Wall clock time and date at job start Wed Apr 1 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99826 * 2 1 4 4 C 1.50705 * 109.46909 * 293.95301 * 3 2 1 5 5 O 1.21287 * 119.99876 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99806 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99954 * 180.02562 * 6 4 3 8 8 H 1.07994 * 119.99817 * 359.71805 * 7 6 4 9 9 C 1.38951 * 119.99889 * 179.71963 * 7 6 4 10 10 N 1.31413 * 119.99811 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47350 * 89.99868 * 11 9 7 13 13 H 1.48501 * 109.47394 * 210.00360 * 11 9 7 14 14 H 1.48502 * 109.47201 * 330.00050 * 11 9 7 15 15 C 1.46899 * 110.99725 * 123.95259 * 2 1 3 16 16 H 1.09000 * 109.50069 * 296.04394 * 15 2 1 17 17 C 1.53046 * 109.50012 * 56.11111 * 15 2 1 18 18 C 1.53034 * 109.53978 * 181.28173 * 17 15 2 19 19 C 1.53202 * 109.33972 * 298.68514 * 18 17 15 20 20 N 1.46924 * 108.77394 * 54.61958 * 19 18 17 21 21 C 1.34774 * 120.62896 * 126.37432 * 20 19 18 22 22 O 1.21520 * 119.99874 * 176.21850 * 21 20 19 23 23 C 1.48135 * 120.00183 * 356.21175 * 21 20 19 24 24 C 1.40111 * 121.14167 * 49.70338 * 23 21 20 25 25 C 1.38505 * 117.82067 * 179.97438 * 24 23 21 26 26 N 1.31922 * 119.96674 * 0.02562 * 25 24 23 27 27 N 1.28279 * 122.51861 * 0.02562 * 26 25 24 28 28 C 1.31915 * 122.32205 * 359.71934 * 27 26 25 29 29 C 1.46924 * 118.74181 * 306.38904 * 20 19 18 30 30 H 1.08995 * 109.46722 * 60.00240 * 1 2 3 31 31 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46888 * 299.99974 * 1 2 3 33 33 H 1.09006 * 109.46880 * 173.95341 * 3 2 1 34 34 H 1.08998 * 109.47269 * 53.94990 * 3 2 1 35 35 H 0.97007 * 120.00130 * 359.71684 * 6 4 3 36 36 H 0.97009 * 119.99525 * 179.97438 * 10 9 7 37 37 H 1.08992 * 109.45758 * 301.33519 * 17 15 2 38 38 H 1.09004 * 109.45719 * 61.29712 * 17 15 2 39 39 H 1.08996 * 109.49718 * 178.71622 * 18 17 15 40 40 H 1.09000 * 109.49975 * 58.65147 * 18 17 15 41 41 H 1.09001 * 109.58256 * 294.82957 * 19 18 17 42 42 H 1.09002 * 109.69909 * 174.47766 * 19 18 17 43 43 H 1.07991 * 121.09073 * 0.02562 * 24 23 21 44 44 H 1.08000 * 120.01487 * 180.02562 * 25 24 23 45 45 H 1.08010 * 120.16816 * 180.27384 * 28 27 26 46 46 H 1.09006 * 109.58893 * 293.82771 * 29 20 19 47 47 H 1.08992 * 109.59016 * 173.39782 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0188 3.3198 -1.5238 7 6 1.6922 3.9347 -2.7048 8 1 1.1328 3.3976 -3.4565 9 6 2.0809 5.2487 -2.9347 10 7 2.7621 5.9019 -2.0202 11 14 1.6353 6.0867 -4.5435 12 1 0.3204 6.7621 -4.4023 13 1 2.6744 7.0921 -4.8825 14 1 1.5570 5.0721 -5.6251 15 6 1.9955 -0.7660 1.1376 16 1 1.7047 -0.2802 2.0691 17 6 1.4275 -2.1867 1.1035 18 6 1.9501 -2.9759 2.3060 19 6 3.4778 -3.0631 2.2305 20 7 4.0240 -1.7039 2.1172 21 6 4.9661 -1.2686 2.9771 22 8 5.4595 -0.1677 2.8315 23 6 5.3999 -2.1321 4.0999 24 6 5.7686 -3.4669 3.8869 25 6 6.1636 -4.2117 4.9858 26 7 6.1830 -3.6594 6.1837 27 7 5.8457 -2.4383 6.3855 28 6 5.4592 -1.6423 5.4072 29 6 3.5236 -0.8282 1.0489 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.0798 1.3444 0.1083 34 1 1.5611 1.9274 0.8308 35 1 2.5210 3.8023 -0.8485 36 1 3.0338 6.8192 -2.1809 37 1 0.3391 -2.1437 1.1420 38 1 1.7389 -2.6802 0.1828 39 1 1.5273 -3.9804 2.2935 40 1 1.6597 -2.4704 3.2270 41 1 3.7676 -3.6475 1.3572 42 1 3.8637 -3.5381 3.1325 43 1 5.7464 -3.9006 2.8981 44 1 6.4556 -5.2441 4.8621 45 1 5.1869 -0.6182 5.6161 46 1 3.8172 -1.2302 0.0791 47 1 3.9378 0.1724 1.1725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690820072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:43 Heat of formation + Delta-G solvation = 15.760702 kcal Electronic energy + Delta-G solvation = -30481.503898 eV Core-core repulsion = 26279.800210 eV Total energy + Delta-G solvation = -4201.703688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81421 -40.39515 -38.87026 -37.79559 -35.97936 -34.09239 -33.76822 -33.05588 -32.71395 -31.24161 -30.35483 -28.30227 -26.63975 -25.63417 -25.13768 -24.43327 -24.00676 -22.36234 -20.88300 -19.80867 -19.14553 -18.43114 -17.84187 -17.76185 -17.28936 -16.73648 -16.23783 -15.64866 -15.51957 -15.19049 -15.02160 -14.91153 -14.70998 -14.51866 -14.32945 -14.06768 -13.84286 -13.63345 -13.44845 -13.21616 -13.10921 -12.72444 -12.07294 -11.79351 -11.69284 -11.53489 -11.50455 -11.42903 -11.26737 -11.10515 -10.92962 -10.89165 -10.63448 -10.57931 -10.48361 -10.38973 -10.21379 -10.02302 -9.47848 -9.08869 -8.49132 -7.99579 -7.89921 -6.41151 -3.82189 -0.10307 0.32471 2.08489 2.37576 3.00873 3.17674 3.26526 3.32114 3.56288 3.65719 3.84369 3.89860 3.91711 3.97043 4.20124 4.22537 4.42821 4.48207 4.52815 4.73038 4.83991 4.89994 4.95621 5.06440 5.11837 5.17954 5.24705 5.26372 5.36556 5.48891 5.53085 5.54915 5.64200 5.69309 5.72068 5.81559 5.89425 5.94515 6.04346 6.07610 6.27488 6.51548 6.84301 7.17851 7.29827 7.55437 7.58308 8.06284 8.12511 8.61744 9.18166 9.54610 10.06039 10.76475 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.002235 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.769701 B =12523.523685 C =13663.828561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.510 5.510 3 C 0.040 3.960 4 C 0.445 3.555 5 O -0.578 6.578 6 N -0.563 5.563 7 C -0.299 4.299 8 H 0.103 0.897 9 C 0.022 3.978 10 N -0.901 5.901 11 Si 0.930 3.070 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.071 3.929 16 H 0.042 0.958 17 C -0.116 4.116 18 C -0.133 4.133 19 C 0.094 3.906 20 N -0.597 5.597 21 C 0.561 3.439 22 O -0.514 6.514 23 C -0.117 4.117 24 C -0.090 4.090 25 C 0.040 3.960 26 N -0.231 5.231 27 N -0.238 5.238 28 C 0.087 3.913 29 C 0.115 3.885 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.014 0.986 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.159 0.841 44 H 0.181 0.819 45 H 0.181 0.819 46 H 0.087 0.913 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 -21.525 13.639 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.234 5.234 3 C -0.092 4.092 4 C 0.230 3.770 5 O -0.463 6.463 6 N -0.200 5.200 7 C -0.428 4.428 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.542 5.542 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.194 1.194 15 C -0.038 4.038 16 H 0.060 0.940 17 C -0.154 4.154 18 C -0.172 4.172 19 C -0.029 4.029 20 N -0.330 5.330 21 C 0.346 3.654 22 O -0.389 6.389 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.124 4.124 26 N -0.073 5.073 27 N -0.079 5.079 28 C -0.077 4.077 29 C -0.007 4.007 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.177 0.823 44 H 0.198 0.802 45 H 0.198 0.802 46 H 0.105 0.895 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.296 -21.522 14.167 25.977 hybrid contribution -0.430 1.363 -1.182 1.855 sum 2.866 -20.159 12.986 24.150 Atomic orbital electron populations 1.22605 0.86317 1.01636 1.02138 1.61593 1.08878 1.12789 1.40184 1.21982 1.00912 0.88847 0.97427 1.19657 0.85513 0.82988 0.88834 1.90474 1.44034 1.64664 1.47101 1.41874 1.49390 1.10732 1.17982 1.19685 1.33155 0.95305 0.94699 0.87898 1.25273 0.96813 0.96677 0.99227 1.69621 1.38043 1.12123 1.34387 0.85859 0.78009 0.78905 0.81518 1.20449 1.20925 1.19412 1.21930 0.94049 0.94915 0.92916 0.94044 1.21669 1.01082 0.94262 0.98388 1.21924 0.94382 1.01414 0.99456 1.22147 0.94885 0.82946 1.02905 1.47996 1.39038 1.15045 1.30965 1.17993 0.80043 0.86027 0.81325 1.90885 1.54553 1.20384 1.73034 1.21214 1.00613 0.95151 0.96219 1.22718 0.94559 0.92703 1.02000 1.24374 0.96184 1.02366 0.89483 1.72921 1.08251 1.04660 1.21516 1.73155 1.07310 0.98571 1.28832 1.24520 0.93061 1.01897 0.88237 1.21835 0.93350 0.95893 0.89591 0.88282 0.91769 0.96732 0.89184 0.93379 0.77460 0.91848 0.90787 0.90364 0.90030 0.91507 0.90157 0.89656 0.82303 0.80233 0.80213 0.89485 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.84 60.07 0.53 0.84 16 2 N -0.51 -7.95 4.37 -236.17 -1.03 -8.98 16 3 C 0.04 0.70 5.26 -4.97 -0.03 0.67 16 4 C 0.44 10.35 7.51 -10.98 -0.08 10.26 16 5 O -0.58 -15.17 13.89 5.55 0.08 -15.09 16 6 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 7 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 11 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 C 0.07 0.85 2.09 -67.59 -0.14 0.70 16 16 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 17 C -0.12 -1.04 4.86 -26.69 -0.13 -1.17 16 18 C -0.13 -0.84 6.08 -26.61 -0.16 -1.00 16 19 C 0.09 0.55 5.44 -3.71 -0.02 0.53 16 20 N -0.60 -5.61 2.97 -173.77 -0.52 -6.12 16 21 C 0.56 6.10 7.32 -12.20 -0.09 6.01 16 22 O -0.51 -7.70 16.48 5.35 0.09 -7.61 16 23 C -0.12 -1.00 5.06 -104.58 -0.53 -1.52 16 24 C -0.09 -0.50 7.57 -38.78 -0.29 -0.80 16 25 C 0.04 0.23 11.30 -17.41 -0.20 0.03 16 26 N -0.23 -2.19 11.48 30.53 0.35 -1.84 16 27 N -0.24 -2.50 11.49 30.78 0.35 -2.14 16 28 C 0.09 0.80 11.07 -16.96 -0.19 0.62 16 29 C 0.12 1.35 5.32 -3.71 -0.02 1.33 16 30 H 0.10 1.87 5.88 -51.93 -0.31 1.57 16 31 H 0.06 0.81 5.98 -51.93 -0.31 0.50 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 1.49 5.95 -51.93 -0.31 1.18 16 34 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 36 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.07 0.67 6.19 -51.93 -0.32 0.34 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.38 4.49 -51.93 -0.23 0.14 16 43 H 0.16 0.45 7.10 -52.49 -0.37 0.08 16 44 H 0.18 0.36 8.06 -52.49 -0.42 -0.07 16 45 H 0.18 1.45 8.06 -52.48 -0.42 1.02 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.10 1.37 5.40 -51.93 -0.28 1.09 16 LS Contribution 378.40 15.07 5.70 5.70 Total: -1.00 -34.47 378.40 -7.11 -41.59 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.19 Total: 8.17 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.59 Total: 8.56 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.18 Total: -57.36 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.17 Total: -22.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.47 -7.11 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690820072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.348 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds