Wall clock time and date at job start Wed Apr 1 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46898 * 110.99826 * 2 1 4 4 C 1.50705 * 109.46909 * 293.95301 * 3 2 1 5 5 O 1.21287 * 119.99876 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99806 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99954 * 180.02562 * 6 4 3 8 8 H 1.07994 * 119.99817 * 359.71805 * 7 6 4 9 9 C 1.38951 * 119.99889 * 179.71963 * 7 6 4 10 10 N 1.31413 * 119.99811 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00011 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47350 * 89.99868 * 11 9 7 13 13 H 1.48501 * 109.47394 * 210.00360 * 11 9 7 14 14 H 1.48502 * 109.47201 * 330.00050 * 11 9 7 15 15 C 1.46899 * 110.99725 * 123.95259 * 2 1 3 16 16 H 1.09000 * 109.50069 * 296.04394 * 15 2 1 17 17 C 1.53046 * 109.50012 * 56.11111 * 15 2 1 18 18 C 1.53034 * 109.53978 * 181.28173 * 17 15 2 19 19 C 1.53202 * 109.33972 * 298.68514 * 18 17 15 20 20 N 1.46924 * 108.77394 * 54.61958 * 19 18 17 21 21 C 1.34774 * 120.62896 * 126.37432 * 20 19 18 22 22 O 1.21520 * 119.99874 * 176.21850 * 21 20 19 23 23 C 1.48135 * 120.00183 * 356.21175 * 21 20 19 24 24 C 1.40111 * 121.14167 * 49.70338 * 23 21 20 25 25 C 1.38505 * 117.82067 * 179.97438 * 24 23 21 26 26 N 1.31922 * 119.96674 * 0.02562 * 25 24 23 27 27 N 1.28279 * 122.51861 * 0.02562 * 26 25 24 28 28 C 1.31915 * 122.32205 * 359.71934 * 27 26 25 29 29 C 1.46924 * 118.74181 * 306.38904 * 20 19 18 30 30 H 1.08995 * 109.46722 * 60.00240 * 1 2 3 31 31 H 1.09002 * 109.46661 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46888 * 299.99974 * 1 2 3 33 33 H 1.09006 * 109.46880 * 173.95341 * 3 2 1 34 34 H 1.08998 * 109.47269 * 53.94990 * 3 2 1 35 35 H 0.97007 * 120.00130 * 359.71684 * 6 4 3 36 36 H 0.97009 * 119.99525 * 179.97438 * 10 9 7 37 37 H 1.08992 * 109.45758 * 301.33519 * 17 15 2 38 38 H 1.09004 * 109.45719 * 61.29712 * 17 15 2 39 39 H 1.08996 * 109.49718 * 178.71622 * 18 17 15 40 40 H 1.09000 * 109.49975 * 58.65147 * 18 17 15 41 41 H 1.09001 * 109.58256 * 294.82957 * 19 18 17 42 42 H 1.09002 * 109.69909 * 174.47766 * 19 18 17 43 43 H 1.07991 * 121.09073 * 0.02562 * 24 23 21 44 44 H 1.08000 * 120.01487 * 180.02562 * 25 24 23 45 45 H 1.08010 * 120.16816 * 180.27384 * 28 27 26 46 46 H 1.09006 * 109.58893 * 293.82771 * 29 20 19 47 47 H 1.08992 * 109.59016 * 173.39782 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0055 1.4452 -2.1411 6 7 2.0188 3.3198 -1.5238 7 6 1.6922 3.9347 -2.7048 8 1 1.1328 3.3976 -3.4565 9 6 2.0809 5.2487 -2.9347 10 7 2.7621 5.9019 -2.0202 11 14 1.6353 6.0867 -4.5435 12 1 0.3204 6.7621 -4.4023 13 1 2.6744 7.0921 -4.8825 14 1 1.5570 5.0721 -5.6251 15 6 1.9955 -0.7660 1.1376 16 1 1.7047 -0.2802 2.0691 17 6 1.4275 -2.1867 1.1035 18 6 1.9501 -2.9759 2.3060 19 6 3.4778 -3.0631 2.2305 20 7 4.0240 -1.7039 2.1172 21 6 4.9661 -1.2686 2.9771 22 8 5.4595 -0.1677 2.8315 23 6 5.3999 -2.1321 4.0999 24 6 5.7686 -3.4669 3.8869 25 6 6.1636 -4.2117 4.9858 26 7 6.1830 -3.6594 6.1837 27 7 5.8457 -2.4383 6.3855 28 6 5.4592 -1.6423 5.4072 29 6 3.5236 -0.8282 1.0489 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.0798 1.3444 0.1083 34 1 1.5611 1.9274 0.8308 35 1 2.5210 3.8023 -0.8485 36 1 3.0338 6.8192 -2.1809 37 1 0.3391 -2.1437 1.1420 38 1 1.7389 -2.6802 0.1828 39 1 1.5273 -3.9804 2.2935 40 1 1.6597 -2.4704 3.2270 41 1 3.7676 -3.6475 1.3572 42 1 3.8637 -3.5381 3.1325 43 1 5.7464 -3.9006 2.8981 44 1 6.4556 -5.2441 4.8621 45 1 5.1869 -0.6182 5.6161 46 1 3.8172 -1.2302 0.0791 47 1 3.9378 0.1724 1.1725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690820072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:42 Heat of formation + Delta-G solvation = -10.981110 kcal Electronic energy + Delta-G solvation = -30482.663510 eV Core-core repulsion = 26279.800210 eV Total energy + Delta-G solvation = -4202.863300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.46377 -41.22676 -40.34623 -39.07203 -37.10367 -35.87887 -34.65835 -33.64201 -33.50150 -33.24884 -31.26269 -29.70008 -27.48041 -26.97252 -25.92075 -25.57923 -24.98035 -23.25600 -21.76447 -20.98544 -20.58623 -19.86221 -19.11434 -18.46655 -17.93460 -17.80424 -17.45353 -16.66505 -16.62982 -16.40467 -16.12536 -15.90338 -15.81046 -15.63097 -15.41614 -15.30074 -15.03766 -14.62977 -14.53325 -14.16624 -14.10331 -13.82599 -13.56667 -13.42208 -12.99541 -12.83182 -12.62485 -12.47498 -12.40449 -12.13132 -12.10408 -12.04837 -11.83846 -11.71302 -11.46272 -11.44332 -11.23748 -11.13638 -10.69781 -10.30330 -10.01659 -9.87419 -9.29263 -8.46979 -5.96084 -0.69674 -0.20539 1.28153 1.37193 1.40716 1.53907 1.61608 2.03025 2.27200 2.41711 2.70043 2.99568 3.04829 3.19167 3.33838 3.36719 3.51458 3.64781 3.77839 3.82816 3.88241 3.98870 4.18045 4.21014 4.29330 4.35021 4.38872 4.44542 4.49477 4.54310 4.56146 4.63161 4.70947 4.75421 4.78686 4.92200 5.01304 5.02993 5.07690 5.23421 5.25768 5.37991 5.40819 5.83399 6.02409 6.09052 6.16603 6.58808 6.78220 7.11721 7.53994 7.54759 8.09764 8.70573 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017709 B = 0.002235 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.769701 B =12523.523685 C =13663.828561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.522 5.522 3 C 0.053 3.947 4 C 0.445 3.555 5 O -0.609 6.609 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.082 0.918 9 C -0.016 4.016 10 N -0.923 5.923 11 Si 0.995 3.005 12 H -0.270 1.270 13 H -0.272 1.272 14 H -0.271 1.271 15 C 0.076 3.924 16 H 0.037 0.963 17 C -0.112 4.112 18 C -0.126 4.126 19 C 0.088 3.912 20 N -0.590 5.590 21 C 0.562 3.438 22 O -0.567 6.567 23 C -0.129 4.129 24 C -0.067 4.067 25 C 0.053 3.947 26 N -0.262 5.262 27 N -0.268 5.268 28 C 0.079 3.921 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.394 0.606 36 H 0.277 0.723 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.197 0.803 44 H 0.225 0.775 45 H 0.178 0.822 46 H 0.086 0.914 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -24.559 13.818 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.247 5.247 3 C -0.079 4.079 4 C 0.232 3.768 5 O -0.495 6.495 6 N -0.213 5.213 7 C -0.460 4.460 8 H 0.100 0.900 9 C -0.216 4.216 10 N -0.564 5.564 11 Si 0.818 3.182 12 H -0.196 1.196 13 H -0.197 1.197 14 H -0.195 1.195 15 C -0.033 4.033 16 H 0.055 0.945 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.033 4.033 20 N -0.322 5.322 21 C 0.349 3.651 22 O -0.445 6.445 23 C -0.143 4.143 24 C -0.097 4.097 25 C -0.112 4.112 26 N -0.103 5.103 27 N -0.108 5.108 28 C -0.087 4.087 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.041 0.959 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.214 0.786 44 H 0.241 0.759 45 H 0.195 0.805 46 H 0.104 0.896 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.349 -24.600 14.390 28.696 hybrid contribution -0.460 2.172 -1.237 2.541 sum 2.889 -22.429 13.153 26.161 Atomic orbital electron populations 1.22498 0.86174 1.03049 1.00464 1.61566 1.09160 1.11429 1.42567 1.21794 1.01739 0.90108 0.94217 1.20599 0.83779 0.82235 0.90197 1.90450 1.44985 1.65230 1.48802 1.41972 1.50126 1.11619 1.17627 1.19673 1.34506 0.96225 0.95553 0.89993 1.26093 0.96286 0.96714 1.02493 1.69695 1.38334 1.12539 1.35850 0.84900 0.78190 0.77780 0.77305 1.19589 1.19712 1.19547 1.22001 0.94046 0.96193 0.91036 0.94481 1.21675 1.01169 0.92258 0.99913 1.21913 0.94489 1.02446 0.97598 1.22503 0.94669 0.81047 1.05071 1.48042 1.38335 1.16076 1.29728 1.18326 0.79645 0.85558 0.81610 1.90859 1.56543 1.22778 1.74357 1.21007 1.02234 0.96287 0.94805 1.23134 0.91924 0.90993 1.03641 1.25044 0.94181 1.03905 0.88039 1.72819 1.09257 1.04434 1.23795 1.73116 1.08683 0.99413 1.29616 1.24523 0.93452 1.01934 0.88750 1.21608 0.93199 0.95249 0.90352 0.92330 0.88840 0.95895 0.88094 0.92291 0.77290 0.91364 0.90537 0.90229 0.86938 0.92110 0.87680 0.87582 0.78640 0.75911 0.80530 0.89602 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 8.84 127.69 1.13 1.90 16 2 N -0.52 -16.13 4.37 -901.11 -3.94 -20.06 16 3 C 0.05 1.90 5.26 85.56 0.45 2.35 16 4 C 0.44 21.42 7.51 87.66 0.66 22.08 16 5 O -0.61 -33.11 13.89 -3.05 -0.04 -33.16 16 6 N -0.58 -30.31 5.29 -306.99 -1.62 -31.93 16 7 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 8 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 9 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 10 N -0.92 -51.13 13.05 21.66 0.28 -50.84 16 11 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 C 0.08 1.71 2.09 45.00 0.09 1.80 16 16 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 17 C -0.11 -1.69 4.86 30.62 0.15 -1.54 16 18 C -0.13 -1.08 6.08 30.67 0.19 -0.90 16 19 C 0.09 0.68 5.44 86.37 0.47 1.15 16 20 N -0.59 -10.00 2.97 -821.96 -2.44 -12.44 16 21 C 0.56 11.83 7.32 86.87 0.64 12.46 16 22 O -0.57 -17.59 16.48 -3.78 -0.06 -17.66 16 23 C -0.13 -1.99 5.06 -19.83 -0.10 -2.09 16 24 C -0.07 -0.49 7.57 22.79 0.17 -0.32 16 25 C 0.05 0.41 11.30 84.74 0.96 1.37 16 26 N -0.26 -4.49 11.48 -57.33 -0.66 -5.15 16 27 N -0.27 -5.55 11.49 -56.53 -0.65 -6.20 16 28 C 0.08 1.45 11.07 85.04 0.94 2.39 16 29 C 0.12 2.71 5.32 86.37 0.46 3.17 16 30 H 0.06 2.27 5.88 -2.39 -0.01 2.25 16 31 H 0.09 2.21 5.98 -2.39 -0.01 2.20 16 32 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 3.45 5.95 -2.38 -0.01 3.43 16 34 H 0.06 2.00 8.12 -2.39 -0.02 1.99 16 35 H 0.39 20.07 7.90 -92.70 -0.73 19.34 16 36 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 37 H 0.08 1.14 6.19 -2.39 -0.01 1.12 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.11 0.42 4.49 -2.39 -0.01 0.41 16 43 H 0.20 -0.03 7.10 -2.92 -0.02 -0.05 16 44 H 0.22 -0.36 8.06 -2.91 -0.02 -0.38 16 45 H 0.18 3.10 8.06 -2.91 -0.02 3.08 16 46 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 47 H 0.07 2.05 5.40 -2.39 -0.01 2.03 16 Total: -1.00 -79.80 378.40 0.67 -79.13 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.29 Total: 27.54 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 7.49 Total: 25.27 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -9.03 Total: -126.63 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.10 Total: -50.81 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -79.80 0.67 -79.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690820072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.150 kcal (2) G-P(sol) polarization free energy of solvation -79.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds