.286 14 C -0.030 4.030 15 C -0.003 4.003 16 N -0.321 5.321 17 C -0.076 4.076 18 C 0.350 3.650 19 O -0.427 6.427 20 C -0.179 4.179 21 C -0.016 4.016 22 N -0.196 5.196 23 C 0.029 3.971 24 C -0.136 4.136 25 N -0.197 5.197 26 C -0.021 4.021 27 N -0.195 5.195 28 H 0.273 0.727 29 C 0.002 3.998 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.190 0.810 46 H 0.188 0.812 47 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.714 -22.015 5.093 22.759 hybrid contribution 2.102 1.908 0.903 2.979 sum -0.612 -20.107 5.996 20.991 Atomic orbital electron populations 1.20748 0.82139 0.95266 0.99232 1.44038 1.02214 1.00358 1.85382 1.19201 0.91516 0.83447 1.44661 0.90945 1.24657 0.97450 0.97289 1.00131 1.70279 1.18259 1.25588 1.39473 0.86495 0.78464 0.83479 0.79913 1.21629 1.22131 1.20633 1.20831 0.96523 0.88602 0.91370 1.23523 0.85264 0.96771 0.98186 1.87933 1.30315 1.87279 1.23061 1.22760 0.96571 0.97945 0.85680 1.21640 0.93797 0.88428 0.96474 1.47670 1.50238 1.05554 1.28650 1.22239 0.94350 1.04308 0.86676 1.18054 0.79689 0.82739 0.84551 1.90767 1.43200 1.85329 1.23382 1.19836 0.96889 0.94135 1.07033 1.23046 0.91159 0.96881 0.90514 1.67754 1.35568 1.00333 1.15930 1.22340 0.87021 0.94898 0.92875 1.20157 0.97534 0.91694 1.04189 1.70489 1.00040 1.27860 1.21276 1.25646 0.99496 0.83588 0.93337 1.43122 1.13712 1.16864 1.45778 0.72659 1.18644 0.86945 0.95704 0.98469 0.95773 0.93726 0.98390 0.93869 0.92234 0.93752 0.93467 0.95984 0.92593 0.94482 0.88680 0.88581 0.92071 0.88497 0.90960 0.81018 0.81209 0.75932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.15 8.72 59.85 0.52 4.67 16 2 N -0.60 -14.73 2.90 -181.12 -0.52 -15.26 16 3 C -0.26 -7.04 9.67 -15.06 -0.15 -7.18 16 4 H 0.07 1.92 7.98 -52.49 -0.42 1.50 16 5 C 0.00 0.09 4.82 -17.43 -0.08 0.01 16 6 N -0.89 -25.65 10.85 55.49 0.60 -25.05 16 7 Si 0.89 21.57 29.65 -169.99 -5.04 16.53 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.16 3.09 6.11 -4.04 -0.02 3.07 16 12 C 0.04 0.77 6.28 37.16 0.23 1.00 16 13 O -0.37 -6.57 8.70 -35.23 -0.31 -6.87 16 14 C 0.05 0.72 6.28 37.15 0.23 0.96 16 15 C 0.12 1.55 5.86 -4.05 -0.02 1.53 16 16 N -0.59 -7.38 2.84 -182.82 -0.52 -7.89 16 17 C 0.07 0.74 8.80 59.84 0.53 1.26 16 18 C 0.56 7.40 7.32 -12.47 -0.09 7.31 16 19 O -0.55 -8.39 16.54 5.29 0.09 -8.30 16 20 C -0.17 -2.02 5.10 -104.86 -0.53 -2.56 16 21 C 0.14 1.43 8.70 -17.08 -0.15 1.29 16 22 N -0.49 -5.28 10.30 -12.64 -0.13 -5.41 16 23 C 0.19 1.97 11.25 -17.12 -0.19 1.78 16 24 C -0.02 -0.17 7.27 -84.73 -0.62 -0.79 16 25 N -0.48 -4.98 11.28 -12.01 -0.14 -5.11 16 26 C 0.27 1.97 12.97 -89.56 -1.16 0.81 16 27 N -0.58 -5.23 6.19 -11.51 -0.07 -5.30 16 28 H 0.43 3.32 8.96 -40.82 -0.37 2.95 16 29 C 0.12 1.42 7.03 -83.81 -0.59 0.84 16 30 H 0.02 0.63 7.76 -51.93 -0.40 0.22 16 31 H 0.04 1.18 6.68 -51.93 -0.35 0.83 16 32 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 35 H 0.04 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 41 H 0.10 1.20 7.36 -51.93 -0.38 0.81 16 42 H 0.06 0.54 7.36 -51.93 -0.38 0.15 16 43 H 0.10 1.30 7.09 -51.93 -0.37 0.93 16 44 H 0.07 0.76 5.55 -51.93 -0.29 0.47 16 45 H 0.17 1.47 5.97 -52.48 -0.31 1.16 16 46 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 47 H 0.22 0.50 8.06 -52.49 -0.42 0.08 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -34.67 390.24 -8.84 -43.51 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -6.59 Total: -0.70 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -2.10 Total: 13.98 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.78 Total: -64.03 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.22 Total: -15.18 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.53 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.67 -8.84 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689244574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.050 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds