Wall clock time and date at job start Wed Apr 1 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00305 * 2 1 4 4 O 1.21625 * 120.00297 * 176.15160 * 3 2 1 5 5 C 1.47322 * 120.00002 * 356.14603 * 3 2 1 6 6 C 1.36298 * 126.23195 * 185.88165 * 5 3 2 7 7 N 1.35755 * 106.91828 * 179.90023 * 6 5 3 8 8 C 1.35681 * 107.69440 * 0.26433 * 7 6 5 9 9 N 1.30592 * 108.91220 * 359.94395 * 8 7 6 10 10 C 1.51605 * 109.81731 * 179.97438 * 8 7 6 11 11 C 1.54504 * 104.28122 * 16.63169 * 10 8 7 12 12 C 1.47070 * 141.30221 * 179.75205 * 7 6 5 13 13 C 1.46506 * 120.00096 * 179.97438 * 2 1 3 14 14 C 1.53507 * 114.17048 * 59.99663 * 13 2 1 15 15 N 1.47477 * 87.93311 * 220.33156 * 14 13 2 16 16 C 1.46900 * 110.99988 * 138.70537 * 15 14 13 17 17 C 1.50703 * 109.47243 * 169.99957 * 16 15 14 18 18 O 1.21283 * 119.99835 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99757 * 179.72402 * 17 16 15 20 20 C 1.37094 * 119.99642 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00449 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99975 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47273 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46953 * 119.99746 * 24 22 20 27 27 H 1.48500 * 109.47513 * 239.99651 * 24 22 20 28 28 C 1.47480 * 87.83529 * 27.01255 * 15 14 13 29 29 H 1.09002 * 109.46896 * 275.67826 * 1 2 3 30 30 H 1.08996 * 109.46820 * 35.67593 * 1 2 3 31 31 H 1.08999 * 109.46969 * 155.67672 * 1 2 3 32 32 H 1.07995 * 126.53568 * 0.06196 * 6 5 3 33 33 H 1.08997 * 110.46683 * 135.33027 * 10 8 7 34 34 H 1.09003 * 110.47211 * 257.79785 * 10 8 7 35 35 H 1.08991 * 110.94505 * 92.78512 * 11 10 8 36 36 H 1.09001 * 110.94640 * 216.49119 * 11 10 8 37 37 H 1.09001 * 110.22551 * 44.29404 * 12 7 6 38 38 H 1.09004 * 110.22861 * 282.35393 * 12 7 6 39 39 H 1.08996 * 113.25701 * 192.95063 * 13 2 1 40 40 H 1.09001 * 113.47337 * 105.56500 * 14 13 2 41 41 H 1.09002 * 113.53294 * 335.10719 * 14 13 2 42 42 H 1.09003 * 109.47250 * 50.00225 * 16 15 14 43 43 H 1.08997 * 109.47135 * 290.00339 * 16 15 14 44 44 H 0.96996 * 120.00013 * 0.02562 * 19 17 16 45 45 H 0.97006 * 120.00220 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.47523 * 87.75448 * 28 15 14 47 47 H 1.08994 * 113.47429 * 218.22109 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3531 1.1683 0.0707 5 6 1.4049 2.4416 -0.0858 6 6 1.9561 3.6821 -0.2083 7 7 0.9287 4.5682 -0.2542 8 6 -0.2273 3.8648 -0.1541 9 7 0.0577 2.5946 -0.0511 10 6 -1.4106 4.8115 -0.1997 11 6 -0.8262 6.1249 -0.7660 12 6 0.6604 6.0099 -0.3661 13 6 2.1975 -1.2688 0.0006 14 6 1.9053 -2.1638 -1.2119 15 7 1.9118 -3.3181 -0.2940 16 6 0.8295 -4.2562 -0.6202 17 6 1.0127 -5.5281 0.1672 18 8 1.9521 -5.6416 0.9259 19 7 0.1292 -6.5370 0.0328 20 6 0.2956 -7.6938 0.7495 21 1 1.1348 -7.7968 1.4215 22 6 -0.6149 -8.7342 0.6106 23 7 -1.6357 -8.6090 -0.2073 24 14 -0.3878 -10.3106 1.5866 25 1 0.8303 -10.2003 2.4288 26 1 -1.5723 -10.5301 2.4550 27 1 -0.2407 -11.4549 0.6517 28 6 1.5043 -2.3943 0.7811 29 1 -0.3633 0.1017 1.0226 30 1 -0.3633 0.8348 -0.5993 31 1 -0.3633 -0.9364 -0.4233 32 1 3.0092 3.9152 -0.2616 33 1 -2.1847 4.4224 -0.8610 34 1 -1.8105 4.9704 0.8017 35 1 -0.9367 6.1652 -1.8496 36 1 -1.2898 6.9922 -0.2959 37 1 1.2924 6.4522 -1.1362 38 1 0.8331 6.5008 0.5918 39 1 3.2579 -1.1534 0.2249 40 1 2.7150 -2.1846 -1.9414 41 1 0.9327 -1.9763 -1.6669 42 1 0.8537 -4.4823 -1.6863 43 1 -0.1302 -3.8065 -0.3659 44 1 -0.6243 -6.4446 -0.5710 45 1 -2.2716 -9.3352 -0.3041 46 1 0.4245 -2.2677 0.8587 47 1 1.9741 -2.6105 1.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699714414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:59 Heat of formation + Delta-G solvation = 65.157552 kcal Electronic energy + Delta-G solvation = -29619.461651 eV Core-core repulsion = 25419.899971 eV Total energy + Delta-G solvation = -4199.561680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.95551 -40.63660 -38.93808 -37.64521 -36.69973 -34.94876 -33.80599 -32.51439 -31.21489 -30.21906 -29.16267 -27.82198 -26.92917 -25.86807 -25.57947 -24.32487 -22.92262 -22.01465 -20.60356 -19.97513 -19.28360 -18.85896 -17.83923 -17.54517 -17.00606 -16.69090 -16.35508 -15.99351 -15.73138 -15.05126 -14.74073 -14.65238 -14.45131 -14.26409 -13.99568 -13.93603 -13.72168 -13.48723 -13.21951 -13.06758 -12.81192 -12.67300 -12.47782 -12.37754 -12.25740 -12.16005 -11.77258 -11.58801 -11.41330 -11.05076 -10.75816 -10.62111 -10.37512 -10.29333 -10.16644 -10.15089 -9.90932 -9.44803 -8.90596 -8.73750 -8.50870 -8.13672 -7.89359 -6.35604 -3.75952 1.28596 2.00843 2.08963 2.93119 3.20924 3.21581 3.30950 3.33185 3.38942 3.74917 3.94296 3.97945 4.04599 4.13602 4.33487 4.47719 4.54221 4.61816 4.66089 4.73025 4.92007 4.96790 5.05699 5.07590 5.15302 5.22584 5.23686 5.25724 5.41516 5.48112 5.64156 5.68494 5.70711 5.76100 5.81525 5.89854 6.04925 6.18862 6.26229 6.33128 6.37998 6.58366 6.64222 7.21633 7.33384 7.49886 7.61518 8.13039 8.14175 8.69271 9.25259 9.61690 10.14555 10.82510 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.001754 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.248035 B =15961.197983 C =16689.707343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.589 5.589 3 C 0.605 3.395 4 O -0.544 6.544 5 C -0.050 4.050 6 C 0.054 3.946 7 N -0.479 5.479 8 C 0.185 3.815 9 N -0.444 5.444 10 C -0.041 4.041 11 C -0.130 4.130 12 C 0.100 3.900 13 C 0.117 3.883 14 C -0.018 4.018 15 N -0.434 5.434 16 C 0.011 3.989 17 C 0.448 3.552 18 O -0.573 6.573 19 N -0.569 5.569 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.904 5.904 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C -0.004 4.004 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.186 0.814 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.074 0.926 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 34.772 -4.199 35.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.320 5.320 3 C 0.393 3.607 4 O -0.421 6.421 5 C -0.179 4.179 6 C -0.083 4.083 7 N -0.162 5.162 8 C -0.079 4.079 9 N -0.164 5.164 10 C -0.080 4.080 11 C -0.168 4.168 12 C -0.021 4.021 13 C 0.013 3.987 14 C -0.148 4.148 15 N -0.156 5.156 16 C -0.121 4.121 17 C 0.233 3.767 18 O -0.456 6.456 19 N -0.206 5.206 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.546 5.546 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.134 4.134 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.203 0.797 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.151 0.849 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.584 33.583 -3.557 33.808 hybrid contribution -0.780 0.124 -0.151 0.804 sum -2.364 33.707 -3.708 33.993 Atomic orbital electron populations 1.22220 0.78254 1.03552 1.03042 1.47599 1.07665 1.04943 1.71807 1.16875 0.85891 0.81898 0.76000 1.90799 1.12972 1.86983 1.51396 1.20488 0.89511 0.93375 1.14489 1.22206 0.93888 0.87418 1.04833 1.46367 1.07827 1.08781 1.53254 1.24674 0.89312 0.88565 1.05301 1.70406 1.12947 1.14125 1.18948 1.20694 0.93183 0.90261 1.03885 1.22745 0.92600 0.98387 1.03043 1.22499 0.98385 0.77387 1.03784 1.22819 0.98565 0.80502 0.96788 1.24395 1.02042 0.91122 0.97261 1.68776 1.37053 1.06072 1.03715 1.22493 0.93396 0.95154 1.01048 1.19663 0.85287 0.85013 0.86758 1.90528 1.32612 1.81778 1.40638 1.41872 1.24684 1.13764 1.40292 1.19755 1.10636 0.91050 1.21102 0.87903 1.25244 0.95531 0.99683 0.97617 1.69624 1.13928 1.33917 1.37115 0.85806 0.78354 0.81015 0.79209 1.19235 1.20830 1.20804 1.24351 0.99618 0.90698 0.98727 0.92576 0.87495 0.92045 0.79670 0.88070 0.88262 0.89209 0.87766 0.88766 0.88803 0.84945 0.89137 0.91148 0.89291 0.92284 0.77579 0.92032 0.90827 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.42 59.85 0.50 1.33 16 2 N -0.59 -8.00 3.11 -174.93 -0.54 -8.55 16 3 C 0.61 8.78 7.66 -12.57 -0.10 8.69 16 4 O -0.54 -9.22 16.39 5.26 0.09 -9.14 16 5 C -0.05 -0.61 6.66 -83.19 -0.55 -1.16 16 6 C 0.05 0.52 11.75 -16.51 -0.19 0.33 16 7 N -0.48 -3.42 3.55 -112.00 -0.40 -3.82 16 8 C 0.19 1.51 8.58 -154.31 -1.32 0.18 16 9 N -0.44 -4.96 7.78 -6.96 -0.05 -5.02 16 10 C -0.04 -0.14 6.85 -26.65 -0.18 -0.32 16 11 C -0.13 -0.10 7.16 -25.22 -0.18 -0.28 16 12 C 0.10 0.24 7.78 -3.01 -0.02 0.22 16 13 C 0.12 1.72 4.56 -67.72 -0.31 1.41 16 14 C -0.02 -0.26 7.23 -7.56 -0.05 -0.31 16 15 N -0.43 -7.81 5.82 -246.13 -1.43 -9.25 16 16 C 0.01 0.21 5.30 -4.97 -0.03 0.19 16 17 C 0.45 11.12 7.85 -10.98 -0.09 11.03 16 18 O -0.57 -16.47 16.01 5.55 0.09 -16.38 16 19 N -0.57 -14.91 5.29 -10.96 -0.06 -14.96 16 20 C -0.30 -8.50 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.11 7.16 -52.49 -0.38 2.74 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 24 Si 0.93 21.59 29.55 -169.99 -5.02 16.56 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C 0.00 -0.07 7.11 -7.55 -0.05 -0.12 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.11 1.22 5.24 -51.93 -0.27 0.95 16 31 H 0.06 0.67 5.97 -51.93 -0.31 0.36 16 32 H 0.19 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 36 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 37 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.13 2.11 7.26 -51.93 -0.38 1.73 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.07 0.90 6.82 -51.93 -0.35 0.54 16 42 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 43 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 44 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.07 1.09 5.71 -51.93 -0.30 0.79 16 47 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -37.62 385.05 -10.10 -47.72 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.47 Total: 8.40 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -2.82 Total: 13.00 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.76 Total: -65.97 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: 0.18 Total: -25.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.62 -10.10 -47.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699714414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.878 kcal (2) G-P(sol) polarization free energy of solvation -37.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds