Wall clock time and date at job start Wed Apr 1 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00730 * 2 1 4 4 H 1.08000 * 120.00388 * 203.66790 * 3 2 1 5 5 C 1.38811 * 119.99780 * 23.65985 * 3 2 1 6 6 N 1.31619 * 119.99906 * 10.59857 * 5 3 2 7 7 Si 1.86800 * 120.00107 * 190.59843 * 5 3 2 8 8 H 1.48503 * 109.47314 * 60.00383 * 7 5 3 9 9 H 1.48503 * 109.46977 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46853 * 299.99755 * 7 5 3 11 11 C 1.46504 * 119.99823 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47107 * 270.00287 * 11 2 1 13 13 O 1.42898 * 109.47569 * 64.99429 * 12 11 2 14 14 C 1.42901 * 114.00147 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47049 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47304 * 64.99900 * 15 14 13 17 17 C 1.46502 * 119.99903 * 270.00108 * 16 15 14 18 18 C 1.34780 * 120.00062 * 89.99862 * 16 15 14 19 19 O 1.21567 * 119.99553 * 4.91854 * 18 16 15 20 20 C 1.47714 * 119.99923 * 184.91152 * 18 16 15 21 21 C 1.40263 * 119.87925 * 140.40882 * 20 18 16 22 22 C 1.36161 * 120.55748 * 179.97438 * 21 20 18 23 23 C 1.39908 * 119.97878 * 0.02562 * 22 21 20 24 24 N 1.34751 * 134.59536 * 179.97438 * 23 22 21 25 25 N 1.28642 * 109.29344 * 179.97438 * 24 23 22 26 26 N 1.28812 * 111.79242 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.94058 * 179.97438 * 26 25 24 28 28 C 1.37363 * 108.11513 * 359.78168 * 26 25 24 29 29 C 1.38626 * 134.88625 * 179.55746 * 28 26 25 30 30 H 1.09005 * 109.46623 * 275.02556 * 1 2 3 31 31 H 1.09001 * 109.46861 * 35.01937 * 1 2 3 32 32 H 1.08990 * 109.47364 * 155.02153 * 1 2 3 33 33 H 0.97008 * 120.00034 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.47531 * 149.99893 * 11 2 1 35 35 H 1.08997 * 109.47087 * 29.99262 * 11 2 1 36 36 H 1.09005 * 109.46499 * 304.99779 * 12 11 2 37 37 H 1.08992 * 109.47195 * 185.00059 * 12 11 2 38 38 H 1.08994 * 109.47145 * 60.00255 * 14 13 12 39 39 H 1.09002 * 109.46701 * 300.00198 * 14 13 12 40 40 H 1.09004 * 109.47189 * 304.99868 * 15 14 13 41 41 H 1.08994 * 109.47220 * 185.00136 * 15 14 13 42 42 H 1.09001 * 109.47446 * 265.48705 * 17 16 15 43 43 H 1.08999 * 109.47326 * 25.48951 * 17 16 15 44 44 H 1.09001 * 109.47115 * 145.49000 * 17 16 15 45 45 H 1.07994 * 119.72066 * 0.02562 * 21 20 18 46 46 H 1.07999 * 120.00863 * 180.02562 * 22 21 20 47 47 H 1.07996 * 120.23978 * 0.63569 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1617 1.2251 -0.3755 5 6 1.5434 2.3375 0.4824 6 7 0.3992 2.2577 1.1280 7 14 2.3512 4.0005 0.2155 8 1 2.4940 4.2534 -1.2409 9 1 1.5097 5.0627 0.8227 10 1 3.6924 4.0072 0.8530 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7112 1.4418 13 8 1.2060 -1.9944 2.0806 14 6 1.3323 -2.4179 3.4396 15 6 -0.0567 -2.6924 4.0194 16 7 -0.6648 -3.8242 3.3157 17 6 -1.4788 -3.5916 2.1201 18 6 -0.4753 -5.0796 3.7681 19 8 0.1244 -5.2665 4.8090 20 6 -0.9964 -6.2283 2.9994 21 6 -0.2325 -7.3994 2.8887 22 6 -0.6997 -8.4666 2.1839 23 6 -1.9514 -8.4002 1.5624 24 7 -2.6825 -9.2496 0.8143 25 7 -3.7892 -8.6821 0.4859 26 7 -3.8731 -7.4873 0.9601 27 1 -4.6173 -6.8773 0.8379 28 6 -2.7274 -7.2291 1.6724 29 6 -2.2434 -6.1445 2.3873 30 1 -0.3633 0.0900 1.0238 31 1 -0.3633 0.8416 -0.5897 32 1 -0.3633 -0.9314 -0.4339 33 1 -0.0245 3.0625 1.4655 34 1 3.1499 -1.1383 -0.5143 35 1 1.6084 -2.0282 -0.5146 36 1 2.9642 -0.9140 1.9811 37 1 3.0731 -2.6071 1.4427 38 1 1.8206 -1.6353 4.0201 39 1 1.9299 -3.3285 3.4822 40 1 -0.6830 -1.8088 3.8960 41 1 0.0325 -2.9292 5.0796 42 1 -2.5297 -3.5284 2.4026 43 1 -1.1728 -2.6579 1.6482 44 1 -1.3398 -4.4153 1.4199 45 1 0.7341 -7.4553 3.3672 46 1 -0.1042 -9.3641 2.1048 47 1 -2.8319 -5.2430 2.4726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689251589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:47 Heat of formation + Delta-G solvation = 75.096353 kcal Electronic energy + Delta-G solvation = -30590.890169 eV Core-core repulsion = 26391.759468 eV Total energy + Delta-G solvation = -4199.130701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.58897 -40.42931 -37.96417 -37.37448 -35.82835 -35.05421 -34.24049 -31.82031 -31.20999 -31.05976 -29.58285 -28.01799 -26.85712 -25.75992 -24.98984 -23.95511 -23.02249 -22.85459 -22.55363 -20.36196 -20.07511 -18.82802 -18.19605 -17.27572 -16.76864 -16.63645 -16.37230 -16.00628 -15.61466 -15.35766 -15.12013 -14.82195 -14.56131 -14.23474 -13.88408 -13.43473 -13.29577 -13.09443 -12.99589 -12.66032 -12.57871 -12.41289 -12.26378 -12.18496 -11.99213 -11.61158 -11.47735 -11.37607 -11.13597 -10.97661 -10.85106 -10.77729 -10.54588 -10.12970 -10.10348 -9.95660 -9.82091 -9.39203 -8.96543 -8.82156 -8.74002 -8.52268 -6.69402 -5.69439 -3.16155 -0.03544 0.79912 1.76320 2.07758 2.51606 2.82713 3.28192 3.37778 3.43295 3.44004 3.57426 4.11843 4.17815 4.24527 4.50027 4.51377 4.57569 4.69943 4.95380 5.08485 5.18521 5.31876 5.35827 5.42143 5.42641 5.51323 5.56227 5.63471 5.72336 5.73392 5.84884 5.89391 5.91851 6.09898 6.14673 6.17987 6.24530 6.35714 6.41976 6.55139 6.76074 6.86980 7.20789 7.44335 7.78785 7.83278 7.85441 7.89667 7.93910 8.43105 9.27542 9.90723 10.41342 11.34488 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002366 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.898769 B =11832.447567 C =12478.877559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.367 6.367 14 C 0.048 3.952 15 C 0.119 3.881 16 N -0.593 5.593 17 C 0.070 3.930 18 C 0.558 3.442 19 O -0.534 6.534 20 C -0.086 4.086 21 C -0.069 4.069 22 C -0.054 4.054 23 C 0.025 3.975 24 N -0.252 5.252 25 N -0.009 5.009 26 N -0.413 5.413 27 H 0.454 0.546 28 C 0.020 3.980 29 C -0.071 4.071 30 H 0.033 0.967 31 H 0.034 0.966 32 H -0.008 1.008 33 H 0.251 0.749 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.047 0.953 37 H 0.022 0.978 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -18.191 3.474 19.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.083 0.917 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.286 6.286 14 C -0.031 4.031 15 C -0.003 4.003 16 N -0.325 5.325 17 C -0.073 4.073 18 C 0.345 3.655 19 O -0.412 6.412 20 C -0.093 4.093 21 C -0.091 4.091 22 C -0.076 4.076 23 C -0.100 4.100 24 N -0.128 5.128 25 N 0.009 4.991 26 N -0.142 5.142 27 H 0.302 0.698 28 C -0.100 4.100 29 C -0.094 4.094 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.010 0.990 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.164 0.836 46 H 0.164 0.836 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.696 -19.234 3.148 20.954 hybrid contribution 0.615 2.279 0.577 2.429 sum -7.081 -16.956 3.724 18.748 Atomic orbital electron populations 1.20682 0.82349 0.94507 0.99345 1.43849 1.02060 1.00218 1.85726 1.19151 0.98675 0.85849 1.34904 0.91707 1.25032 0.97777 0.98399 0.98306 1.70061 1.18185 1.27086 1.39588 0.86380 0.78551 0.84032 0.77789 1.21145 1.21686 1.21069 1.20882 0.96368 0.88750 0.91425 1.23450 0.85250 0.96760 0.98014 1.87915 1.30333 1.87267 1.23084 1.22761 0.96514 0.98111 0.85674 1.21643 0.93880 0.88253 0.96486 1.47675 1.50400 1.05717 1.28672 1.22240 0.93552 1.04730 0.86755 1.18153 0.79802 0.82654 0.84870 1.90802 1.42206 1.85040 1.23113 1.19792 0.94784 0.95541 0.99157 1.20794 1.00370 0.90674 0.97245 1.19958 0.92198 0.99639 0.95834 1.20100 0.97419 0.91099 1.01400 1.75389 0.98969 1.24550 1.13914 1.77986 1.15286 0.91840 1.14031 1.44879 1.17021 1.13563 1.38715 0.69849 1.19629 0.89560 0.98812 1.02037 1.20561 0.96045 0.96734 0.96034 0.94838 0.94745 0.98951 0.93899 0.92489 0.93973 0.93437 0.95943 0.92682 0.94097 0.88856 0.88578 0.92761 0.88450 0.90996 0.83573 0.83619 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.23 8.61 59.85 0.52 4.74 16 2 N -0.60 -14.67 2.89 -181.12 -0.52 -15.19 16 3 C -0.26 -6.91 9.66 -15.06 -0.15 -7.05 16 4 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16 5 C 0.00 0.09 5.15 -17.43 -0.09 0.00 16 6 N -0.90 -25.75 10.62 55.49 0.59 -25.16 16 7 Si 0.90 21.55 29.57 -169.99 -5.03 16.53 16 8 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.15 3.09 6.11 -4.04 -0.02 3.06 16 12 C 0.04 0.83 6.28 37.16 0.23 1.06 16 13 O -0.37 -6.64 8.81 -35.23 -0.31 -6.95 16 14 C 0.05 0.72 6.28 37.16 0.23 0.96 16 15 C 0.12 1.56 5.83 -4.04 -0.02 1.53 16 16 N -0.59 -7.13 2.84 -182.74 -0.52 -7.65 16 17 C 0.07 0.70 8.66 59.85 0.52 1.22 16 18 C 0.56 7.00 7.33 -12.39 -0.09 6.91 16 19 O -0.53 -8.26 16.46 5.31 0.09 -8.17 16 20 C -0.09 -0.88 5.24 -104.92 -0.55 -1.43 16 21 C -0.07 -0.65 9.54 -39.57 -0.38 -1.03 16 22 C -0.05 -0.48 10.03 -39.70 -0.40 -0.88 16 23 C 0.03 0.26 7.36 -84.95 -0.63 -0.36 16 24 N -0.25 -2.96 12.42 32.09 0.40 -2.57 16 25 N -0.01 -0.10 13.28 60.35 0.80 0.71 16 26 N -0.41 -3.04 7.08 32.31 0.23 -2.81 16 27 H 0.45 1.47 8.96 -190.23 -1.71 -0.23 16 28 C 0.02 0.17 7.40 -84.23 -0.62 -0.45 16 29 C -0.07 -0.60 7.57 -39.09 -0.30 -0.89 16 30 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 31 H 0.03 0.89 7.31 -51.93 -0.38 0.51 16 32 H -0.01 -0.17 7.83 -51.93 -0.41 -0.58 16 33 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 35 H 0.04 0.79 7.86 -51.93 -0.41 0.38 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.22 8.07 -51.93 -0.42 0.80 16 41 H 0.10 1.20 7.36 -51.93 -0.38 0.82 16 42 H 0.05 0.40 6.88 -51.93 -0.36 0.05 16 43 H 0.10 1.23 7.21 -51.93 -0.37 0.85 16 44 H 0.07 0.66 5.83 -51.93 -0.30 0.36 16 45 H 0.15 1.25 8.05 -52.49 -0.42 0.83 16 46 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 47 H 0.15 0.92 5.31 -52.49 -0.28 0.65 16 LS Contribution 389.17 15.07 5.86 5.86 Total: -1.00 -34.02 389.17 -8.05 -42.07 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -7.90 Total: -4.07 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.74 Total: 7.40 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.98 Total: -52.68 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.22 Total: -15.12 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.02 -8.05 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689251589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.167 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds