Wall clock time and date at job start Wed Apr 1 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46905 * 110.99899 * 2 1 4 4 C 1.53003 * 109.46696 * 66.04962 * 3 2 1 5 5 C 1.53001 * 109.47182 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.34784 * 119.99864 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 6 5 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 5 10 10 C 1.53003 * 112.85218 * 48.80574 * 9 7 6 11 11 F 1.39898 * 109.46960 * 69.66238 * 10 9 7 12 12 F 1.39896 * 109.46953 * 189.66708 * 10 9 7 13 13 C 1.53777 * 113.61568 * 277.49596 * 9 7 6 14 14 C 1.53775 * 87.08539 * 220.02224 * 13 9 7 15 15 C 1.53781 * 87.08192 * 25.43251 * 14 13 9 16 16 C 1.46900 * 111.00066 * 236.05354 * 2 1 3 17 17 C 1.50704 * 109.46937 * 293.94969 * 16 2 1 18 18 O 1.21294 * 119.99816 * 359.97438 * 17 16 2 19 19 N 1.34780 * 119.99926 * 179.97438 * 17 16 2 20 20 C 1.37099 * 119.99569 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00345 * 0.02562 * 20 19 17 22 22 C 1.38948 * 119.99465 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00534 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99963 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46697 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46893 * 119.99570 * 24 22 20 27 27 H 1.48489 * 109.47190 * 240.00128 * 24 22 20 28 28 H 1.08996 * 109.47585 * 59.99631 * 1 2 3 29 29 H 1.09000 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46862 * 299.99016 * 1 2 3 31 31 H 1.08993 * 109.47243 * 306.05228 * 3 2 1 32 32 H 1.09001 * 109.47205 * 186.04719 * 3 2 1 33 33 H 1.09007 * 109.47291 * 60.00195 * 4 3 2 34 34 H 1.08993 * 109.47243 * 300.00104 * 4 3 2 35 35 H 1.09007 * 109.46593 * 60.00081 * 5 4 3 36 36 H 1.09006 * 109.47216 * 300.00539 * 5 4 3 37 37 H 0.97000 * 120.00740 * 359.72857 * 6 5 4 38 38 H 1.08999 * 109.46976 * 309.66600 * 10 9 7 39 39 H 1.09004 * 113.61546 * 334.57149 * 13 9 7 40 40 H 1.09003 * 113.61384 * 105.47433 * 13 9 7 41 41 H 1.09005 * 113.61565 * 270.88849 * 14 13 9 42 42 H 1.08999 * 113.61910 * 139.98310 * 14 13 9 43 43 H 1.09001 * 113.61337 * 220.02490 * 15 14 13 44 44 H 1.08993 * 113.61593 * 89.11741 * 15 14 13 45 45 H 1.08999 * 109.47476 * 53.94710 * 16 2 1 46 46 H 1.09003 * 109.47309 * 173.95251 * 16 2 1 47 47 H 0.96997 * 119.99781 * 0.02562 * 19 17 16 48 48 H 0.96995 * 120.00341 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3184 5 6 2.1802 3.4856 1.3187 6 7 1.8312 4.1425 2.5808 7 6 2.2125 5.4155 2.8059 8 8 2.8489 6.0154 1.9656 9 6 1.8482 6.0933 4.1015 10 6 2.1743 5.2414 5.3300 11 9 3.5623 5.1570 5.4837 12 9 1.6140 5.8308 6.4682 13 6 0.4249 6.6752 4.1134 14 6 1.0098 7.8842 4.8623 15 6 2.3564 7.5412 4.2035 16 6 1.9954 -0.7658 -1.1377 17 6 1.6370 -2.2203 -0.9730 18 8 1.0055 -2.5833 -0.0031 19 7 2.0181 -3.1178 -1.9036 20 6 1.6924 -4.4411 -1.7534 21 1 1.1301 -4.7642 -0.8898 22 6 2.0857 -5.3664 -2.7125 23 7 2.7703 -4.9733 -3.7631 24 14 1.6414 -7.1693 -2.5084 25 1 0.8732 -7.3504 -1.2505 26 1 0.8141 -7.6086 -3.6607 27 1 2.8831 -7.9818 -2.4521 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.5610 1.9274 -0.8308 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5014 2.1493 34 1 0.5472 2.0843 1.4267 35 1 1.7461 4.0418 0.4878 36 1 3.2645 3.4582 1.2106 37 1 1.3219 3.6628 3.2527 38 1 1.7619 4.2411 5.1983 39 1 0.0443 6.9185 3.1213 40 1 -0.2799 6.0931 4.7071 41 1 1.0118 7.7673 5.9461 42 1 0.5965 8.8397 4.5394 43 1 3.2109 7.6581 4.8700 44 1 2.5040 8.0212 3.2361 45 1 1.5610 -0.3871 -2.0629 46 1 3.0797 -0.6609 -1.1757 47 1 2.5234 -2.8276 -2.6790 48 1 3.0446 -5.6191 -4.4327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689829730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:38 Heat of formation + Delta-G solvation = -173.685289 kcal Electronic energy + Delta-G solvation = -30147.203960 eV Core-core repulsion = 25486.596091 eV Total energy + Delta-G solvation = -4660.607869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.13759 -48.10246 -41.52933 -40.37360 -38.87754 -38.15566 -36.34105 -35.79515 -33.28353 -32.79706 -30.06807 -29.25288 -27.54671 -26.82331 -26.55236 -25.31978 -23.87280 -22.26245 -21.75474 -20.96151 -20.37766 -19.84507 -19.26377 -18.36721 -18.07010 -17.82634 -17.11819 -17.04622 -16.84725 -16.56164 -16.43204 -16.16271 -15.75506 -15.58707 -15.38371 -15.09257 -14.86625 -14.83015 -14.71356 -14.39996 -13.98056 -13.74460 -13.50753 -13.47948 -13.44587 -13.07127 -13.00306 -12.90234 -12.81058 -12.71389 -12.49716 -12.37569 -12.33388 -12.25706 -12.10566 -11.64276 -11.53994 -11.45063 -11.28773 -10.93498 -10.26567 -10.21956 -9.98508 -9.18344 -8.45487 -5.93981 1.33603 1.37242 1.42432 1.56436 1.92907 2.07318 2.29572 2.51058 2.80556 3.03360 3.09608 3.17993 3.21598 3.44422 3.64330 3.72094 3.88179 3.97154 4.00945 4.06098 4.14883 4.30658 4.36180 4.41920 4.49855 4.56034 4.61981 4.64736 4.65612 4.71924 4.76766 4.81046 4.87894 4.95837 5.03312 5.09134 5.19734 5.26050 5.33756 5.37630 5.42719 5.89907 6.08908 6.24685 6.36981 6.62273 7.04482 7.14660 7.58519 8.14259 8.72142 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.001520 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.828373 B =18418.816252 C =18705.570591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.057 3.943 4 C -0.115 4.115 5 C 0.126 3.874 6 N -0.714 5.714 7 C 0.534 3.466 8 O -0.568 6.568 9 C -0.174 4.174 10 C 0.288 3.712 11 F -0.212 7.212 12 F -0.194 7.194 13 C -0.099 4.099 14 C -0.140 4.140 15 C -0.117 4.117 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.415 0.585 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 25.641 15.018 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.153 4.153 5 C 0.002 3.998 6 N -0.366 5.366 7 C 0.320 3.680 8 O -0.446 6.446 9 C -0.178 4.178 10 C 0.235 3.765 11 F -0.193 7.193 12 F -0.175 7.175 13 C -0.137 4.137 14 C -0.177 4.177 15 C -0.155 4.155 16 C -0.075 4.075 17 C 0.229 3.771 18 O -0.499 6.499 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.197 1.197 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.166 0.834 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.927 25.479 15.351 30.004 hybrid contribution 0.045 -0.760 -1.046 1.294 sum -3.882 24.719 14.305 28.822 Atomic orbital electron populations 1.22468 0.86838 1.02191 1.00810 1.61511 1.08923 1.13530 1.42167 1.22091 1.00838 0.86812 0.97361 1.21639 1.02345 0.92989 0.98294 1.21255 1.00342 0.92529 0.85686 1.45949 1.56922 1.13025 1.20708 1.20107 0.78277 0.81647 0.87972 1.90714 1.40667 1.65366 1.47883 1.23388 1.04496 0.97887 0.92025 1.21642 0.74936 0.98510 0.81455 1.93002 1.32990 1.97280 1.96059 1.92967 1.84643 1.86480 1.53398 1.22853 0.90923 0.96997 1.02901 1.23050 0.94363 0.99179 1.01082 1.22836 0.99100 0.91111 1.02405 1.21746 1.02079 0.90213 0.93453 1.20796 0.83652 0.88796 0.83847 1.90458 1.45111 1.81458 1.32899 1.41961 1.50151 1.07088 1.22201 1.19697 1.34280 0.84051 1.08004 0.90245 1.26033 0.96322 1.04311 0.94718 1.69679 1.38267 1.37085 1.11259 0.84872 0.78208 0.77005 0.78256 1.19738 1.19686 1.19727 0.95445 0.92906 0.89552 0.93603 0.89973 0.90330 0.89968 0.91462 0.91918 0.74817 0.83396 0.88427 0.87599 0.88231 0.89451 0.91180 0.89136 0.91606 0.87368 0.77091 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 8.96 127.69 1.14 1.86 16 2 N -0.54 -15.94 4.50 -927.04 -4.17 -20.12 16 3 C 0.06 1.16 4.96 86.30 0.43 1.59 16 4 C -0.11 -1.75 5.25 30.60 0.16 -1.59 16 5 C 0.13 1.89 5.67 86.38 0.49 2.38 16 6 N -0.71 -9.00 5.44 -463.05 -2.52 -11.52 16 7 C 0.53 9.27 6.91 87.65 0.61 9.88 16 8 O -0.57 -14.95 15.90 -3.04 -0.05 -15.00 16 9 C -0.17 -2.14 1.03 -52.40 -0.05 -2.20 16 10 C 0.29 3.13 4.68 71.98 0.34 3.47 16 11 F -0.21 -3.70 17.06 44.97 0.77 -2.93 16 12 F -0.19 -2.28 14.55 44.97 0.65 -1.62 16 13 C -0.10 -0.77 6.96 31.12 0.22 -0.55 16 14 C -0.14 -1.26 7.57 31.12 0.24 -1.03 16 15 C -0.12 -1.66 6.90 31.12 0.21 -1.44 16 16 C 0.06 1.89 5.45 85.56 0.47 2.35 16 17 C 0.44 20.67 7.47 87.66 0.66 21.33 16 18 O -0.61 -33.10 13.91 -3.07 -0.04 -33.15 16 19 N -0.58 -29.37 5.29 -306.97 -1.62 -31.00 16 20 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 24 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 2.02 5.82 -2.39 -0.01 2.00 16 30 H 0.09 2.00 6.47 -2.38 -0.02 1.99 16 31 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.08 1.60 7.93 -2.39 -0.02 1.58 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.08 1.11 6.55 -2.39 -0.02 1.10 16 35 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.41 2.64 7.38 -92.71 -0.68 1.95 16 38 H 0.15 0.56 7.04 -2.39 -0.02 0.55 16 39 H 0.10 0.80 8.09 -2.38 -0.02 0.78 16 40 H 0.11 0.40 8.06 -2.39 -0.02 0.38 16 41 H 0.10 0.89 6.44 -2.38 -0.02 0.87 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 1.09 7.94 -2.39 -0.02 1.07 16 44 H 0.09 1.55 7.43 -2.39 -0.02 1.53 16 45 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 46 H 0.11 3.21 7.93 -2.39 -0.02 3.19 16 47 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 48 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -74.40 394.97 1.09 -73.31 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.41 Total: 28.70 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 6.18 Total: 17.90 kcal Atomic # 7 Polarization: -103.96 SS G_CDS: -8.03 Total: -111.99 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -0.09 Total: -48.14 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 1.42 Total: -4.56 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -74.40 1.09 -73.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689829730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.377 kcal (2) G-P(sol) polarization free energy of solvation -74.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds