Wall clock time and date at job start Wed Apr 1 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 119.99905 * 2 1 4 4 H 1.08001 * 120.00166 * 179.03413 * 3 2 1 5 5 C 1.38810 * 119.99698 * 359.03345 * 3 2 1 6 6 N 1.31617 * 120.00454 * 32.87951 * 5 3 2 7 7 Si 1.86801 * 119.99896 * 212.88253 * 5 3 2 8 8 H 1.48497 * 109.47378 * 94.99860 * 7 5 3 9 9 H 1.48507 * 109.47043 * 214.99867 * 7 5 3 10 10 H 1.48499 * 109.46959 * 334.99555 * 7 5 3 11 11 C 1.46501 * 120.00467 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.46999 * 270.00170 * 11 2 1 13 13 O 1.42895 * 109.47595 * 64.99917 * 12 11 2 14 14 C 1.42897 * 114.00454 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47029 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47230 * 65.00434 * 15 14 13 17 17 C 1.46498 * 119.99756 * 269.99936 * 16 15 14 18 18 C 1.34773 * 120.00120 * 89.99272 * 16 15 14 19 19 O 1.21565 * 120.00433 * 5.47403 * 18 16 15 20 20 C 1.47688 * 119.99821 * 185.46812 * 18 16 15 21 21 C 1.40191 * 120.40793 * 138.14925 * 20 18 16 22 22 N 1.31185 * 121.37202 * 180.25682 * 21 20 18 23 23 C 1.32937 * 121.84631 * 359.43204 * 22 21 20 24 24 N 1.36630 * 133.26672 * 180.20906 * 23 22 21 25 25 H 0.96996 * 125.34068 * 0.32871 * 24 23 22 26 26 N 1.39803 * 109.31681 * 180.32135 * 24 23 22 27 27 C 1.30203 * 110.13264 * 359.97438 * 26 24 23 28 28 C 1.41068 * 120.19999 * 0.55827 * 23 22 21 29 29 C 1.39509 * 120.41156 * 318.12848 * 20 18 16 30 30 H 1.09000 * 109.47252 * 275.27316 * 1 2 3 31 31 H 1.08994 * 109.47697 * 35.27938 * 1 2 3 32 32 H 1.09003 * 109.46891 * 155.27645 * 1 2 3 33 33 H 0.96998 * 120.00242 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47125 * 150.00113 * 11 2 1 35 35 H 1.08995 * 109.46879 * 30.00019 * 11 2 1 36 36 H 1.09006 * 109.47187 * 304.99523 * 12 11 2 37 37 H 1.09005 * 109.47066 * 184.99890 * 12 11 2 38 38 H 1.08998 * 109.46994 * 60.00260 * 14 13 12 39 39 H 1.09002 * 109.46892 * 299.99895 * 14 13 12 40 40 H 1.08991 * 109.47450 * 304.99728 * 15 14 13 41 41 H 1.09000 * 109.46648 * 184.99822 * 15 14 13 42 42 H 1.09006 * 109.47093 * 267.38789 * 17 16 15 43 43 H 1.09002 * 109.47469 * 27.39014 * 17 16 15 44 44 H 1.09003 * 109.47591 * 147.39132 * 17 16 15 45 45 H 1.07999 * 119.30991 * 359.97308 * 21 20 18 46 46 H 1.07996 * 126.20621 * 179.97438 * 27 26 24 47 47 H 1.08000 * 121.02564 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2295 1.1861 0.0158 5 6 1.4556 2.3880 -0.0203 6 7 0.2887 2.4844 0.5807 7 14 2.1780 3.8687 -0.9007 8 1 1.6332 3.9388 -2.2803 9 1 1.8189 5.1068 -0.1632 10 1 3.6561 3.7379 -0.9581 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 8 1.2062 -1.9926 2.0823 14 6 1.3326 -2.4160 3.4413 15 6 -0.0565 -2.6888 4.0217 16 7 -0.6661 -3.8202 3.3185 17 6 -1.4803 -3.5870 2.1232 18 6 -0.4776 -5.0756 3.7712 19 8 0.1135 -5.2625 4.8168 20 6 -0.9894 -6.2244 2.9968 21 6 -0.2115 -7.3807 2.8446 22 7 -0.6453 -8.4100 2.1568 23 6 -1.8434 -8.4141 1.5808 24 7 -2.5192 -9.3354 0.8316 25 1 -2.1876 -10.2144 0.5903 26 7 -3.7637 -8.8126 0.4677 27 6 -3.9035 -7.6113 0.9502 28 6 -2.6861 -7.2878 1.6879 29 6 -2.2532 -6.1724 2.4081 30 1 -0.3634 0.0944 1.0233 31 1 -0.3634 0.8388 -0.5935 32 1 -0.3633 -0.9335 -0.4298 33 1 -0.1961 3.3245 0.5668 34 1 3.1500 -1.1385 -0.5133 35 1 1.6085 -2.0285 -0.5129 36 1 2.9643 -0.9121 1.9820 37 1 3.0733 -2.6057 1.4450 38 1 1.8211 -1.6333 4.0216 39 1 1.9299 -3.3267 3.4840 40 1 -0.6819 -1.8047 3.8984 41 1 0.0329 -2.9255 5.0819 42 1 -2.5273 -3.4891 2.4102 43 1 -1.1510 -2.6713 1.6321 44 1 -1.3686 -4.4272 1.4378 45 1 0.7671 -7.4231 3.2994 46 1 -4.7638 -6.9703 0.8263 47 1 -2.8777 -5.2969 2.5069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691598397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:32 Heat of formation + Delta-G solvation = 44.374952 kcal Electronic energy + Delta-G solvation = -30445.908286 eV Core-core repulsion = 26245.445405 eV Total energy + Delta-G solvation = -4200.462881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.71743 -41.09193 -39.14291 -38.68024 -37.24830 -36.47540 -34.48578 -33.47941 -32.09941 -31.52562 -30.77552 -29.52857 -27.79680 -27.61741 -25.29774 -25.14232 -24.73772 -23.57409 -22.76816 -22.11163 -20.69286 -19.54954 -18.76811 -18.47341 -17.95133 -17.36443 -17.29293 -16.98560 -16.74941 -16.51278 -16.31240 -16.21732 -15.45690 -15.30577 -15.18771 -14.95504 -14.73915 -14.55049 -14.15561 -14.06670 -13.74811 -13.67109 -13.49336 -13.20711 -13.04604 -12.91200 -12.67034 -12.59675 -12.43444 -12.32667 -12.23734 -11.94287 -11.81278 -11.75240 -11.70119 -11.23136 -10.61614 -10.40699 -10.29025 -10.22175 -9.73822 -9.55030 -8.88957 -7.88403 -5.03550 -0.35598 -0.22840 1.30110 1.38712 1.48445 1.53297 1.58613 1.59768 1.97055 2.56582 2.60810 2.91467 3.15230 3.24537 3.25661 3.45182 3.56638 3.71252 3.78164 4.02986 4.14476 4.18848 4.31732 4.35317 4.44033 4.49207 4.54679 4.56090 4.63868 4.65570 4.70366 4.82631 4.87028 4.95438 5.00077 5.09144 5.10976 5.18359 5.33857 5.47985 5.54937 5.67363 5.84188 5.99090 6.22333 6.30625 6.31725 6.46705 6.76210 7.03888 7.19358 7.97169 8.38308 9.20248 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.002333 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.209170 B =11997.204857 C =12744.256193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.614 5.614 3 C -0.264 4.264 4 H 0.075 0.925 5 C -0.046 4.046 6 N -0.918 5.918 7 Si 0.942 3.058 8 H -0.291 1.291 9 H -0.301 1.301 10 H -0.272 1.272 11 C 0.151 3.849 12 C 0.050 3.950 13 O -0.381 6.381 14 C 0.048 3.952 15 C 0.125 3.875 16 N -0.595 5.595 17 C 0.071 3.929 18 C 0.572 3.428 19 O -0.574 6.574 20 C -0.235 4.235 21 C 0.218 3.782 22 N -0.525 5.525 23 C 0.312 3.688 24 N -0.494 5.494 25 H 0.452 0.548 26 N -0.257 5.257 27 C 0.116 3.884 28 C -0.243 4.243 29 C 0.059 3.941 30 H -0.006 1.006 31 H 0.025 0.975 32 H 0.027 0.973 33 H 0.248 0.752 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.177 0.823 46 H 0.249 0.751 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 -20.985 2.927 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.337 5.337 3 C -0.394 4.394 4 H 0.093 0.907 5 C -0.242 4.242 6 N -0.565 5.565 7 Si 0.771 3.229 8 H -0.218 1.218 9 H -0.228 1.228 10 H -0.197 1.197 11 C 0.025 3.975 12 C -0.029 4.029 13 O -0.300 6.300 14 C -0.030 4.030 15 C 0.002 3.998 16 N -0.325 5.325 17 C -0.071 4.071 18 C 0.361 3.639 19 O -0.454 6.454 20 C -0.242 4.242 21 C 0.048 3.952 22 N -0.240 5.240 23 C 0.070 3.930 24 N -0.212 5.212 25 H 0.299 0.701 26 N -0.070 5.070 27 C -0.083 4.083 28 C -0.253 4.253 29 C 0.031 3.969 30 H 0.013 0.987 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.194 0.806 46 H 0.264 0.736 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -8.634 -22.672 2.507 24.390 hybrid contribution 0.999 1.867 0.407 2.157 sum -7.635 -20.805 2.914 22.353 Atomic orbital electron populations 1.20556 0.82284 0.95963 0.97164 1.44294 1.02524 1.01369 1.85561 1.19484 0.91122 0.84659 1.44092 0.90697 1.25292 0.97674 0.99628 1.01623 1.70434 1.18010 1.25705 1.42318 0.85612 0.78390 0.79648 0.79217 1.21800 1.22821 1.19653 1.21018 0.96807 0.86964 0.92723 1.23260 0.85794 0.97344 0.96524 1.87899 1.30089 1.87429 1.24604 1.22881 0.98083 0.97904 0.84146 1.21518 0.92671 0.88836 0.96770 1.47705 1.50484 1.05283 1.29057 1.22299 0.95171 1.03542 0.86111 1.18133 0.78783 0.82836 0.84193 1.90769 1.44610 1.85588 1.24458 1.20476 0.98707 0.97241 1.07788 1.22877 0.98784 0.85006 0.88495 1.66791 1.13493 1.30020 1.13680 1.19531 0.90596 0.90336 0.92504 1.45940 1.12391 1.16903 1.45920 0.70146 1.76758 0.97647 1.12559 1.20008 1.25903 0.97458 0.92658 0.92327 1.20676 0.98361 0.96875 1.09437 1.21746 0.92771 0.96493 0.85935 0.98735 0.95661 0.95461 0.94320 0.91259 0.91946 0.95963 0.92842 0.93122 0.93881 0.88883 0.88065 0.89337 0.90945 0.90212 0.80599 0.73551 0.80101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 8.85 8.80 127.77 1.12 9.97 16 2 N -0.61 -29.69 2.90 -726.96 -2.11 -31.80 16 3 C -0.26 -14.19 9.66 84.03 0.81 -13.38 16 4 H 0.08 3.93 8.01 -2.91 -0.02 3.91 16 5 C -0.05 -2.56 4.84 84.86 0.41 -2.15 16 6 N -0.92 -53.20 10.80 21.65 0.23 -52.97 16 7 Si 0.94 44.29 29.66 68.60 2.03 46.32 16 8 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 C 0.15 5.75 6.11 86.38 0.53 6.27 16 12 C 0.05 1.75 6.28 71.98 0.45 2.20 16 13 O -0.38 -13.10 8.77 -148.98 -1.31 -14.40 16 14 C 0.05 1.38 6.28 71.98 0.45 1.83 16 15 C 0.12 3.08 5.84 86.38 0.50 3.59 16 16 N -0.59 -13.28 2.84 -850.39 -2.41 -15.69 16 17 C 0.07 1.25 8.73 127.77 1.12 2.36 16 18 C 0.57 13.74 7.33 86.74 0.64 14.38 16 19 O -0.57 -17.54 16.51 -3.92 -0.06 -17.60 16 20 C -0.23 -4.65 5.17 -20.00 -0.10 -4.75 16 21 C 0.22 4.57 10.79 85.26 0.92 5.49 16 22 N -0.52 -11.44 10.37 -191.96 -1.99 -13.43 16 23 C 0.31 6.08 8.47 134.17 1.14 7.21 16 24 N -0.49 -8.07 7.33 -55.36 -0.41 -8.48 16 25 H 0.45 5.48 8.96 -213.52 -1.91 3.57 16 26 N -0.26 -3.95 12.54 -53.08 -0.67 -4.61 16 27 C 0.12 1.26 12.30 86.94 1.07 2.33 16 28 C -0.24 -3.76 6.36 -20.24 -0.13 -3.88 16 29 C 0.06 0.84 7.71 22.92 0.18 1.02 16 30 H -0.01 -0.30 7.98 -2.39 -0.02 -0.31 16 31 H 0.02 1.33 6.28 -2.39 -0.02 1.32 16 32 H 0.03 1.10 7.83 -2.39 -0.02 1.08 16 33 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 34 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 35 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 36 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 41 H 0.10 2.42 7.35 -2.39 -0.02 2.40 16 42 H 0.09 1.00 7.10 -2.38 -0.02 0.98 16 43 H 0.07 1.69 7.17 -2.39 -0.02 1.68 16 44 H 0.08 1.25 5.74 -2.39 -0.01 1.24 16 45 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 46 H 0.25 0.27 8.06 -2.91 -0.02 0.25 16 47 H 0.18 1.48 5.71 -2.91 -0.02 1.47 16 Total: -1.00 -73.66 390.81 1.52 -72.14 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -0.90 Total: 8.02 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 9.11 Total: 32.49 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -7.35 Total: -126.97 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.37 Total: -32.00 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -73.66 1.52 -72.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691598397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.520 kcal (2) G-P(sol) polarization free energy of solvation -73.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds