Wall clock time and date at job start Wed Apr 1 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 120.00730 * 2 1 4 4 H 1.08000 * 120.00388 * 203.66790 * 3 2 1 5 5 C 1.38811 * 119.99780 * 23.65985 * 3 2 1 6 6 N 1.31619 * 119.99906 * 10.59857 * 5 3 2 7 7 Si 1.86800 * 120.00107 * 190.59843 * 5 3 2 8 8 H 1.48503 * 109.47314 * 60.00383 * 7 5 3 9 9 H 1.48503 * 109.46977 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46853 * 299.99755 * 7 5 3 11 11 C 1.46504 * 119.99823 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47107 * 270.00287 * 11 2 1 13 13 O 1.42898 * 109.47569 * 64.99429 * 12 11 2 14 14 C 1.42901 * 114.00147 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47049 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.47304 * 64.99900 * 15 14 13 17 17 C 1.46502 * 119.99903 * 270.00108 * 16 15 14 18 18 C 1.34780 * 120.00062 * 89.99862 * 16 15 14 19 19 O 1.21567 * 119.99553 * 4.91854 * 18 16 15 20 20 C 1.47714 * 119.99923 * 184.91152 * 18 16 15 21 21 C 1.40263 * 119.87925 * 140.40882 * 20 18 16 22 22 C 1.36161 * 120.55748 * 179.97438 * 21 20 18 23 23 C 1.39908 * 119.97878 * 0.02562 * 22 21 20 24 24 N 1.34751 * 134.59536 * 179.97438 * 23 22 21 25 25 N 1.28642 * 109.29344 * 179.97438 * 24 23 22 26 26 N 1.28812 * 111.79242 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.94058 * 179.97438 * 26 25 24 28 28 C 1.37363 * 108.11513 * 359.78168 * 26 25 24 29 29 C 1.38626 * 134.88625 * 179.55746 * 28 26 25 30 30 H 1.09005 * 109.46623 * 275.02556 * 1 2 3 31 31 H 1.09001 * 109.46861 * 35.01937 * 1 2 3 32 32 H 1.08990 * 109.47364 * 155.02153 * 1 2 3 33 33 H 0.97008 * 120.00034 * 179.97438 * 6 5 3 34 34 H 1.08994 * 109.47531 * 149.99893 * 11 2 1 35 35 H 1.08997 * 109.47087 * 29.99262 * 11 2 1 36 36 H 1.09005 * 109.46499 * 304.99779 * 12 11 2 37 37 H 1.08992 * 109.47195 * 185.00059 * 12 11 2 38 38 H 1.08994 * 109.47145 * 60.00255 * 14 13 12 39 39 H 1.09002 * 109.46701 * 300.00198 * 14 13 12 40 40 H 1.09004 * 109.47189 * 304.99868 * 15 14 13 41 41 H 1.08994 * 109.47220 * 185.00136 * 15 14 13 42 42 H 1.09001 * 109.47446 * 265.48705 * 17 16 15 43 43 H 1.08999 * 109.47326 * 25.48951 * 17 16 15 44 44 H 1.09001 * 109.47115 * 145.49000 * 17 16 15 45 45 H 1.07994 * 119.72066 * 0.02562 * 21 20 18 46 46 H 1.07999 * 120.00863 * 180.02562 * 22 21 20 47 47 H 1.07996 * 120.23978 * 0.63569 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1617 1.2251 -0.3755 5 6 1.5434 2.3375 0.4824 6 7 0.3992 2.2577 1.1280 7 14 2.3512 4.0005 0.2155 8 1 2.4940 4.2534 -1.2409 9 1 1.5097 5.0627 0.8227 10 1 3.6924 4.0072 0.8530 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7112 1.4418 13 8 1.2060 -1.9944 2.0806 14 6 1.3323 -2.4179 3.4396 15 6 -0.0567 -2.6924 4.0194 16 7 -0.6648 -3.8242 3.3157 17 6 -1.4788 -3.5916 2.1201 18 6 -0.4753 -5.0796 3.7681 19 8 0.1244 -5.2665 4.8090 20 6 -0.9964 -6.2283 2.9994 21 6 -0.2325 -7.3994 2.8887 22 6 -0.6997 -8.4666 2.1839 23 6 -1.9514 -8.4002 1.5624 24 7 -2.6825 -9.2496 0.8143 25 7 -3.7892 -8.6821 0.4859 26 7 -3.8731 -7.4873 0.9601 27 1 -4.6173 -6.8773 0.8379 28 6 -2.7274 -7.2291 1.6724 29 6 -2.2434 -6.1445 2.3873 30 1 -0.3633 0.0900 1.0238 31 1 -0.3633 0.8416 -0.5897 32 1 -0.3633 -0.9314 -0.4339 33 1 -0.0245 3.0625 1.4655 34 1 3.1499 -1.1383 -0.5143 35 1 1.6084 -2.0282 -0.5146 36 1 2.9642 -0.9140 1.9811 37 1 3.0731 -2.6071 1.4427 38 1 1.8206 -1.6353 4.0201 39 1 1.9299 -3.3285 3.4822 40 1 -0.6830 -1.8088 3.8960 41 1 0.0325 -2.9292 5.0796 42 1 -2.5297 -3.5284 2.4026 43 1 -1.1728 -2.6579 1.6482 44 1 -1.3398 -4.4153 1.4199 45 1 0.7341 -7.4553 3.3672 46 1 -0.1042 -9.3641 2.1048 47 1 -2.8319 -5.2430 2.4726 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689251589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:46 Heat of formation + Delta-G solvation = 52.157281 kcal Electronic energy + Delta-G solvation = -30591.884882 eV Core-core repulsion = 26391.759468 eV Total energy + Delta-G solvation = -4200.125414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.30816 -41.36060 -39.09597 -38.44158 -37.23370 -36.48334 -34.98316 -33.47416 -32.37252 -31.77790 -30.75166 -29.50854 -27.77077 -27.76247 -25.84896 -24.84518 -24.67922 -23.63143 -23.48871 -22.11187 -20.98685 -19.53725 -19.01596 -18.73991 -18.13372 -17.43452 -17.36577 -17.24328 -16.94669 -16.63909 -16.30523 -15.95952 -15.59045 -15.34747 -15.19280 -15.10637 -14.72180 -14.13525 -14.01695 -13.85947 -13.60097 -13.34455 -13.29382 -13.16864 -12.97336 -12.95244 -12.82191 -12.65934 -12.58907 -12.46833 -12.32742 -12.19267 -12.00035 -11.87209 -11.77266 -11.67617 -11.09807 -10.58518 -10.36562 -10.14576 -9.72375 -9.50767 -8.68233 -7.75496 -5.23722 -0.76252 0.09230 1.00157 1.46873 1.48390 1.49785 1.55961 1.61662 1.93888 2.52662 2.54336 2.88541 2.92365 3.34341 3.37098 3.47641 3.79527 3.79937 3.90433 4.00072 4.12811 4.14670 4.25968 4.31797 4.42725 4.53665 4.55892 4.59180 4.64549 4.67436 4.73901 4.78573 4.86491 4.95021 5.01160 5.04978 5.07670 5.17423 5.19998 5.40526 5.43549 5.48275 5.69921 5.86106 5.90102 6.26892 6.39384 6.47525 6.98036 7.11900 7.23280 7.95933 8.40424 9.26442 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.002366 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.898769 B =11832.447567 C =12478.877559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.612 5.612 3 C -0.263 4.263 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.931 5.931 7 Si 0.963 3.037 8 H -0.280 1.280 9 H -0.296 1.296 10 H -0.279 1.279 11 C 0.150 3.850 12 C 0.053 3.947 13 O -0.379 6.379 14 C 0.049 3.951 15 C 0.125 3.875 16 N -0.593 5.593 17 C 0.069 3.931 18 C 0.560 3.440 19 O -0.569 6.569 20 C -0.101 4.101 21 C -0.071 4.071 22 C -0.054 4.054 23 C 0.009 3.991 24 N -0.283 5.283 25 N -0.019 5.019 26 N -0.389 5.389 27 H 0.472 0.528 28 C 0.017 3.983 29 C -0.053 4.053 30 H 0.009 0.991 31 H 0.004 0.996 32 H 0.023 0.977 33 H 0.245 0.755 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.053 0.947 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.151 0.849 46 H 0.164 0.836 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 -18.900 2.901 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.335 5.335 3 C -0.394 4.394 4 H 0.086 0.914 5 C -0.246 4.246 6 N -0.577 5.577 7 Si 0.792 3.208 8 H -0.206 1.206 9 H -0.222 1.222 10 H -0.205 1.205 11 C 0.024 3.976 12 C -0.026 4.026 13 O -0.299 6.299 14 C -0.029 4.029 15 C 0.002 3.998 16 N -0.324 5.324 17 C -0.073 4.073 18 C 0.349 3.651 19 O -0.449 6.449 20 C -0.108 4.108 21 C -0.092 4.092 22 C -0.076 4.076 23 C -0.117 4.117 24 N -0.159 5.159 25 N -0.001 5.001 26 N -0.121 5.121 27 H 0.323 0.677 28 C -0.103 4.103 29 C -0.075 4.075 30 H 0.028 0.972 31 H 0.023 0.977 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.168 0.832 46 H 0.181 0.819 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.023 -19.963 2.539 21.664 hybrid contribution 0.690 2.431 0.725 2.629 sum -7.332 -17.532 3.264 19.282 Atomic orbital electron populations 1.20374 0.82412 0.94697 0.97542 1.44071 1.02377 1.01210 1.85870 1.19478 0.98838 0.87034 1.34030 0.91420 1.25735 0.98566 1.01515 0.98748 1.70225 1.19409 1.27309 1.40805 0.85417 0.77659 0.80089 0.77676 1.20622 1.22229 1.20455 1.21053 0.96671 0.87288 0.92606 1.23198 0.85703 0.97111 0.96583 1.87895 1.30124 1.87398 1.24441 1.22844 0.97954 0.97800 0.84288 1.21516 0.92770 0.88752 0.96744 1.47730 1.50311 1.05331 1.28984 1.22358 0.94868 1.03852 0.86177 1.18424 0.79139 0.83067 0.84476 1.90781 1.43933 1.85513 1.24694 1.19673 0.95889 0.95042 1.00221 1.20868 1.00581 0.90544 0.97228 1.20116 0.91991 1.00170 0.95365 1.20426 0.98134 0.91584 1.01519 1.75367 0.99712 1.25575 1.15202 1.77922 1.15096 0.92746 1.14310 1.44897 1.17051 1.13006 1.37171 0.67666 1.19650 0.89816 0.98541 1.02310 1.20670 0.95268 0.97166 0.94431 0.97219 0.97675 0.95869 0.94565 0.91546 0.92099 0.96210 0.92947 0.93408 0.93812 0.89030 0.88076 0.89615 0.90879 0.89834 0.83175 0.81871 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.31 8.61 127.77 1.10 10.41 16 2 N -0.61 -29.76 2.89 -726.93 -2.10 -31.86 16 3 C -0.26 -14.13 9.66 84.03 0.81 -13.32 16 4 H 0.07 3.52 7.84 -2.91 -0.02 3.49 16 5 C -0.05 -2.76 5.15 84.86 0.44 -2.33 16 6 N -0.93 -53.75 10.62 21.65 0.23 -53.52 16 7 Si 0.96 44.41 29.57 68.60 2.03 46.44 16 8 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 9 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 C 0.15 5.78 6.11 86.38 0.53 6.31 16 12 C 0.05 1.91 6.28 71.98 0.45 2.37 16 13 O -0.38 -13.39 8.81 -148.98 -1.31 -14.70 16 14 C 0.05 1.47 6.28 71.98 0.45 1.92 16 15 C 0.12 3.18 5.83 86.38 0.50 3.68 16 16 N -0.59 -13.35 2.84 -850.34 -2.41 -15.76 16 17 C 0.07 1.24 8.66 127.77 1.11 2.34 16 18 C 0.56 13.30 7.33 86.75 0.64 13.94 16 19 O -0.57 -17.25 16.46 -3.93 -0.06 -17.32 16 20 C -0.10 -1.89 5.24 -20.06 -0.11 -2.00 16 21 C -0.07 -1.23 9.54 22.28 0.21 -1.02 16 22 C -0.05 -0.89 10.03 22.19 0.22 -0.67 16 23 C 0.01 0.18 7.36 39.75 0.29 0.47 16 24 N -0.28 -6.35 12.42 -52.38 -0.65 -7.00 16 25 N -0.02 -0.35 13.28 37.02 0.49 0.14 16 26 N -0.39 -4.81 7.08 -51.69 -0.37 -5.18 16 27 H 0.47 1.71 8.96 -219.82 -1.97 -0.26 16 28 C 0.02 0.27 7.40 39.02 0.29 0.56 16 29 C -0.05 -0.75 7.57 22.58 0.17 -0.58 16 30 H 0.01 0.50 7.34 -2.38 -0.02 0.48 16 31 H 0.00 0.24 7.31 -2.39 -0.02 0.22 16 32 H 0.02 0.94 7.83 -2.39 -0.02 0.92 16 33 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 34 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 35 H 0.06 2.11 7.86 -2.39 -0.02 2.09 16 36 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 2.36 8.07 -2.38 -0.02 2.34 16 41 H 0.10 2.48 7.36 -2.39 -0.02 2.46 16 42 H 0.09 0.99 6.88 -2.39 -0.02 0.97 16 43 H 0.07 1.73 7.21 -2.39 -0.02 1.71 16 44 H 0.08 1.30 5.83 -2.39 -0.01 1.28 16 45 H 0.15 2.43 8.05 -2.91 -0.02 2.40 16 46 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.17 1.50 5.31 -2.91 -0.02 1.49 16 Total: -1.00 -73.25 389.17 2.00 -71.25 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -0.96 Total: 5.42 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 7.11 Total: 22.09 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -4.81 Total: -113.18 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.38 Total: -32.02 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.25 2.00 -71.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689251589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.409 kcal (2) G-P(sol) polarization free energy of solvation -73.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds