Wall clock time and date at job start Wed Apr 1 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47381 * 2 1 4 4 C 1.46897 * 110.99920 * 297.55373 * 3 2 1 5 5 C 1.53001 * 109.46907 * 288.26443 * 4 3 2 6 6 N 1.46500 * 109.47032 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00262 * 180.02562 * 6 5 4 8 8 O 1.21282 * 119.99737 * 359.97438 * 7 6 5 9 9 C 1.50691 * 120.00300 * 180.02562 * 7 6 5 10 10 H 1.09011 * 110.43516 * 302.53886 * 9 7 6 11 11 C 1.54893 * 110.49020 * 65.22010 * 9 7 6 12 12 C 1.54886 * 102.74598 * 156.62191 * 11 9 7 13 13 C 1.54265 * 104.19929 * 322.05976 * 12 11 9 14 14 F 1.39904 * 110.03141 * 264.32517 * 13 12 11 15 15 F 1.39907 * 110.07407 * 142.92059 * 13 12 11 16 16 C 1.53872 * 106.59725 * 23.61350 * 13 12 11 17 17 C 1.46898 * 110.99769 * 61.50393 * 3 2 1 18 18 C 1.50708 * 109.47204 * 66.04852 * 17 3 2 19 19 O 1.21294 * 119.99583 * 0.02562 * 18 17 3 20 20 N 1.34775 * 120.00093 * 179.97438 * 18 17 3 21 21 C 1.37096 * 119.99712 * 179.72390 * 20 18 17 22 22 H 1.07998 * 120.00355 * 0.27543 * 21 20 18 23 23 C 1.38954 * 119.99484 * 180.28075 * 21 20 18 24 24 N 1.31411 * 120.00584 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99730 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47186 * 89.99523 * 25 23 21 27 27 H 1.48499 * 109.47332 * 209.99676 * 25 23 21 28 28 H 1.48496 * 109.47110 * 329.99639 * 25 23 21 29 29 H 1.09000 * 109.46622 * 301.26273 * 1 2 3 30 30 H 1.08994 * 109.47292 * 61.26720 * 1 2 3 31 31 H 1.08999 * 109.46937 * 181.27129 * 1 2 3 32 32 H 1.09000 * 109.47019 * 239.99816 * 2 1 3 33 33 H 1.09003 * 109.47151 * 120.00267 * 2 1 3 34 34 H 1.08996 * 109.47550 * 48.26904 * 4 3 2 35 35 H 1.08998 * 109.46814 * 168.26795 * 4 3 2 36 36 H 1.08996 * 109.47498 * 299.94711 * 5 4 3 37 37 H 1.09002 * 109.46926 * 59.94685 * 5 4 3 38 38 H 0.97003 * 120.00091 * 0.02562 * 6 5 4 39 39 H 1.08992 * 110.75414 * 274.93495 * 11 9 7 40 40 H 1.08998 * 110.74977 * 38.31200 * 11 9 7 41 41 H 1.09001 * 110.48464 * 203.38084 * 12 11 9 42 42 H 1.09001 * 110.60104 * 80.79732 * 12 11 9 43 43 H 1.09004 * 110.02557 * 240.71427 * 16 13 12 44 44 H 1.08994 * 110.07405 * 119.31079 * 16 13 12 45 45 H 1.08997 * 109.47166 * 306.04916 * 17 3 2 46 46 H 1.08999 * 109.47138 * 186.04799 * 17 3 2 47 47 H 0.97006 * 119.99644 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00393 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5971 2.0927 -1.2159 5 6 2.3841 1.5606 -2.4152 6 7 1.9622 2.2661 -3.6279 7 6 2.5233 1.9610 -4.8148 8 8 3.3778 1.1027 -4.8787 9 6 2.0898 2.6870 -6.0621 10 1 1.0167 2.5722 -6.2157 11 6 2.4708 4.1859 -5.9771 12 6 2.5310 4.6082 -7.4660 13 6 3.1498 3.3889 -8.1804 14 9 4.5294 3.5687 -8.3270 15 9 2.5539 3.2134 -9.4340 16 6 2.8691 2.1674 -7.2878 17 6 1.5783 2.0994 1.2053 18 6 2.2308 1.4884 2.4187 19 8 2.9893 0.5504 2.2917 20 7 1.9723 1.9849 3.6447 21 6 2.5615 1.4254 4.7489 22 1 3.2362 0.5897 4.6360 23 6 2.2904 1.9336 6.0135 24 7 1.4698 2.9507 6.1509 25 14 3.0937 1.1718 7.5181 26 1 4.3829 1.8566 7.7911 27 1 2.1944 1.3241 8.6900 28 1 3.3425 -0.2709 7.2694 29 1 -0.3632 0.5333 0.8785 30 1 -0.3633 0.4940 -0.9011 31 1 -0.3633 -1.0274 0.0228 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5318 1.9303 -1.3792 35 1 1.7884 3.1596 -1.1002 36 1 3.4493 1.7241 -2.2524 37 1 2.1936 0.4936 -2.5303 38 1 1.2790 2.9528 -3.5767 39 1 1.7038 4.7499 -5.4463 40 1 3.4431 4.3108 -5.5005 41 1 3.1667 5.4852 -7.5884 42 1 1.5301 4.8073 -7.8490 43 1 3.8080 1.7146 -6.9688 44 1 2.2684 1.4376 -7.8304 45 1 0.4950 2.0217 1.2974 46 1 1.8622 3.1490 1.1299 47 1 1.3660 2.7353 3.7461 48 1 1.2808 3.3057 7.0336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691022209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:23 Heat of formation + Delta-G solvation = -201.140764 kcal Electronic energy + Delta-G solvation = -30288.180941 eV Core-core repulsion = 25626.382513 eV Total energy + Delta-G solvation = -4661.798428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.93866 -48.02948 -41.15057 -40.49684 -38.61617 -37.61424 -36.02548 -35.64181 -33.26245 -31.61521 -31.02292 -30.21557 -29.02137 -27.55308 -25.95178 -24.79846 -23.23115 -22.06280 -21.76305 -21.01462 -20.55588 -19.74114 -18.92623 -18.23726 -17.74387 -17.53688 -17.34336 -17.13371 -16.77295 -16.51585 -16.44854 -16.01943 -15.75538 -15.35481 -15.22571 -15.15711 -14.88892 -14.55330 -14.51721 -14.37246 -14.17168 -13.97556 -13.63361 -13.40993 -13.21952 -13.04444 -12.97228 -12.89757 -12.77408 -12.75761 -12.49682 -12.39925 -12.34851 -12.16205 -12.06880 -11.91732 -11.67155 -11.65482 -11.36135 -10.92913 -10.24458 -10.10141 -9.96774 -9.12312 -8.44681 -5.92467 1.38396 1.42233 1.54221 1.58106 1.95590 2.09807 2.30920 2.76197 2.89305 3.02038 3.09481 3.22570 3.40624 3.46498 3.83213 3.86803 3.97454 4.04849 4.08982 4.21546 4.22168 4.31270 4.32718 4.33928 4.40377 4.44046 4.53008 4.61478 4.64387 4.75184 4.87325 4.88806 4.92248 4.98443 5.02014 5.05772 5.14439 5.19340 5.38542 5.40945 5.44063 5.91222 6.10326 6.24807 6.55048 6.64299 7.16470 7.24937 7.60634 8.17464 8.72601 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.001594 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.152520 B =17566.381461 C =17796.115656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.047 3.953 5 C 0.131 3.869 6 N -0.707 5.707 7 C 0.517 3.483 8 O -0.588 6.588 9 C -0.100 4.100 10 H 0.150 0.850 11 C -0.108 4.108 12 C -0.151 4.151 13 C 0.270 3.730 14 F -0.215 7.215 15 F -0.208 7.208 16 C -0.157 4.157 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.421 0.579 39 H 0.130 0.870 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 7.745 -26.667 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.081 4.081 5 C 0.006 3.994 6 N -0.359 5.359 7 C 0.304 3.696 8 O -0.468 6.468 9 C -0.121 4.121 10 H 0.167 0.833 11 C -0.145 4.145 12 C -0.188 4.188 13 C 0.234 3.766 14 F -0.196 7.196 15 F -0.189 7.189 16 C -0.195 4.195 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.259 0.741 39 H 0.148 0.852 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.095 0.905 46 H 0.131 0.869 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.701 6.605 -26.637 28.250 hybrid contribution -0.438 -0.128 0.894 1.004 sum -7.139 6.477 -25.743 27.488 Atomic orbital electron populations 1.22341 0.96713 1.02933 1.02142 1.22223 0.93769 0.89820 1.02575 1.61540 1.60796 1.02476 1.00908 1.22293 0.98495 0.99379 0.87917 1.21044 0.98784 0.96191 0.83371 1.45672 1.42712 1.41401 1.06152 1.20896 0.80701 0.82402 0.85629 1.90733 1.34048 1.35081 1.86903 1.22122 1.03782 0.96461 0.89736 0.83259 1.22564 1.04266 0.91940 0.95739 1.23405 1.04712 0.95258 0.95453 1.22233 0.74259 0.99654 0.80496 1.93000 1.33837 1.96550 1.96259 1.93001 1.83311 1.96685 1.45876 1.23071 1.04034 0.96476 0.95937 1.21773 0.98704 0.98936 0.87940 1.20867 0.85386 0.85916 0.85002 1.90476 1.41190 1.32168 1.86390 1.41916 1.42566 1.31774 1.05027 1.19618 1.25540 1.15330 0.85536 0.90564 1.25966 0.97351 0.96706 1.01165 1.69657 1.35861 1.24907 1.25649 0.84980 0.78130 0.78316 0.77229 1.19808 1.19519 1.19999 0.93327 0.90269 0.91666 0.90583 0.92319 0.91190 0.88328 0.93106 0.92741 0.74144 0.85227 0.91279 0.87913 0.85482 0.89695 0.87618 0.90530 0.86946 0.76987 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 9.28 71.98 0.67 -3.60 16 2 C 0.04 1.33 5.57 86.30 0.48 1.81 16 3 N -0.53 -15.61 4.41 -900.80 -3.97 -19.58 16 4 C 0.05 0.86 4.95 86.30 0.43 1.28 16 5 C 0.13 2.66 5.72 86.38 0.49 3.15 16 6 N -0.71 -9.20 5.54 -463.07 -2.57 -11.77 16 7 C 0.52 8.95 7.13 87.65 0.62 9.58 16 8 O -0.59 -16.94 15.42 -3.04 -0.05 -16.99 16 9 C -0.10 -0.88 3.25 -10.47 -0.03 -0.92 16 10 H 0.15 0.29 8.14 -2.38 -0.02 0.27 16 11 C -0.11 -0.54 6.31 31.89 0.20 -0.34 16 12 C -0.15 -0.93 6.40 31.67 0.20 -0.72 16 13 C 0.27 3.81 2.57 31.32 0.08 3.89 16 14 F -0.22 -4.36 17.04 44.97 0.77 -3.60 16 15 F -0.21 -3.42 17.04 44.97 0.77 -2.65 16 16 C -0.16 -2.24 5.88 31.32 0.18 -2.06 16 17 C 0.06 1.81 5.23 85.56 0.45 2.26 16 18 C 0.44 20.35 7.50 87.66 0.66 21.01 16 19 O -0.62 -33.65 13.89 -3.07 -0.04 -33.69 16 20 N -0.58 -28.81 5.29 -306.97 -1.62 -30.43 16 21 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 25 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.05 1.24 6.24 -2.39 -0.01 1.23 16 30 H 0.08 1.38 6.29 -2.39 -0.02 1.37 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 2.14 6.60 -2.39 -0.02 2.13 16 33 H 0.06 2.36 5.86 -2.39 -0.01 2.35 16 34 H 0.07 0.97 5.89 -2.39 -0.01 0.95 16 35 H 0.10 1.44 7.81 -2.39 -0.02 1.42 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.30 6.71 -2.39 -0.02 1.28 16 38 H 0.42 1.92 8.47 -92.71 -0.79 1.14 16 39 H 0.13 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.07 0.62 8.05 -2.39 -0.02 0.60 16 41 H 0.10 0.59 8.11 -2.39 -0.02 0.57 16 42 H 0.13 0.20 8.12 -2.39 -0.02 0.18 16 43 H 0.08 1.78 6.72 -2.39 -0.02 1.76 16 44 H 0.11 1.31 8.02 -2.39 -0.02 1.30 16 45 H 0.08 2.10 6.02 -2.39 -0.01 2.09 16 46 H 0.11 3.01 7.86 -2.39 -0.02 3.00 16 47 H 0.40 18.67 7.90 -92.70 -0.73 17.94 16 48 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -78.66 390.23 0.81 -77.86 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.50 Total: 27.19 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.71 Total: 17.38 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -7.88 Total: -110.35 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -0.09 Total: -50.68 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 1.53 Total: -6.25 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -78.66 0.81 -77.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691022209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.285 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds