Wall clock time and date at job start Wed Apr 1 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34775 * 120.00305 * 2 1 4 4 O 1.21625 * 120.00297 * 176.15160 * 3 2 1 5 5 C 1.47322 * 120.00002 * 356.14603 * 3 2 1 6 6 C 1.36298 * 126.23195 * 185.88165 * 5 3 2 7 7 N 1.35755 * 106.91828 * 179.90023 * 6 5 3 8 8 C 1.35681 * 107.69440 * 0.26433 * 7 6 5 9 9 N 1.30592 * 108.91220 * 359.94395 * 8 7 6 10 10 C 1.51605 * 109.81731 * 179.97438 * 8 7 6 11 11 C 1.54504 * 104.28122 * 16.63169 * 10 8 7 12 12 C 1.47070 * 141.30221 * 179.75205 * 7 6 5 13 13 C 1.46506 * 120.00096 * 179.97438 * 2 1 3 14 14 C 1.53507 * 114.17048 * 59.99663 * 13 2 1 15 15 N 1.47477 * 87.93311 * 220.33156 * 14 13 2 16 16 C 1.46900 * 110.99988 * 138.70537 * 15 14 13 17 17 C 1.50703 * 109.47243 * 169.99957 * 16 15 14 18 18 O 1.21283 * 119.99835 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99757 * 179.72402 * 17 16 15 20 20 C 1.37094 * 119.99642 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00449 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99975 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99793 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00063 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47273 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46953 * 119.99746 * 24 22 20 27 27 H 1.48500 * 109.47513 * 239.99651 * 24 22 20 28 28 C 1.47480 * 87.83529 * 27.01255 * 15 14 13 29 29 H 1.09002 * 109.46896 * 275.67826 * 1 2 3 30 30 H 1.08996 * 109.46820 * 35.67593 * 1 2 3 31 31 H 1.08999 * 109.46969 * 155.67672 * 1 2 3 32 32 H 1.07995 * 126.53568 * 0.06196 * 6 5 3 33 33 H 1.08997 * 110.46683 * 135.33027 * 10 8 7 34 34 H 1.09003 * 110.47211 * 257.79785 * 10 8 7 35 35 H 1.08991 * 110.94505 * 92.78512 * 11 10 8 36 36 H 1.09001 * 110.94640 * 216.49119 * 11 10 8 37 37 H 1.09001 * 110.22551 * 44.29404 * 12 7 6 38 38 H 1.09004 * 110.22861 * 282.35393 * 12 7 6 39 39 H 1.08996 * 113.25701 * 192.95063 * 13 2 1 40 40 H 1.09001 * 113.47337 * 105.56500 * 14 13 2 41 41 H 1.09002 * 113.53294 * 335.10719 * 14 13 2 42 42 H 1.09003 * 109.47250 * 50.00225 * 16 15 14 43 43 H 1.08997 * 109.47135 * 290.00339 * 16 15 14 44 44 H 0.96996 * 120.00013 * 0.02562 * 19 17 16 45 45 H 0.97006 * 120.00220 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.47523 * 87.75448 * 28 15 14 47 47 H 1.08994 * 113.47429 * 218.22109 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3531 1.1683 0.0707 5 6 1.4049 2.4416 -0.0858 6 6 1.9561 3.6821 -0.2083 7 7 0.9287 4.5682 -0.2542 8 6 -0.2273 3.8648 -0.1541 9 7 0.0577 2.5946 -0.0511 10 6 -1.4106 4.8115 -0.1997 11 6 -0.8262 6.1249 -0.7660 12 6 0.6604 6.0099 -0.3661 13 6 2.1975 -1.2688 0.0006 14 6 1.9053 -2.1638 -1.2119 15 7 1.9118 -3.3181 -0.2940 16 6 0.8295 -4.2562 -0.6202 17 6 1.0127 -5.5281 0.1672 18 8 1.9521 -5.6416 0.9259 19 7 0.1292 -6.5370 0.0328 20 6 0.2956 -7.6938 0.7495 21 1 1.1348 -7.7968 1.4215 22 6 -0.6149 -8.7342 0.6106 23 7 -1.6357 -8.6090 -0.2073 24 14 -0.3878 -10.3106 1.5866 25 1 0.8303 -10.2003 2.4288 26 1 -1.5723 -10.5301 2.4550 27 1 -0.2407 -11.4549 0.6517 28 6 1.5043 -2.3943 0.7811 29 1 -0.3633 0.1017 1.0226 30 1 -0.3633 0.8348 -0.5993 31 1 -0.3633 -0.9364 -0.4233 32 1 3.0092 3.9152 -0.2616 33 1 -2.1847 4.4224 -0.8610 34 1 -1.8105 4.9704 0.8017 35 1 -0.9367 6.1652 -1.8496 36 1 -1.2898 6.9922 -0.2959 37 1 1.2924 6.4522 -1.1362 38 1 0.8331 6.5008 0.5918 39 1 3.2579 -1.1534 0.2249 40 1 2.7150 -2.1846 -1.9414 41 1 0.9327 -1.9763 -1.6669 42 1 0.8537 -4.4823 -1.6863 43 1 -0.1302 -3.8065 -0.3659 44 1 -0.6243 -6.4446 -0.5710 45 1 -2.2716 -9.3352 -0.3041 46 1 0.4245 -2.2677 0.8587 47 1 1.9741 -2.6105 1.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699714414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:58 Heat of formation + Delta-G solvation = 36.744625 kcal Electronic energy + Delta-G solvation = -29620.693728 eV Core-core repulsion = 25419.899971 eV Total energy + Delta-G solvation = -4200.793757 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.55806 -41.87703 -40.24222 -39.43278 -37.15746 -36.15078 -35.83195 -33.30621 -33.03704 -31.56721 -29.90864 -28.28231 -27.92903 -27.38170 -26.91874 -25.73504 -23.95640 -22.41566 -21.34399 -21.03174 -20.89187 -20.10095 -19.83983 -18.23704 -17.94084 -17.73890 -17.51162 -17.09095 -16.84969 -16.54733 -16.22333 -16.01123 -15.71644 -15.35204 -15.06500 -14.95363 -14.65361 -14.21269 -14.16245 -13.94831 -13.93808 -13.73879 -13.67345 -13.50669 -13.37475 -13.19717 -13.03624 -12.81089 -12.44347 -12.41237 -12.13338 -12.02656 -11.96500 -11.89023 -11.50798 -11.37623 -10.84574 -10.66958 -10.40624 -10.00904 -9.82792 -9.79869 -9.41376 -8.46669 -5.95245 0.48497 1.31169 1.36324 1.41251 1.54484 1.56132 1.96528 2.05396 2.29579 2.37715 2.76216 2.85992 3.18983 3.33736 3.39052 3.47613 3.58756 3.69524 3.91998 3.97512 4.05520 4.15419 4.18190 4.24253 4.33143 4.37708 4.40460 4.47470 4.51044 4.59513 4.62774 4.72919 4.76888 4.89683 4.92761 4.95851 5.09474 5.12046 5.17731 5.25735 5.38491 5.41571 5.65145 5.84557 5.89784 6.05364 6.31276 6.61133 6.77821 7.10173 7.13468 7.56396 8.13449 8.71060 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025536 B = 0.001754 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.248035 B =15961.197983 C =16689.707343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.588 5.588 3 C 0.599 3.401 4 O -0.581 6.581 5 C -0.085 4.085 6 C 0.057 3.943 7 N -0.476 5.476 8 C 0.182 3.818 9 N -0.474 5.474 10 C -0.042 4.042 11 C -0.116 4.116 12 C 0.089 3.911 13 C 0.126 3.874 14 C -0.003 4.003 15 N -0.468 5.468 16 C 0.025 3.975 17 C 0.442 3.558 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.276 1.276 26 H -0.269 1.269 27 H -0.270 1.270 28 C -0.002 4.002 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.196 0.804 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.135 0.865 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.087 0.913 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 37.046 -5.165 37.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.318 5.318 3 C 0.389 3.611 4 O -0.462 6.462 5 C -0.213 4.213 6 C -0.083 4.083 7 N -0.157 5.157 8 C -0.083 4.083 9 N -0.195 5.195 10 C -0.081 4.081 11 C -0.154 4.154 12 C -0.030 4.030 13 C 0.021 3.979 14 C -0.133 4.133 15 N -0.191 5.191 16 C -0.107 4.107 17 C 0.229 3.771 18 O -0.505 6.505 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.201 1.201 26 H -0.194 1.194 27 H -0.195 1.195 28 C -0.132 4.132 29 H 0.072 0.928 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.212 0.788 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.105 0.895 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.801 35.896 -4.555 36.383 hybrid contribution -0.133 -0.452 0.158 0.497 sum -3.934 35.445 -4.397 35.932 Atomic orbital electron populations 1.22270 0.76847 1.04270 1.03098 1.47637 1.08406 1.04309 1.71490 1.17286 0.85693 0.82875 0.75203 1.90759 1.14513 1.87623 1.53263 1.20270 0.90433 0.93061 1.17530 1.22343 0.94883 0.87381 1.03705 1.46715 1.06752 1.10528 1.51738 1.25618 0.91321 0.88192 1.03133 1.70267 1.12335 1.16270 1.20591 1.20986 0.91720 0.90214 1.05155 1.22819 0.90970 0.97952 1.03619 1.22971 0.99978 0.74630 1.05374 1.22502 0.97607 0.80967 0.96829 1.24371 1.03535 0.88761 0.96617 1.68712 1.37345 1.07494 1.05507 1.22377 0.94963 0.92304 1.01025 1.20750 0.83872 0.86329 0.86141 1.90495 1.34362 1.82959 1.42708 1.41920 1.25246 1.13708 1.40330 1.19685 1.11033 0.93076 1.22538 0.90610 1.26023 0.94806 1.02190 0.98194 1.69673 1.14058 1.35033 1.37298 0.84874 0.78240 0.77226 0.77992 1.20059 1.19414 1.19490 1.24347 1.00477 0.90847 0.97521 0.92834 0.87058 0.90965 0.78754 0.87239 0.86932 0.88611 0.84677 0.87241 0.87192 0.86869 0.88553 0.88709 0.86978 0.89470 0.76918 0.91271 0.89163 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.73 8.42 127.77 1.08 2.80 16 2 N -0.59 -16.18 3.11 -825.60 -2.57 -18.75 16 3 C 0.60 18.05 7.66 86.63 0.66 18.71 16 4 O -0.58 -20.76 16.39 -4.11 -0.07 -20.83 16 5 C -0.08 -2.11 6.66 40.50 0.27 -1.84 16 6 C 0.06 1.09 11.75 83.63 0.98 2.07 16 7 N -0.48 -5.97 3.55 -508.25 -1.80 -7.78 16 8 C 0.18 2.68 8.58 138.19 1.19 3.86 16 9 N -0.47 -10.39 7.78 -175.92 -1.37 -11.76 16 10 C -0.04 -0.15 6.85 30.65 0.21 0.06 16 11 C -0.12 0.28 7.16 31.57 0.23 0.51 16 12 C 0.09 0.15 7.78 86.74 0.67 0.82 16 13 C 0.13 3.74 4.56 45.44 0.21 3.95 16 14 C 0.00 -0.09 7.23 83.57 0.60 0.51 16 15 N -0.47 -16.76 5.82 -932.60 -5.43 -22.19 16 16 C 0.03 0.91 5.30 85.56 0.45 1.36 16 17 C 0.44 22.27 7.85 87.66 0.69 22.96 16 18 O -0.62 -36.91 16.01 -3.04 -0.05 -36.95 16 19 N -0.57 -30.54 5.29 -306.99 -1.62 -32.16 16 20 C -0.33 -19.63 9.68 84.04 0.81 -18.81 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 23 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 24 Si 0.99 44.11 29.55 68.60 2.03 46.14 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 C 0.00 -0.07 7.11 83.57 0.59 0.52 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 2.48 5.24 -2.39 -0.01 2.47 16 31 H 0.07 1.43 5.97 -2.39 -0.01 1.42 16 32 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 36 H 0.14 -1.08 8.14 -2.39 -0.02 -1.10 16 37 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.11 3.83 7.26 -2.39 -0.02 3.81 16 40 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.09 2.16 6.82 -2.39 -0.02 2.15 16 42 H 0.11 3.56 8.08 -2.39 -0.02 3.54 16 43 H 0.09 2.68 7.30 -2.39 -0.02 2.67 16 44 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 45 H 0.28 14.17 8.31 -92.70 -0.77 13.39 16 46 H 0.09 2.59 5.71 -2.39 -0.01 2.58 16 47 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -85.12 385.05 -1.20 -86.32 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.29 Total: 30.79 kcal Atomic # 6 Polarization: 28.16 SS G_CDS: 9.12 Total: 37.28 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -12.51 Total: -142.73 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -0.12 Total: -57.78 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -85.12 -1.20 -86.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699714414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.060 kcal (2) G-P(sol) polarization free energy of solvation -85.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds