Wall clock time and date at job start Wed Apr 1 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99867 * 2 1 4 4 H 1.08002 * 120.00420 * 203.04677 * 3 2 1 5 5 C 1.38817 * 119.99789 * 23.05018 * 3 2 1 6 6 N 1.31613 * 119.99992 * 12.92259 * 5 3 2 7 7 Si 1.86801 * 119.99765 * 192.92745 * 5 3 2 8 8 H 1.48503 * 109.47057 * 89.99553 * 7 5 3 9 9 H 1.48493 * 109.47094 * 209.99858 * 7 5 3 10 10 H 1.48496 * 109.47075 * 329.99822 * 7 5 3 11 11 C 1.46500 * 120.00147 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47437 * 89.99783 * 11 2 1 13 13 C 1.52998 * 109.47200 * 179.97438 * 12 11 2 14 14 C 1.50695 * 109.47063 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00110 * 0.02562 * 14 13 12 16 16 N 1.34784 * 120.00039 * 180.02562 * 14 13 12 17 17 C 1.46922 * 120.63193 * 180.02562 * 16 14 13 18 18 C 1.53196 * 108.89278 * 126.45944 * 17 16 14 19 19 C 1.53039 * 109.31029 * 54.56458 * 18 17 16 20 20 N 1.46505 * 109.45511 * 178.62768 * 19 18 17 21 21 C 1.34776 * 119.99508 * 204.99833 * 20 19 18 22 22 O 1.21279 * 120.00189 * 359.97438 * 21 20 19 23 23 C 1.50707 * 119.99877 * 180.02562 * 21 20 19 24 24 F 1.39898 * 109.47196 * 185.00223 * 23 21 20 25 25 F 1.39901 * 109.46658 * 305.00265 * 23 21 20 26 26 C 1.53038 * 109.54043 * 298.62980 * 19 18 17 27 27 C 1.46964 * 120.64946 * 359.81349 * 16 14 13 28 28 H 1.09006 * 109.46934 * 275.12134 * 1 2 3 29 29 H 1.08998 * 109.47200 * 35.12131 * 1 2 3 30 30 H 1.08996 * 109.46982 * 155.12154 * 1 2 3 31 31 H 0.97010 * 119.99545 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46722 * 329.99086 * 11 2 1 33 33 H 1.09007 * 109.46728 * 210.00089 * 11 2 1 34 34 H 1.09000 * 109.46833 * 60.00007 * 12 11 2 35 35 H 1.08999 * 109.46635 * 300.00032 * 12 11 2 36 36 H 1.09009 * 109.46915 * 59.99751 * 13 12 11 37 37 H 1.09001 * 109.47232 * 300.00373 * 13 12 11 38 38 H 1.08997 * 109.58705 * 6.60046 * 17 16 14 39 39 H 1.09000 * 109.58235 * 246.31745 * 17 16 14 40 40 H 1.09003 * 109.49142 * 174.51180 * 18 17 16 41 41 H 1.08995 * 109.49404 * 294.57591 * 18 17 16 42 42 H 1.09003 * 109.46308 * 58.65283 * 19 18 17 43 43 H 0.96998 * 120.00266 * 24.99830 * 20 19 18 44 44 H 1.09000 * 109.47034 * 64.99885 * 23 21 20 45 45 H 1.08991 * 109.50032 * 181.31919 * 26 19 18 46 46 H 1.09001 * 109.49771 * 301.42166 * 26 19 18 47 47 H 1.09000 * 109.46446 * 113.75538 * 27 16 14 48 48 H 1.09004 * 109.71433 * 353.46968 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5386 2.3401 0.4707 6 7 0.4118 2.2596 1.1459 7 14 2.3158 4.0074 0.1457 8 1 1.7987 4.5534 -1.1348 9 1 1.9758 4.9363 1.2532 10 1 3.7907 3.8578 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2181 -3.0345 -1.4437 14 6 3.4687 -3.4692 -2.8647 15 8 3.0743 -2.7866 -3.7862 16 7 4.1312 -4.6168 -3.1114 17 6 4.3837 -5.0536 -4.4913 18 6 5.8829 -5.3189 -4.6613 19 6 6.3452 -6.3125 -3.5931 20 7 7.7718 -6.5936 -3.7730 21 6 8.2912 -7.7546 -3.3271 22 8 7.5778 -8.5663 -2.7766 23 6 9.7587 -8.0437 -3.5116 24 9 10.0364 -9.3436 -3.0755 25 9 10.0906 -7.9251 -4.8655 26 6 6.1152 -5.7140 -2.2035 27 6 4.6191 -5.4529 -2.0057 28 1 -0.3633 0.0917 1.0236 29 1 -0.3633 0.8405 -0.5912 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0154 3.0663 1.4745 32 1 1.6085 -2.0285 0.5131 33 1 3.1500 -1.1385 0.5134 34 1 3.0416 -0.9499 -1.9567 35 1 1.5001 -1.8399 -1.9570 36 1 2.6294 -3.7946 -0.9300 37 1 4.1705 -2.9039 -0.9299 38 1 4.0697 -4.2734 -5.1848 39 1 3.8256 -5.9679 -4.6930 40 1 6.0685 -5.7361 -5.6510 41 1 6.4324 -4.3840 -4.5516 42 1 5.7778 -7.2383 -3.6882 43 1 8.3424 -5.9443 -4.2130 44 1 10.3450 -7.3323 -2.9301 45 1 6.4662 -6.4124 -1.4439 46 1 6.6626 -4.7755 -2.1163 47 1 4.0804 -6.4005 -2.0018 48 1 4.4602 -4.9384 -1.0579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699686261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:43 Heat of formation + Delta-G solvation = -153.899779 kcal Electronic energy + Delta-G solvation = -30382.254289 eV Core-core repulsion = 25722.504384 eV Total energy + Delta-G solvation = -4659.749905 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -49.75496 -47.78040 -40.83524 -39.90283 -37.78032 -35.88396 -35.20973 -33.20254 -32.07899 -31.58302 -30.50224 -28.68764 -26.80586 -25.74419 -24.90629 -23.86823 -22.53475 -21.55335 -21.29163 -20.16554 -19.35891 -18.78323 -18.35391 -18.12196 -17.26405 -16.65025 -16.45422 -16.03833 -15.82979 -15.56980 -15.32094 -14.82462 -14.65493 -14.56730 -14.32950 -14.10644 -14.06534 -13.83794 -13.67378 -13.36912 -13.08192 -12.92166 -12.76134 -12.61314 -12.44329 -12.40956 -11.81029 -11.64430 -11.51380 -11.27908 -11.17828 -10.86444 -10.74705 -10.63925 -10.58377 -10.39324 -10.11117 -9.90324 -9.81048 -9.70234 -9.65916 -8.90730 -8.48151 -6.66406 -5.65574 -3.12107 1.50874 1.91710 2.66586 2.78597 3.18717 3.42216 3.43563 3.48299 3.49352 3.91763 4.01819 4.10106 4.22753 4.45712 4.54973 4.55445 4.65678 4.80543 4.92069 5.02759 5.18780 5.24080 5.29678 5.36613 5.39349 5.48329 5.50297 5.55294 5.60619 5.70865 5.74944 6.05420 6.13521 6.27949 6.40995 6.52576 6.53924 6.83107 6.89342 7.12132 7.20311 7.23809 7.46304 7.79217 7.86908 8.18526 8.47293 9.30944 9.95077 10.44211 11.39145 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.001710 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.344350 B =16373.689839 C =16721.745717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.251 4.251 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.153 3.847 12 C -0.124 4.124 13 C -0.136 4.136 14 C 0.517 3.483 15 O -0.532 6.532 16 N -0.624 5.624 17 C 0.115 3.885 18 C -0.141 4.141 19 C 0.144 3.856 20 N -0.709 5.709 21 C 0.473 3.527 22 O -0.498 6.498 23 C 0.257 3.743 24 F -0.175 7.175 25 F -0.188 7.188 26 C -0.147 4.147 27 C 0.111 3.889 28 H 0.030 0.970 29 H 0.039 0.961 30 H -0.003 1.003 31 H 0.251 0.749 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.407 0.593 44 H 0.139 0.861 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.129 -22.689 -10.116 30.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.380 4.380 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.165 4.165 13 C -0.176 4.176 14 C 0.306 3.694 15 O -0.407 6.407 16 N -0.359 5.359 17 C -0.008 4.008 18 C -0.180 4.180 19 C 0.040 3.960 20 N -0.361 5.361 21 C 0.254 3.746 22 O -0.371 6.371 23 C 0.200 3.800 24 F -0.156 7.156 25 F -0.170 7.170 26 C -0.186 4.186 27 C -0.013 4.013 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.242 0.758 44 H 0.156 0.844 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.260 -22.782 -10.135 30.326 hybrid contribution 0.869 1.061 -0.457 1.446 sum 18.129 -21.721 -10.591 30.210 Atomic orbital electron populations 1.20776 0.82728 0.95363 0.99303 1.43866 1.01848 1.00733 1.86158 1.19186 0.98205 0.85722 1.34916 0.91534 1.25024 0.97993 0.98504 0.98393 1.70074 1.19516 1.27038 1.38827 0.86257 0.78703 0.84246 0.77358 1.21542 1.21813 1.20547 1.20728 0.95894 0.88393 0.92460 1.22102 0.99709 0.93268 1.01373 1.21751 1.02704 1.00837 0.92342 1.21130 0.76405 0.79206 0.92629 1.90705 1.50184 1.53018 1.46782 1.48265 1.57702 1.23438 1.06538 1.21445 0.93743 1.01211 0.84431 1.22223 0.97510 0.99489 0.98789 1.21135 0.79904 0.99538 0.95381 1.46032 1.11315 1.19185 1.59589 1.21087 0.89904 0.83021 0.80577 1.90842 1.59746 1.46078 1.40480 1.21674 0.94748 0.84047 0.79518 1.93078 1.94087 1.39326 1.89116 1.93069 1.93535 1.96042 1.34305 1.22339 0.97194 1.02054 0.97023 1.21682 0.93141 0.95723 0.90718 0.95154 0.94225 0.98441 0.93852 0.94791 0.93689 0.91577 0.92181 0.89291 0.89213 0.88212 0.91340 0.89825 0.90468 0.88675 0.75752 0.84442 0.89906 0.90685 0.90950 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 8.98 59.85 0.54 4.70 16 2 N -0.60 -15.62 2.92 -181.11 -0.53 -16.15 16 3 C -0.25 -7.06 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 -0.04 5.10 -17.43 -0.09 -0.13 16 6 N -0.91 -27.14 10.71 55.49 0.59 -26.55 16 7 Si 0.90 22.34 29.57 -169.99 -5.03 17.31 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.15 3.10 5.64 -4.04 -0.02 3.08 16 12 C -0.12 -2.23 4.83 -26.73 -0.13 -2.36 16 13 C -0.14 -1.74 4.05 -27.89 -0.11 -1.85 16 14 C 0.52 6.98 7.70 -10.98 -0.08 6.90 16 15 O -0.53 -9.50 15.39 5.56 0.09 -9.42 16 16 N -0.62 -5.97 2.98 -172.76 -0.51 -6.49 16 17 C 0.12 0.93 6.43 -3.71 -0.02 0.90 16 18 C -0.14 -0.77 5.55 -26.61 -0.15 -0.92 16 19 C 0.14 0.81 2.42 -67.89 -0.16 0.65 16 20 N -0.71 -3.16 5.08 -53.76 -0.27 -3.44 16 21 C 0.47 3.12 7.60 -10.98 -0.08 3.03 16 22 O -0.50 -5.37 16.28 5.56 0.09 -5.28 16 23 C 0.26 1.18 5.72 36.01 0.21 1.39 16 24 F -0.18 -1.38 16.95 2.25 0.04 -1.34 16 25 F -0.19 -1.03 17.32 2.25 0.04 -0.99 16 26 C -0.15 -0.87 5.65 -26.63 -0.15 -1.02 16 27 C 0.11 0.76 6.33 -3.71 -0.02 0.74 16 28 H 0.03 0.83 7.34 -51.93 -0.38 0.44 16 29 H 0.04 1.09 7.34 -51.93 -0.38 0.70 16 30 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 33 H 0.04 0.89 8.04 -51.92 -0.42 0.47 16 34 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 35 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.09 0.96 7.95 -51.92 -0.41 0.54 16 37 H 0.09 0.98 7.69 -51.93 -0.40 0.58 16 38 H 0.10 1.00 7.01 -51.93 -0.36 0.64 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.67 7.58 -51.93 -0.39 0.28 16 43 H 0.41 0.80 8.60 -40.82 -0.35 0.45 16 44 H 0.14 0.04 8.14 -51.93 -0.42 -0.38 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.10 0.61 5.95 -51.93 -0.31 0.30 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -36.84 397.14 -7.54 -44.38 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -7.59 Total: -5.95 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -0.43 Total: 7.92 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.72 Total: -52.61 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.18 Total: -14.70 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.84 -7.54 -44.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699686261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.524 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds