Wall clock time and date at job start Wed Apr 1 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36937 * 119.99867 * 2 1 4 4 H 1.08002 * 120.00420 * 203.04677 * 3 2 1 5 5 C 1.38817 * 119.99789 * 23.05018 * 3 2 1 6 6 N 1.31613 * 119.99992 * 12.92259 * 5 3 2 7 7 Si 1.86801 * 119.99765 * 192.92745 * 5 3 2 8 8 H 1.48503 * 109.47057 * 89.99553 * 7 5 3 9 9 H 1.48493 * 109.47094 * 209.99858 * 7 5 3 10 10 H 1.48496 * 109.47075 * 329.99822 * 7 5 3 11 11 C 1.46500 * 120.00147 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47437 * 89.99783 * 11 2 1 13 13 C 1.52998 * 109.47200 * 179.97438 * 12 11 2 14 14 C 1.50695 * 109.47063 * 179.97438 * 13 12 11 15 15 O 1.21277 * 120.00110 * 0.02562 * 14 13 12 16 16 N 1.34784 * 120.00039 * 180.02562 * 14 13 12 17 17 C 1.46922 * 120.63193 * 180.02562 * 16 14 13 18 18 C 1.53196 * 108.89278 * 126.45944 * 17 16 14 19 19 C 1.53039 * 109.31029 * 54.56458 * 18 17 16 20 20 N 1.46505 * 109.45511 * 178.62768 * 19 18 17 21 21 C 1.34776 * 119.99508 * 204.99833 * 20 19 18 22 22 O 1.21279 * 120.00189 * 359.97438 * 21 20 19 23 23 C 1.50707 * 119.99877 * 180.02562 * 21 20 19 24 24 F 1.39898 * 109.47196 * 185.00223 * 23 21 20 25 25 F 1.39901 * 109.46658 * 305.00265 * 23 21 20 26 26 C 1.53038 * 109.54043 * 298.62980 * 19 18 17 27 27 C 1.46964 * 120.64946 * 359.81349 * 16 14 13 28 28 H 1.09006 * 109.46934 * 275.12134 * 1 2 3 29 29 H 1.08998 * 109.47200 * 35.12131 * 1 2 3 30 30 H 1.08996 * 109.46982 * 155.12154 * 1 2 3 31 31 H 0.97010 * 119.99545 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.46722 * 329.99086 * 11 2 1 33 33 H 1.09007 * 109.46728 * 210.00089 * 11 2 1 34 34 H 1.09000 * 109.46833 * 60.00007 * 12 11 2 35 35 H 1.08999 * 109.46635 * 300.00032 * 12 11 2 36 36 H 1.09009 * 109.46915 * 59.99751 * 13 12 11 37 37 H 1.09001 * 109.47232 * 300.00373 * 13 12 11 38 38 H 1.08997 * 109.58705 * 6.60046 * 17 16 14 39 39 H 1.09000 * 109.58235 * 246.31745 * 17 16 14 40 40 H 1.09003 * 109.49142 * 174.51180 * 18 17 16 41 41 H 1.08995 * 109.49404 * 294.57591 * 18 17 16 42 42 H 1.09003 * 109.46308 * 58.65283 * 19 18 17 43 43 H 0.96998 * 120.00266 * 24.99830 * 20 19 18 44 44 H 1.09000 * 109.47034 * 64.99885 * 23 21 20 45 45 H 1.08991 * 109.50032 * 181.31919 * 26 19 18 46 46 H 1.09001 * 109.49771 * 301.42166 * 26 19 18 47 47 H 1.09000 * 109.46446 * 113.75538 * 27 16 14 48 48 H 1.09004 * 109.71433 * 353.46968 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5386 2.3401 0.4707 6 7 0.4118 2.2596 1.1459 7 14 2.3158 4.0074 0.1457 8 1 1.7987 4.5534 -1.1348 9 1 1.9758 4.9363 1.2532 10 1 3.7907 3.8578 0.0603 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2181 -3.0345 -1.4437 14 6 3.4687 -3.4692 -2.8647 15 8 3.0743 -2.7866 -3.7862 16 7 4.1312 -4.6168 -3.1114 17 6 4.3837 -5.0536 -4.4913 18 6 5.8829 -5.3189 -4.6613 19 6 6.3452 -6.3125 -3.5931 20 7 7.7718 -6.5936 -3.7730 21 6 8.2912 -7.7546 -3.3271 22 8 7.5778 -8.5663 -2.7766 23 6 9.7587 -8.0437 -3.5116 24 9 10.0364 -9.3436 -3.0755 25 9 10.0906 -7.9251 -4.8655 26 6 6.1152 -5.7140 -2.2035 27 6 4.6191 -5.4529 -2.0057 28 1 -0.3633 0.0917 1.0236 29 1 -0.3633 0.8405 -0.5912 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0154 3.0663 1.4745 32 1 1.6085 -2.0285 0.5131 33 1 3.1500 -1.1385 0.5134 34 1 3.0416 -0.9499 -1.9567 35 1 1.5001 -1.8399 -1.9570 36 1 2.6294 -3.7946 -0.9300 37 1 4.1705 -2.9039 -0.9299 38 1 4.0697 -4.2734 -5.1848 39 1 3.8256 -5.9679 -4.6930 40 1 6.0685 -5.7361 -5.6510 41 1 6.4324 -4.3840 -4.5516 42 1 5.7778 -7.2383 -3.6882 43 1 8.3424 -5.9443 -4.2130 44 1 10.3450 -7.3323 -2.9301 45 1 6.4662 -6.4124 -1.4439 46 1 6.6626 -4.7755 -2.1163 47 1 4.0804 -6.4005 -2.0018 48 1 4.4602 -4.9384 -1.0579 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699686261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:40 Heat of formation + Delta-G solvation = -179.399648 kcal Electronic energy + Delta-G solvation = -30383.360047 eV Core-core repulsion = 25722.504384 eV Total energy + Delta-G solvation = -4660.855662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.17224 -48.21808 -41.50860 -40.67673 -38.58492 -37.70350 -35.88671 -34.72958 -33.03881 -32.38373 -31.97510 -29.20642 -28.23014 -27.77539 -25.74301 -24.61718 -23.86944 -22.29377 -21.97665 -21.66492 -20.10718 -19.32643 -18.79317 -18.71299 -18.58645 -18.03858 -17.12178 -17.01676 -16.83956 -16.63447 -16.08526 -15.88150 -15.68061 -15.37323 -15.11023 -15.00418 -14.96730 -14.61758 -14.55120 -14.50974 -14.31070 -14.16269 -13.87052 -13.46952 -13.22236 -13.16809 -13.03199 -12.88929 -12.70775 -12.51357 -12.40316 -12.27969 -12.21979 -12.10479 -12.06228 -11.81139 -11.71927 -11.38202 -11.11055 -10.82572 -10.61460 -10.32755 -9.71547 -8.74945 -7.80891 -5.29962 1.02307 1.45190 1.47961 1.47979 1.55973 1.67262 1.98251 2.52029 2.89278 3.08456 3.31115 3.49265 3.59685 3.67957 3.69279 3.76256 3.81390 4.00544 4.04086 4.18512 4.27074 4.29063 4.37402 4.46737 4.66677 4.70939 4.75899 4.77851 4.82547 4.83921 4.88614 4.96747 4.99286 5.02023 5.11362 5.27687 5.29889 5.35011 5.55620 5.61729 5.65728 5.70627 6.14618 6.34401 6.37072 6.80349 7.17091 7.20366 7.90714 8.34165 9.22133 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019737 B = 0.001710 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.344350 B =16373.689839 C =16721.745717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.624 5.624 3 C -0.259 4.259 4 H 0.069 0.931 5 C -0.059 4.059 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.266 1.266 11 C 0.150 3.850 12 C -0.107 4.107 13 C -0.126 4.126 14 C 0.513 3.487 15 O -0.587 6.587 16 N -0.613 5.613 17 C 0.109 3.891 18 C -0.129 4.129 19 C 0.146 3.854 20 N -0.693 5.693 21 C 0.472 3.528 22 O -0.546 6.546 23 C 0.259 3.741 24 F -0.196 7.196 25 F -0.192 7.192 26 C -0.140 4.140 27 C 0.105 3.895 28 H 0.008 0.992 29 H 0.008 0.992 30 H 0.028 0.972 31 H 0.247 0.753 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.422 0.578 44 H 0.190 0.810 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.469 -23.819 -10.117 32.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.348 5.348 3 C -0.389 4.389 4 H 0.087 0.913 5 C -0.253 4.253 6 N -0.587 5.587 7 Si 0.796 3.204 8 H -0.218 1.218 9 H -0.219 1.219 10 H -0.190 1.190 11 C 0.024 3.976 12 C -0.148 4.148 13 C -0.166 4.166 14 C 0.304 3.696 15 O -0.467 6.467 16 N -0.346 5.346 17 C -0.014 4.014 18 C -0.167 4.167 19 C 0.042 3.958 20 N -0.346 5.346 21 C 0.255 3.745 22 O -0.423 6.423 23 C 0.203 3.797 24 F -0.177 7.177 25 F -0.174 7.174 26 C -0.179 4.179 27 C -0.017 4.017 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.260 0.740 44 H 0.206 0.794 45 H 0.102 0.898 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.673 -23.960 -10.156 32.622 hybrid contribution 0.152 1.308 -0.504 1.410 sum 19.825 -22.651 -10.660 31.933 Atomic orbital electron populations 1.20517 0.83146 0.95597 0.97596 1.44177 1.02104 1.02147 1.86330 1.19507 0.98388 0.86998 1.34005 0.91344 1.25819 0.98800 1.01957 0.98758 1.70232 1.20899 1.27508 1.40100 0.85248 0.78555 0.79871 0.76703 1.21757 1.21896 1.19040 1.20948 0.95961 0.86663 0.93979 1.21752 0.98859 0.95352 0.98814 1.21646 1.03704 0.98527 0.92743 1.21199 0.76400 0.79823 0.92217 1.90691 1.52829 1.55031 1.48148 1.48265 1.56064 1.22283 1.08019 1.21566 0.95812 1.00804 0.83180 1.22099 0.95398 0.99600 0.99616 1.21031 0.80442 0.98911 0.95406 1.45902 1.11031 1.18966 1.58671 1.21473 0.90610 0.82735 0.79731 1.90824 1.61054 1.47606 1.42819 1.22052 0.93966 0.83934 0.79774 1.93034 1.94107 1.41216 1.89357 1.93061 1.93420 1.95989 1.34912 1.22264 0.96402 1.02222 0.97007 1.21931 0.93879 0.95778 0.90122 0.97334 0.97280 0.95317 0.94338 0.92532 0.92937 0.94723 0.94411 0.86362 0.86534 0.90441 0.90141 0.88262 0.90271 0.89894 0.73989 0.79363 0.89833 0.90206 0.89870 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.14 8.98 127.77 1.15 10.28 16 2 N -0.62 -32.33 2.92 -726.92 -2.12 -34.46 16 3 C -0.26 -14.63 9.65 84.03 0.81 -13.82 16 4 H 0.07 3.76 7.86 -2.91 -0.02 3.74 16 5 C -0.06 -3.39 5.10 84.86 0.43 -2.96 16 6 N -0.94 -57.20 10.71 21.65 0.23 -56.97 16 7 Si 0.97 46.27 29.57 68.60 2.03 48.30 16 8 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 C 0.15 5.89 5.64 86.38 0.49 6.38 16 12 C -0.11 -3.79 4.83 30.59 0.15 -3.64 16 13 C -0.13 -2.92 4.05 29.85 0.12 -2.80 16 14 C 0.51 13.28 7.70 87.65 0.67 13.96 16 15 O -0.59 -21.30 15.39 -3.02 -0.05 -21.35 16 16 N -0.61 -10.59 2.98 -818.88 -2.44 -13.04 16 17 C 0.11 1.63 6.43 86.36 0.56 2.18 16 18 C -0.13 -1.12 5.55 30.67 0.17 -0.95 16 19 C 0.15 1.31 2.42 45.02 0.11 1.42 16 20 N -0.69 -4.39 5.08 -442.39 -2.25 -6.64 16 21 C 0.47 5.30 7.60 87.66 0.67 5.97 16 22 O -0.55 -11.27 16.28 -3.03 -0.05 -11.32 16 23 C 0.26 1.75 5.72 71.24 0.41 2.15 16 24 F -0.20 -2.83 16.95 44.97 0.76 -2.07 16 25 F -0.19 -1.66 17.32 44.97 0.78 -0.88 16 26 C -0.14 -1.26 5.65 30.66 0.17 -1.09 16 27 C 0.11 1.14 6.33 86.34 0.55 1.69 16 28 H 0.01 0.47 7.34 -2.38 -0.02 0.45 16 29 H 0.01 0.48 7.34 -2.39 -0.02 0.46 16 30 H 0.03 1.26 8.03 -2.39 -0.02 1.25 16 31 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 32 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 33 H 0.05 1.98 8.04 -2.38 -0.02 1.96 16 34 H 0.03 1.42 8.10 -2.39 -0.02 1.40 16 35 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.12 2.09 7.95 -2.38 -0.02 2.08 16 37 H 0.12 2.11 7.69 -2.39 -0.02 2.10 16 38 H 0.08 1.56 7.01 -2.39 -0.02 1.54 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 1.03 7.58 -2.39 -0.02 1.01 16 43 H 0.42 0.30 8.60 -92.71 -0.80 -0.50 16 44 H 0.19 -0.64 8.14 -2.39 -0.02 -0.66 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 0.95 5.95 -2.39 -0.01 0.93 16 Total: -1.00 -83.31 397.14 3.52 -79.79 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 0.18 Total: -0.14 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 6.45 Total: 18.77 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -6.58 Total: -111.10 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.10 Total: -32.67 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 1.54 Total: -2.95 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -83.31 3.52 -79.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699686261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.605 kcal (2) G-P(sol) polarization free energy of solvation -83.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds