Wall clock time and date at job start Wed Apr 1 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 119.99782 * 2 1 4 4 H 1.07998 * 120.00154 * 185.34773 * 3 2 1 5 5 C 1.38808 * 120.00170 * 5.34659 * 3 2 1 6 6 N 1.31618 * 120.00076 * 29.77791 * 5 3 2 7 7 Si 1.86805 * 120.00391 * 209.77579 * 5 3 2 8 8 H 1.48499 * 109.47057 * 94.99377 * 7 5 3 9 9 H 1.48490 * 109.47341 * 214.99840 * 7 5 3 10 10 H 1.48506 * 109.46796 * 334.99738 * 7 5 3 11 11 C 1.46496 * 120.00267 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47293 * 270.00037 * 11 2 1 13 13 O 1.42894 * 109.47290 * 64.99919 * 12 11 2 14 14 C 1.42899 * 114.00626 * 180.02562 * 13 12 11 15 15 C 1.52993 * 109.47671 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47462 * 64.99516 * 15 14 13 17 17 C 1.46495 * 120.00235 * 270.00717 * 16 15 14 18 18 C 1.34780 * 119.99661 * 89.99599 * 16 15 14 19 19 O 1.21586 * 120.00224 * 4.74045 * 18 16 15 20 20 C 1.47534 * 119.99833 * 184.72975 * 18 16 15 21 21 C 1.39408 * 120.75999 * 316.29628 * 20 18 16 22 22 N 1.31913 * 121.02134 * 179.97438 * 21 20 18 23 23 C 1.31793 * 122.59820 * 0.02811 * 22 21 20 24 24 C 1.39436 * 120.63458 * 359.97438 * 23 22 21 25 25 N 1.35708 * 134.43749 * 179.97438 * 24 23 22 26 26 C 1.30125 * 109.50474 * 180.02562 * 25 24 23 27 27 N 1.36263 * 110.05703 * 0.22932 * 26 25 24 28 28 H 0.96996 * 126.29497 * 179.73924 * 27 26 25 29 29 C 1.36920 * 107.40441 * 359.62869 * 27 26 25 30 30 H 1.09003 * 109.47200 * 276.08763 * 1 2 3 31 31 H 1.08997 * 109.47221 * 36.08962 * 1 2 3 32 32 H 1.09001 * 109.47029 * 156.09235 * 1 2 3 33 33 H 0.97001 * 120.00222 * 179.97438 * 6 5 3 34 34 H 1.09005 * 109.47217 * 150.00168 * 11 2 1 35 35 H 1.09004 * 109.47042 * 29.99968 * 11 2 1 36 36 H 1.09005 * 109.47164 * 305.00142 * 12 11 2 37 37 H 1.09003 * 109.47110 * 185.00026 * 12 11 2 38 38 H 1.09004 * 109.47233 * 59.99270 * 14 13 12 39 39 H 1.09001 * 109.46642 * 300.00003 * 14 13 12 40 40 H 1.09005 * 109.46875 * 304.99785 * 15 14 13 41 41 H 1.09002 * 109.47413 * 184.99870 * 15 14 13 42 42 H 1.09003 * 109.47112 * 271.51661 * 17 16 15 43 43 H 1.08995 * 109.47414 * 31.52010 * 17 16 15 44 44 H 1.09002 * 109.47550 * 151.52395 * 17 16 15 45 45 H 1.08005 * 119.49123 * 359.97312 * 21 20 18 46 46 H 1.08005 * 119.68198 * 179.97438 * 23 22 21 47 47 H 1.07997 * 124.97142 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.2261 1.1881 -0.0872 5 6 1.4601 2.3855 0.1120 6 7 0.3240 2.4320 0.7748 7 14 2.1446 3.9337 -0.6779 8 1 1.5341 4.1166 -2.0192 9 1 1.8264 5.1068 0.1750 10 1 3.6178 3.8083 -0.8176 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 8 1.2062 -1.9926 2.0823 14 6 1.3324 -2.4149 3.4416 15 6 -0.0565 -2.6890 4.0217 16 7 -0.6645 -3.8215 3.3189 17 6 -1.4785 -3.5900 2.1231 18 6 -0.4747 -5.0765 3.7724 19 8 0.1280 -5.2627 4.8118 20 6 -0.9986 -6.2243 3.0077 21 6 -2.2815 -6.1923 2.4632 22 7 -2.7549 -7.2154 1.7781 23 6 -2.0572 -8.3138 1.5692 24 6 -0.7637 -8.4407 2.0740 25 7 0.1814 -9.4137 2.0321 26 6 1.2399 -9.0194 2.6782 27 7 1.0412 -7.7689 3.1817 28 1 1.6747 -7.2532 3.7046 29 6 -0.2163 -7.3734 2.8115 30 1 -0.3634 0.1090 1.0219 31 1 -0.3633 0.8304 -0.6053 32 1 -0.3633 -0.9395 -0.4165 33 1 -0.1577 3.2703 0.8534 34 1 3.1500 -1.1385 -0.5133 35 1 1.6085 -2.0286 -0.5129 36 1 2.9643 -0.9121 1.9820 37 1 3.0733 -2.6057 1.4449 38 1 1.8208 -1.6317 4.0215 39 1 1.9301 -3.3254 3.4851 40 1 -0.6829 -1.8057 3.8975 41 1 0.0327 -2.9250 5.0821 42 1 -2.5145 -3.4202 2.4162 43 1 -1.1031 -2.7155 1.5918 44 1 -1.4236 -4.4623 1.4717 45 1 -2.8975 -5.3164 2.6044 46 1 -2.4916 -9.1235 1.0015 47 1 2.1421 -9.6001 2.8012 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689244574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:43 Heat of formation + Delta-G solvation = 23.515216 kcal Electronic energy + Delta-G solvation = -30872.091245 eV Core-core repulsion = 26670.723817 eV Total energy + Delta-G solvation = -4201.367427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.53236 -41.17633 -39.46143 -38.99523 -37.31041 -36.49796 -34.48954 -33.53856 -32.63191 -31.52731 -30.71753 -29.57838 -27.82061 -27.75701 -25.86381 -24.83812 -24.27360 -24.03443 -22.85092 -22.15541 -20.79263 -19.55359 -18.96831 -18.74254 -18.20469 -17.57298 -17.36476 -17.11576 -16.83889 -16.41175 -16.34092 -16.28711 -15.89513 -15.40035 -15.26431 -15.20751 -14.92571 -14.58511 -14.26133 -14.12478 -14.00993 -13.62522 -13.52847 -13.20871 -13.10379 -12.92570 -12.71192 -12.65519 -12.47092 -12.29720 -12.03567 -11.97687 -11.79784 -11.77976 -11.66663 -11.39489 -10.67073 -10.48829 -10.39691 -10.24628 -9.81025 -9.47904 -8.89706 -7.86745 -5.09939 -0.65840 0.21294 1.29724 1.46665 1.50882 1.57700 1.65573 1.79199 1.89961 2.54234 2.68616 2.84392 3.02143 3.16291 3.25735 3.44007 3.59127 3.73070 3.82630 4.02424 4.06364 4.11792 4.18081 4.24022 4.35383 4.45734 4.48452 4.54982 4.55734 4.59098 4.63935 4.76379 4.81880 4.89170 4.94557 5.02897 5.07990 5.13317 5.29854 5.35916 5.45859 5.65004 5.80390 6.12489 6.20044 6.28726 6.39467 6.53050 6.80474 6.87760 7.16658 7.93503 8.34983 9.20330 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018044 B = 0.002399 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.368096 B =11667.689421 C =11747.342977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.613 5.613 3 C -0.264 4.264 4 H 0.075 0.925 5 C -0.050 4.050 6 N -0.923 5.923 7 Si 0.949 3.051 8 H -0.291 1.291 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.150 3.850 12 C 0.051 3.949 13 O -0.382 6.382 14 C 0.051 3.949 15 C 0.123 3.877 16 N -0.590 5.590 17 C 0.070 3.930 18 C 0.565 3.435 19 O -0.574 6.574 20 C -0.186 4.186 21 C 0.138 3.862 22 N -0.497 5.497 23 C 0.193 3.807 24 C -0.029 4.029 25 N -0.506 5.506 26 C 0.285 3.715 27 N -0.584 5.584 28 H 0.438 0.562 29 C 0.103 3.897 30 H -0.001 1.001 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.188 0.812 46 H 0.193 0.807 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 -23.021 4.902 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.336 5.336 3 C -0.393 4.393 4 H 0.093 0.907 5 C -0.246 4.246 6 N -0.569 5.569 7 Si 0.778 3.222 8 H -0.218 1.218 9 H -0.227 1.227 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.028 4.028 13 O -0.301 6.301 14 C -0.027 4.027 15 C 0.001 3.999 16 N -0.320 5.320 17 C -0.072 4.072 18 C 0.354 3.646 19 O -0.455 6.455 20 C -0.195 4.195 21 C -0.014 4.014 22 N -0.207 5.207 23 C 0.028 3.972 24 C -0.149 4.149 25 N -0.226 5.226 26 C -0.002 4.002 27 N -0.195 5.195 28 H 0.279 0.721 29 C -0.018 4.018 30 H 0.018 0.982 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.205 0.795 46 H 0.210 0.790 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.844 -23.620 4.597 24.133 hybrid contribution 1.897 2.258 1.068 3.137 sum 0.054 -21.362 5.665 22.100 Atomic orbital electron populations 1.20433 0.82326 0.95427 0.97305 1.44266 1.02451 1.01401 1.85463 1.19517 0.91868 0.84573 1.43391 0.90675 1.25347 0.98248 1.00017 1.00958 1.70398 1.19698 1.25879 1.40971 0.85510 0.78293 0.79946 0.78406 1.21808 1.22740 1.19476 1.21037 0.96827 0.87044 0.92701 1.23254 0.85667 0.97293 0.96589 1.87914 1.30242 1.87452 1.24526 1.22841 0.97776 0.97860 0.84243 1.21555 0.92891 0.88702 0.96762 1.47707 1.50155 1.05277 1.28829 1.22271 0.95269 1.03485 0.86151 1.18221 0.79151 0.83028 0.84218 1.90742 1.44546 1.85697 1.24541 1.19793 0.97657 0.93966 1.08044 1.23288 0.90892 0.97335 0.89900 1.67821 1.35789 1.00688 1.16373 1.22751 0.86868 0.95191 0.92430 1.20405 0.98138 0.91950 1.04409 1.70506 1.00888 1.28186 1.23035 1.26659 0.99959 0.82811 0.90763 1.43255 1.13072 1.17426 1.45734 0.72071 1.18884 0.88056 0.95843 0.99037 0.98241 0.96637 0.95498 0.94418 0.91142 0.92115 0.95861 0.92890 0.92934 0.93978 0.88872 0.87922 0.89623 0.90731 0.90317 0.79507 0.78991 0.71195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.26 8.72 127.77 1.11 10.37 16 2 N -0.61 -29.93 2.90 -726.94 -2.11 -32.03 16 3 C -0.26 -14.24 9.67 84.03 0.81 -13.42 16 4 H 0.08 3.93 7.98 -2.91 -0.02 3.91 16 5 C -0.05 -2.78 4.82 84.86 0.41 -2.37 16 6 N -0.92 -54.06 10.85 21.65 0.23 -53.82 16 7 Si 0.95 44.66 29.65 68.60 2.03 46.70 16 8 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 9 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 C 0.15 5.76 6.11 86.38 0.53 6.29 16 12 C 0.05 1.80 6.28 71.98 0.45 2.25 16 13 O -0.38 -13.39 8.70 -148.98 -1.30 -14.68 16 14 C 0.05 1.48 6.28 71.98 0.45 1.93 16 15 C 0.12 3.17 5.86 86.38 0.51 3.67 16 16 N -0.59 -14.26 2.84 -850.57 -2.41 -16.68 16 17 C 0.07 1.48 8.80 127.77 1.12 2.61 16 18 C 0.57 14.47 7.32 86.69 0.63 15.10 16 19 O -0.57 -17.31 16.54 -3.99 -0.07 -17.38 16 20 C -0.19 -4.26 5.10 -20.02 -0.10 -4.36 16 21 C 0.14 2.77 8.70 84.96 0.74 3.51 16 22 N -0.50 -10.24 10.30 -193.92 -2.00 -12.24 16 23 C 0.19 3.69 11.25 84.99 0.96 4.65 16 24 C -0.03 -0.61 7.27 39.46 0.29 -0.33 16 25 N -0.51 -9.68 11.28 -191.90 -2.16 -11.85 16 26 C 0.29 3.51 12.97 179.98 2.34 5.85 16 27 N -0.58 -9.54 6.19 -190.32 -1.18 -10.72 16 28 H 0.44 6.10 8.96 -92.71 -0.83 5.26 16 29 C 0.10 2.28 7.03 39.50 0.28 2.56 16 30 H 0.00 -0.04 7.76 -2.39 -0.02 -0.06 16 31 H 0.01 0.81 6.68 -2.39 -0.02 0.80 16 32 H 0.03 1.12 7.83 -2.39 -0.02 1.10 16 33 H 0.25 14.08 8.31 -92.71 -0.77 13.30 16 34 H 0.07 2.53 8.03 -2.38 -0.02 2.51 16 35 H 0.06 2.13 7.85 -2.38 -0.02 2.11 16 36 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 2.43 8.07 -2.38 -0.02 2.41 16 41 H 0.10 2.51 7.36 -2.39 -0.02 2.49 16 42 H 0.09 1.37 7.36 -2.39 -0.02 1.35 16 43 H 0.07 1.95 7.09 -2.39 -0.02 1.93 16 44 H 0.08 1.56 5.55 -2.39 -0.01 1.55 16 45 H 0.19 2.95 5.97 -2.91 -0.02 2.93 16 46 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 47 H 0.27 0.16 8.06 -2.91 -0.02 0.13 16 Total: -1.00 -74.65 390.24 1.75 -72.90 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.18 Total: 11.51 kcal Atomic # 6 Polarization: 27.77 SS G_CDS: 10.53 Total: 38.30 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -9.62 Total: -137.34 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.36 Total: -32.06 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.65 1.75 -72.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689244574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.414 kcal (2) G-P(sol) polarization free energy of solvation -74.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds