Wall clock time and date at job start Wed Apr 1 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99905 * 2 1 4 4 H 1.08001 * 120.00166 * 179.03413 * 3 2 1 5 5 C 1.38810 * 119.99698 * 359.03345 * 3 2 1 6 6 N 1.31617 * 120.00454 * 32.87951 * 5 3 2 7 7 Si 1.86801 * 119.99896 * 212.88253 * 5 3 2 8 8 H 1.48497 * 109.47378 * 94.99860 * 7 5 3 9 9 H 1.48507 * 109.47043 * 214.99867 * 7 5 3 10 10 H 1.48499 * 109.46959 * 334.99555 * 7 5 3 11 11 C 1.46501 * 120.00467 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46999 * 270.00170 * 11 2 1 13 13 O 1.42895 * 109.47595 * 64.99917 * 12 11 2 14 14 C 1.42897 * 114.00454 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47029 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47230 * 65.00434 * 15 14 13 17 17 C 1.46498 * 119.99756 * 269.99936 * 16 15 14 18 18 C 1.34773 * 120.00120 * 89.99272 * 16 15 14 19 19 O 1.21565 * 120.00433 * 5.47403 * 18 16 15 20 20 C 1.47688 * 119.99821 * 185.46812 * 18 16 15 21 21 C 1.40191 * 120.40793 * 138.14925 * 20 18 16 22 22 N 1.31185 * 121.37202 * 180.25682 * 21 20 18 23 23 C 1.32937 * 121.84631 * 359.43204 * 22 21 20 24 24 N 1.36630 * 133.26672 * 180.20906 * 23 22 21 25 25 H 0.96996 * 125.34068 * 0.32871 * 24 23 22 26 26 N 1.39803 * 109.31681 * 180.32135 * 24 23 22 27 27 C 1.30203 * 110.13264 * 359.97438 * 26 24 23 28 28 C 1.41068 * 120.19999 * 0.55827 * 23 22 21 29 29 C 1.39509 * 120.41156 * 318.12848 * 20 18 16 30 30 H 1.09000 * 109.47252 * 275.27316 * 1 2 3 31 31 H 1.08994 * 109.47697 * 35.27938 * 1 2 3 32 32 H 1.09003 * 109.46891 * 155.27645 * 1 2 3 33 33 H 0.96998 * 120.00242 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47125 * 150.00113 * 11 2 1 35 35 H 1.08995 * 109.46879 * 30.00019 * 11 2 1 36 36 H 1.09006 * 109.47187 * 304.99523 * 12 11 2 37 37 H 1.09005 * 109.47066 * 184.99890 * 12 11 2 38 38 H 1.08998 * 109.46994 * 60.00260 * 14 13 12 39 39 H 1.09002 * 109.46892 * 299.99895 * 14 13 12 40 40 H 1.08991 * 109.47450 * 304.99728 * 15 14 13 41 41 H 1.09000 * 109.46648 * 184.99822 * 15 14 13 42 42 H 1.09006 * 109.47093 * 267.38789 * 17 16 15 43 43 H 1.09002 * 109.47469 * 27.39014 * 17 16 15 44 44 H 1.09003 * 109.47591 * 147.39132 * 17 16 15 45 45 H 1.07999 * 119.30991 * 359.97308 * 21 20 18 46 46 H 1.07996 * 126.20621 * 179.97438 * 27 26 24 47 47 H 1.08000 * 121.02564 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2295 1.1861 0.0158 5 6 1.4556 2.3880 -0.0203 6 7 0.2887 2.4844 0.5807 7 14 2.1780 3.8687 -0.9007 8 1 1.6332 3.9388 -2.2803 9 1 1.8189 5.1068 -0.1632 10 1 3.6561 3.7379 -0.9581 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 8 1.2062 -1.9926 2.0823 14 6 1.3326 -2.4160 3.4413 15 6 -0.0565 -2.6888 4.0217 16 7 -0.6661 -3.8202 3.3185 17 6 -1.4803 -3.5870 2.1232 18 6 -0.4776 -5.0756 3.7712 19 8 0.1135 -5.2625 4.8168 20 6 -0.9894 -6.2244 2.9968 21 6 -0.2115 -7.3807 2.8446 22 7 -0.6453 -8.4100 2.1568 23 6 -1.8434 -8.4141 1.5808 24 7 -2.5192 -9.3354 0.8316 25 1 -2.1876 -10.2144 0.5903 26 7 -3.7637 -8.8126 0.4677 27 6 -3.9035 -7.6113 0.9502 28 6 -2.6861 -7.2878 1.6879 29 6 -2.2532 -6.1724 2.4081 30 1 -0.3634 0.0944 1.0233 31 1 -0.3634 0.8388 -0.5935 32 1 -0.3633 -0.9335 -0.4298 33 1 -0.1961 3.3245 0.5668 34 1 3.1500 -1.1385 -0.5133 35 1 1.6085 -2.0285 -0.5129 36 1 2.9643 -0.9121 1.9820 37 1 3.0733 -2.6057 1.4450 38 1 1.8211 -1.6333 4.0216 39 1 1.9299 -3.3267 3.4840 40 1 -0.6819 -1.8047 3.8984 41 1 0.0329 -2.9255 5.0819 42 1 -2.5273 -3.4891 2.4102 43 1 -1.1510 -2.6713 1.6321 44 1 -1.3686 -4.4272 1.4378 45 1 0.7671 -7.4231 3.2994 46 1 -4.7638 -6.9703 0.8263 47 1 -2.8777 -5.2969 2.5069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691598397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:37 Heat of formation + Delta-G solvation = 66.738249 kcal Electronic energy + Delta-G solvation = -30444.938541 eV Core-core repulsion = 26245.445405 eV Total energy + Delta-G solvation = -4199.493136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -42.03053 -40.17593 -38.17961 -37.49423 -35.80477 -35.10488 -33.70742 -31.71773 -31.22070 -30.74584 -29.64589 -28.04132 -26.71477 -25.78786 -24.44657 -24.34109 -23.02562 -22.67495 -22.08248 -20.36326 -19.79493 -18.85117 -17.65826 -17.13040 -16.77819 -16.32444 -16.23940 -15.82249 -15.68945 -15.47922 -15.22654 -14.74891 -14.46918 -14.18205 -13.89238 -13.83058 -13.41626 -13.38814 -13.06684 -13.02248 -12.82374 -12.36964 -12.31423 -12.00606 -11.67667 -11.54770 -11.48893 -11.12815 -11.03133 -10.91173 -10.70641 -10.51701 -10.33374 -10.12622 -10.01200 -9.79582 -9.74218 -9.52444 -9.02295 -8.90777 -8.69150 -8.24939 -6.91240 -5.81667 -2.96355 0.31023 0.53988 1.93033 1.97710 2.51040 2.87229 3.37806 3.41991 3.51320 3.51608 3.83760 3.86893 4.13059 4.18979 4.30722 4.39428 4.55780 4.74100 4.95539 5.10173 5.16341 5.21720 5.31553 5.33444 5.45346 5.51854 5.52744 5.62753 5.66921 5.72147 5.87636 5.90794 6.00044 6.05680 6.14243 6.19586 6.43442 6.51393 6.60911 6.72908 6.83136 6.85851 7.23982 7.46963 7.53413 7.70042 7.80266 7.88635 7.99040 8.33228 9.23494 9.92699 10.38770 11.27639 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.002333 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.209170 B =11997.204857 C =12744.256193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.599 5.599 3 C -0.260 4.260 4 H 0.074 0.926 5 C 0.006 3.994 6 N -0.888 5.888 7 Si 0.879 3.121 8 H -0.289 1.289 9 H -0.295 1.295 10 H -0.281 1.281 11 C 0.156 3.844 12 C 0.041 3.959 13 O -0.368 6.368 14 C 0.047 3.953 15 C 0.120 3.880 16 N -0.595 5.595 17 C 0.071 3.929 18 C 0.568 3.432 19 O -0.539 6.539 20 C -0.220 4.220 21 C 0.225 3.775 22 N -0.507 5.507 23 C 0.330 3.670 24 N -0.493 5.493 25 H 0.445 0.555 26 N -0.237 5.237 27 C 0.099 3.901 28 C -0.236 4.236 29 C 0.042 3.958 30 H 0.017 0.983 31 H 0.054 0.946 32 H -0.004 1.004 33 H 0.252 0.748 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.175 0.825 46 H 0.207 0.793 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.640 -20.339 3.784 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.322 5.322 3 C -0.388 4.388 4 H 0.092 0.908 5 C -0.193 4.193 6 N -0.532 5.532 7 Si 0.709 3.291 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.206 1.206 11 C 0.027 3.973 12 C -0.038 4.038 13 O -0.287 6.287 14 C -0.032 4.032 15 C -0.002 4.002 16 N -0.327 5.327 17 C -0.072 4.072 18 C 0.356 3.644 19 O -0.417 6.417 20 C -0.228 4.228 21 C 0.055 3.945 22 N -0.221 5.221 23 C 0.089 3.911 24 N -0.211 5.211 25 H 0.291 0.709 26 N -0.049 5.049 27 C -0.100 4.100 28 C -0.246 4.246 29 C 0.013 3.987 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.192 0.808 46 H 0.223 0.777 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.730 -21.988 3.396 23.553 hybrid contribution 0.723 1.763 0.141 1.911 sum -7.007 -20.225 3.536 21.694 Atomic orbital electron populations 1.20858 0.82227 0.95753 0.98955 1.44055 1.02210 1.00413 1.85485 1.19192 0.90848 0.83506 1.45246 0.90767 1.24643 0.96831 0.97112 1.00696 1.70328 1.16621 1.25349 1.40902 0.86589 0.78743 0.82865 0.80904 1.21663 1.22203 1.20611 1.20813 0.96530 0.88456 0.91459 1.23522 0.85343 0.96918 0.98031 1.87921 1.30291 1.87289 1.23226 1.22792 0.96692 0.98167 0.85510 1.21618 0.93694 0.88359 0.96548 1.47649 1.50575 1.05701 1.28753 1.22190 0.93867 1.04405 0.86749 1.17922 0.79453 0.82433 0.84617 1.90790 1.42901 1.85112 1.22853 1.20642 0.97553 0.97954 1.06628 1.22789 0.98413 0.84850 0.88406 1.66809 1.12664 1.29713 1.12924 1.19221 0.90417 0.89241 0.92245 1.45837 1.12372 1.16654 1.46191 0.70888 1.76741 0.97647 1.11560 1.18999 1.25190 0.97299 0.93119 0.94426 1.20438 0.97748 0.97280 1.09164 1.21518 0.93629 0.95898 0.87651 0.96421 0.92751 0.98500 0.93844 0.92175 0.93734 0.93576 0.95703 0.92710 0.94006 0.88953 0.88536 0.92558 0.88558 0.91208 0.80801 0.77672 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.01 8.80 59.84 0.53 4.54 16 2 N -0.60 -14.69 2.90 -181.13 -0.52 -15.21 16 3 C -0.26 -7.02 9.66 -15.06 -0.15 -7.16 16 4 H 0.07 1.97 8.01 -52.49 -0.42 1.55 16 5 C 0.01 0.15 4.84 -17.43 -0.08 0.07 16 6 N -0.89 -25.40 10.80 55.49 0.60 -24.80 16 7 Si 0.88 21.42 29.66 -169.99 -5.04 16.38 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.16 3.09 6.11 -4.04 -0.02 3.06 16 12 C 0.04 0.75 6.28 37.16 0.23 0.98 16 13 O -0.37 -6.50 8.77 -35.23 -0.31 -6.81 16 14 C 0.05 0.69 6.28 37.16 0.23 0.92 16 15 C 0.12 1.53 5.84 -4.04 -0.02 1.50 16 16 N -0.60 -7.08 2.84 -182.76 -0.52 -7.60 16 17 C 0.07 0.71 8.73 59.85 0.52 1.23 16 18 C 0.57 7.13 7.33 -12.40 -0.09 7.03 16 19 O -0.54 -8.29 16.51 5.31 0.09 -8.20 16 20 C -0.22 -2.33 5.17 -104.83 -0.54 -2.87 16 21 C 0.23 2.40 10.79 -17.10 -0.18 2.22 16 22 N -0.51 -5.63 10.37 -12.02 -0.12 -5.76 16 23 C 0.33 3.41 8.47 -156.08 -1.32 2.09 16 24 N -0.49 -4.31 7.33 31.15 0.23 -4.09 16 25 H 0.45 2.82 8.96 -182.83 -1.64 1.18 16 26 N -0.24 -2.07 12.54 31.87 0.40 -1.67 16 27 C 0.10 0.70 12.30 -15.14 -0.19 0.52 16 28 C -0.24 -2.12 6.36 -105.20 -0.67 -2.79 16 29 C 0.04 0.35 7.71 -38.58 -0.30 0.06 16 30 H 0.02 0.45 7.98 -51.93 -0.41 0.04 16 31 H 0.05 1.44 6.28 -51.93 -0.33 1.11 16 32 H 0.00 -0.08 7.83 -51.93 -0.41 -0.48 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 35 H 0.04 0.82 7.86 -51.93 -0.41 0.42 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.17 8.07 -51.93 -0.42 0.75 16 41 H 0.10 1.18 7.35 -51.93 -0.38 0.80 16 42 H 0.06 0.42 7.10 -51.93 -0.37 0.05 16 43 H 0.10 1.21 7.17 -51.93 -0.37 0.84 16 44 H 0.07 0.65 5.74 -51.93 -0.30 0.35 16 45 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.21 0.61 8.06 -52.49 -0.42 0.18 16 47 H 0.15 0.94 5.71 -52.49 -0.30 0.64 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -34.12 390.81 -9.21 -43.33 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -7.84 Total: -2.86 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -2.06 Total: 11.39 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.06 Total: -59.12 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.22 Total: -15.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.38 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.12 -9.21 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691598397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.070 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds