Wall clock time and date at job start Wed Apr 1 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99899 * 2 1 4 4 C 1.53003 * 109.46696 * 66.04962 * 3 2 1 5 5 C 1.53001 * 109.47182 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 C 1.53003 * 112.85218 * 48.80574 * 9 7 6 11 11 F 1.39898 * 109.46960 * 69.66238 * 10 9 7 12 12 F 1.39896 * 109.46953 * 189.66708 * 10 9 7 13 13 C 1.53777 * 113.61568 * 277.49596 * 9 7 6 14 14 C 1.53775 * 87.08539 * 220.02224 * 13 9 7 15 15 C 1.53781 * 87.08192 * 25.43251 * 14 13 9 16 16 C 1.46900 * 111.00066 * 236.05354 * 2 1 3 17 17 C 1.50704 * 109.46937 * 293.94969 * 16 2 1 18 18 O 1.21294 * 119.99816 * 359.97438 * 17 16 2 19 19 N 1.34780 * 119.99926 * 179.97438 * 17 16 2 20 20 C 1.37099 * 119.99569 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00345 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99465 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00534 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46697 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46893 * 119.99570 * 24 22 20 27 27 H 1.48489 * 109.47190 * 240.00128 * 24 22 20 28 28 H 1.08996 * 109.47585 * 59.99631 * 1 2 3 29 29 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46862 * 299.99016 * 1 2 3 31 31 H 1.08993 * 109.47243 * 306.05228 * 3 2 1 32 32 H 1.09001 * 109.47205 * 186.04719 * 3 2 1 33 33 H 1.09007 * 109.47291 * 60.00195 * 4 3 2 34 34 H 1.08993 * 109.47243 * 300.00104 * 4 3 2 35 35 H 1.09007 * 109.46593 * 60.00081 * 5 4 3 36 36 H 1.09006 * 109.47216 * 300.00539 * 5 4 3 37 37 H 0.97000 * 120.00740 * 359.72857 * 6 5 4 38 38 H 1.08999 * 109.46976 * 309.66600 * 10 9 7 39 39 H 1.09004 * 113.61546 * 334.57149 * 13 9 7 40 40 H 1.09003 * 113.61384 * 105.47433 * 13 9 7 41 41 H 1.09005 * 113.61565 * 270.88849 * 14 13 9 42 42 H 1.08999 * 113.61910 * 139.98310 * 14 13 9 43 43 H 1.09001 * 113.61337 * 220.02490 * 15 14 13 44 44 H 1.08993 * 113.61593 * 89.11741 * 15 14 13 45 45 H 1.08999 * 109.47476 * 53.94710 * 16 2 1 46 46 H 1.09003 * 109.47309 * 173.95251 * 16 2 1 47 47 H 0.96997 * 119.99781 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00341 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3184 5 6 2.1802 3.4856 1.3187 6 7 1.8312 4.1425 2.5808 7 6 2.2125 5.4155 2.8059 8 8 2.8489 6.0154 1.9656 9 6 1.8482 6.0933 4.1015 10 6 2.1743 5.2414 5.3300 11 9 3.5623 5.1570 5.4837 12 9 1.6140 5.8308 6.4682 13 6 0.4249 6.6752 4.1134 14 6 1.0098 7.8842 4.8623 15 6 2.3564 7.5412 4.2035 16 6 1.9954 -0.7658 -1.1377 17 6 1.6370 -2.2203 -0.9730 18 8 1.0055 -2.5833 -0.0031 19 7 2.0181 -3.1178 -1.9036 20 6 1.6924 -4.4411 -1.7534 21 1 1.1301 -4.7642 -0.8898 22 6 2.0857 -5.3664 -2.7125 23 7 2.7703 -4.9733 -3.7631 24 14 1.6414 -7.1693 -2.5084 25 1 0.8732 -7.3504 -1.2505 26 1 0.8141 -7.6086 -3.6607 27 1 2.8831 -7.9818 -2.4521 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.5610 1.9274 -0.8308 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5014 2.1493 34 1 0.5472 2.0843 1.4267 35 1 1.7461 4.0418 0.4878 36 1 3.2645 3.4582 1.2106 37 1 1.3219 3.6628 3.2527 38 1 1.7619 4.2411 5.1983 39 1 0.0443 6.9185 3.1213 40 1 -0.2799 6.0931 4.7071 41 1 1.0118 7.7673 5.9461 42 1 0.5965 8.8397 4.5394 43 1 3.2109 7.6581 4.8700 44 1 2.5040 8.0212 3.2361 45 1 1.5610 -0.3871 -2.0629 46 1 3.0797 -0.6609 -1.1757 47 1 2.5234 -2.8276 -2.6790 48 1 3.0446 -5.6191 -4.4327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689829730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:39 Heat of formation + Delta-G solvation = -149.263711 kcal Electronic energy + Delta-G solvation = -30146.144961 eV Core-core repulsion = 25486.596091 eV Total energy + Delta-G solvation = -4659.548870 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.58992 -47.53398 -40.88073 -38.75761 -38.18257 -36.93014 -35.38844 -33.88335 -31.95425 -31.24031 -29.41423 -27.87082 -26.57929 -26.28739 -25.04547 -24.46279 -22.84334 -21.56144 -20.87268 -19.82330 -19.18154 -18.67027 -17.84805 -17.81344 -17.49748 -16.55977 -16.42418 -16.14017 -15.87387 -15.32574 -15.19058 -14.89992 -14.66597 -14.47247 -14.33478 -14.22178 -13.84400 -13.69973 -13.49908 -13.39755 -13.37391 -13.01556 -12.67491 -12.38440 -12.31674 -12.17962 -11.96186 -11.78317 -11.71134 -11.49740 -11.29314 -11.28113 -11.05865 -10.95275 -10.83313 -10.79003 -10.35337 -10.24281 -10.20215 -9.51999 -9.49844 -8.47875 -7.99483 -7.88260 -6.42870 -3.83739 2.02117 2.58497 3.02371 3.15294 3.25967 3.32902 3.46607 3.62077 3.67955 3.88779 3.94132 4.14409 4.19487 4.22385 4.35303 4.53185 4.73679 4.74765 4.90362 4.97781 5.05893 5.08266 5.18207 5.23840 5.32896 5.34262 5.41975 5.43427 5.47170 5.53585 5.65581 5.70028 5.80059 5.86470 5.90786 5.95228 5.99637 6.05993 6.26840 6.51709 6.96813 7.22768 7.35329 7.54284 7.69453 8.05477 8.60648 9.17088 9.53427 10.05088 10.74915 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.001520 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.828373 B =18418.816252 C =18705.570591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.726 5.726 7 C 0.535 3.465 8 O -0.522 6.522 9 C -0.175 4.175 10 C 0.292 3.708 11 F -0.193 7.193 12 F -0.192 7.192 13 C -0.109 4.109 14 C -0.147 4.147 15 C -0.106 4.106 16 C 0.045 3.955 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.014 0.986 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 25.133 14.468 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.378 5.378 7 C 0.319 3.681 8 O -0.397 6.397 9 C -0.179 4.179 10 C 0.238 3.762 11 F -0.174 7.174 12 F -0.173 7.173 13 C -0.146 4.146 14 C -0.185 4.185 15 C -0.144 4.144 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.032 0.968 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.089 24.964 14.787 29.179 hybrid contribution -0.216 -0.674 -0.906 1.150 sum -3.305 24.290 13.881 28.171 Atomic orbital electron populations 1.22576 0.86868 1.04470 0.98841 1.61546 1.08669 1.11175 1.42868 1.21998 1.00530 0.88999 0.95576 1.21789 1.01774 0.93312 0.99754 1.21415 1.00995 0.92819 0.85233 1.46060 1.57479 1.13532 1.20713 1.19739 0.79119 0.81500 0.87700 1.90732 1.38530 1.64232 1.46249 1.23370 1.03165 0.98444 0.92953 1.21295 0.75837 0.97091 0.81950 1.93037 1.31243 1.97172 1.95982 1.92971 1.84778 1.86242 1.53356 1.22833 0.91823 0.97385 1.02590 1.23082 0.95865 0.98406 1.01101 1.22826 0.98180 0.90327 1.03062 1.21869 1.00719 0.94163 0.91830 1.19735 0.85456 0.86650 0.85223 1.90479 1.43982 1.80154 1.31631 1.41881 1.49422 1.07388 1.21437 1.19748 1.32893 0.82265 1.07901 0.87849 1.25265 0.96821 1.00580 0.95314 1.69618 1.38089 1.35682 1.10911 0.85802 0.78209 0.81936 0.78404 1.19230 1.20795 1.20746 0.96798 0.88604 0.92150 0.94851 0.90530 0.90081 0.91018 0.91242 0.90904 0.76624 0.86813 0.88429 0.89739 0.88463 0.90383 0.90262 0.87679 0.93438 0.89350 0.77489 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.96 60.06 0.54 0.85 16 2 N -0.52 -8.16 4.50 -244.37 -1.10 -9.26 16 3 C 0.06 0.67 4.96 -3.82 -0.02 0.65 16 4 C -0.13 -1.15 5.25 -26.73 -0.14 -1.29 16 5 C 0.12 1.01 5.67 -4.04 -0.02 0.99 16 6 N -0.73 -5.35 5.44 -60.29 -0.33 -5.68 16 7 C 0.54 4.94 6.91 -10.98 -0.08 4.86 16 8 O -0.52 -6.87 15.90 5.56 0.09 -6.78 16 9 C -0.18 -1.20 1.03 -154.85 -0.16 -1.36 16 10 C 0.29 1.87 4.68 37.16 0.17 2.04 16 11 F -0.19 -1.77 17.06 2.25 0.04 -1.73 16 12 F -0.19 -1.33 14.55 2.25 0.03 -1.29 16 13 C -0.11 -0.54 6.96 -25.92 -0.18 -0.72 16 14 C -0.15 -0.78 7.57 -25.92 -0.20 -0.97 16 15 C -0.11 -0.77 6.90 -25.92 -0.18 -0.94 16 16 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.30 7.47 -10.98 -0.08 10.21 16 18 O -0.58 -15.25 13.91 5.54 0.08 -15.17 16 19 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 20 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.10 1.83 5.82 -51.93 -0.30 1.52 16 30 H 0.06 0.77 6.47 -51.93 -0.34 0.44 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.08 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.61 6.55 -51.93 -0.34 0.27 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 1.88 7.38 -40.82 -0.30 1.58 16 38 H 0.11 0.40 7.04 -51.93 -0.37 0.03 16 39 H 0.10 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.08 0.31 8.06 -51.93 -0.42 -0.11 16 41 H 0.10 0.52 6.44 -51.93 -0.33 0.19 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.59 7.94 -51.93 -0.41 0.18 16 44 H 0.10 0.86 7.43 -51.93 -0.39 0.47 16 45 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 46 H 0.09 1.39 7.93 -51.93 -0.41 0.98 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 394.97 15.07 5.95 5.95 Total: -1.00 -33.52 394.97 -7.44 -40.96 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.23 Total: 7.86 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.61 Total: 7.17 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.76 Total: -52.81 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: 0.17 Total: -21.96 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.52 -7.44 -40.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689829730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.306 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds