Wall clock time and date at job start Wed Apr 1 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34778 * 119.99711 * 2 1 4 4 O 1.21606 * 119.99605 * 175.70236 * 3 2 1 5 5 C 1.47425 * 120.00094 * 355.70810 * 3 2 1 6 6 C 1.38046 * 126.41710 * 35.27279 * 5 3 2 7 7 N 1.34254 * 107.42105 * 179.97438 * 6 5 3 8 8 H 0.96996 * 125.75661 * 180.02562 * 7 6 5 9 9 N 1.39942 * 108.48928 * 359.97438 * 7 6 5 10 10 C 1.30451 * 108.89558 * 359.73840 * 9 7 6 11 11 C 1.50699 * 125.98637 * 180.26453 * 10 9 7 12 12 C 1.52998 * 117.50020 * 8.78989 * 11 10 9 13 13 C 1.52994 * 117.50018 * 300.16682 * 11 10 9 14 14 C 1.46497 * 120.00055 * 180.02562 * 2 1 3 15 15 C 1.53513 * 114.16997 * 59.99931 * 14 2 1 16 16 N 1.47486 * 87.93278 * 220.32717 * 15 14 2 17 17 C 1.46899 * 110.99837 * 138.70542 * 16 15 14 18 18 C 1.50692 * 109.47098 * 170.00277 * 17 16 15 19 19 O 1.21298 * 120.00065 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00464 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00628 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99706 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00397 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99778 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00009 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47207 * 90.00045 * 25 23 21 27 27 H 1.48501 * 109.47093 * 209.99666 * 25 23 21 28 28 H 1.48498 * 109.47331 * 329.99303 * 25 23 21 29 29 C 1.47483 * 87.83333 * 27.01198 * 16 15 14 30 30 H 1.08999 * 109.46810 * 275.36804 * 1 2 3 31 31 H 1.09003 * 109.47172 * 35.37298 * 1 2 3 32 32 H 1.09005 * 109.46826 * 155.36818 * 1 2 3 33 33 H 1.08001 * 126.29193 * 359.95891 * 6 5 3 34 34 H 1.09004 * 115.54867 * 154.49423 * 11 10 9 35 35 H 1.09002 * 117.50115 * 0.02562 * 12 11 10 36 36 H 1.09004 * 117.49702 * 145.02115 * 12 11 10 37 37 H 1.09002 * 117.50142 * 214.97841 * 13 11 10 38 38 H 1.09000 * 117.50002 * 359.97438 * 13 11 10 39 39 H 1.08994 * 113.25605 * 192.94759 * 14 2 1 40 40 H 1.09000 * 113.47804 * 105.56156 * 15 14 2 41 41 H 1.09001 * 113.47930 * 335.09180 * 15 14 2 42 42 H 1.09002 * 109.47467 * 49.99694 * 17 16 15 43 43 H 1.09001 * 109.46849 * 290.00032 * 17 16 15 44 44 H 0.97006 * 119.99715 * 0.02562 * 20 18 17 45 45 H 0.97004 * 120.00393 * 179.97438 * 24 23 21 46 46 H 1.08992 * 113.47547 * 87.75376 * 29 16 15 47 47 H 1.09002 * 113.47209 * 218.22304 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3524 1.1687 0.0789 5 6 1.4048 2.4422 -0.0955 6 6 0.1709 2.7208 0.4571 7 7 -0.1361 3.9879 0.1370 8 1 -0.9464 4.4564 0.3913 9 7 0.9109 4.5194 -0.6245 10 6 1.8357 3.6100 -0.7639 11 6 3.1343 3.7749 -1.5105 12 6 3.4988 5.1807 -1.9921 13 6 3.0546 4.1182 -2.9993 14 6 2.1976 -1.2687 -0.0006 15 6 1.9054 -2.1626 -1.2139 16 7 1.9119 -3.3178 -0.2970 17 6 0.8297 -4.2557 -0.6242 18 6 1.0129 -5.5282 0.1621 19 8 1.9529 -5.6427 0.9201 20 7 0.1323 -6.5390 0.0231 21 6 0.2993 -7.6969 0.7379 22 1 1.1362 -7.7988 1.4129 23 6 -0.6083 -8.7392 0.5942 24 7 -1.6269 -8.6149 -0.2266 25 14 -0.3811 -10.3164 1.5689 26 1 -1.0949 -10.2038 2.8662 27 1 -0.9336 -11.4588 0.7976 28 1 1.0656 -10.5407 1.8176 29 6 1.5044 -2.3951 0.7789 30 1 -0.3633 0.0961 1.0232 31 1 -0.3634 0.8380 -0.5949 32 1 -0.3633 -0.9342 -0.4283 33 1 -0.4362 2.0437 1.0397 34 1 3.9486 3.1268 -1.1864 35 1 2.7995 5.9864 -1.7685 36 1 4.5530 5.4577 -1.9847 37 1 3.8165 3.6963 -3.6547 38 1 2.0628 4.2244 -3.4389 39 1 3.2579 -1.1535 0.2239 40 1 2.7149 -2.1828 -1.9434 41 1 0.9325 -1.9742 -1.6679 42 1 0.8538 -4.4807 -1.6905 43 1 -0.1301 -3.8062 -0.3694 44 1 -0.6192 -6.4476 -0.5834 45 1 -2.2603 -9.3426 -0.3273 46 1 0.4247 -2.2686 0.8566 47 1 1.9743 -2.6121 1.7382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699721683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:31 Heat of formation + Delta-G solvation = 87.411488 kcal Electronic energy + Delta-G solvation = -29768.587631 eV Core-core repulsion = 25569.990954 eV Total energy + Delta-G solvation = -4198.596677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.94661 -40.66659 -38.83041 -37.69429 -37.37553 -35.16459 -33.87648 -31.83975 -31.37031 -31.03773 -29.64434 -27.40549 -25.95011 -25.62440 -24.44581 -24.09026 -22.74551 -22.53294 -20.62530 -19.61873 -19.45713 -19.16735 -18.11850 -17.90400 -17.06741 -16.38280 -16.08259 -15.96328 -15.87666 -15.24030 -15.15237 -14.82780 -14.56581 -14.45577 -14.14482 -13.84473 -13.69794 -13.28496 -13.05439 -12.83849 -12.61680 -12.47191 -12.29368 -12.16878 -11.83336 -11.68129 -11.51981 -11.47846 -11.30747 -11.08275 -10.89123 -10.70923 -10.68137 -10.38972 -10.21253 -10.02611 -9.67194 -9.49670 -9.14484 -8.84128 -8.78002 -8.21591 -7.95696 -6.41467 -3.82015 1.14840 1.74443 2.22993 2.70375 2.98731 3.17877 3.26504 3.32944 3.66507 3.90354 3.94643 4.05280 4.16728 4.26159 4.40256 4.49888 4.59831 4.69669 4.73133 4.79399 4.92598 4.95508 5.03117 5.07056 5.17067 5.24766 5.26429 5.32881 5.37026 5.37709 5.55095 5.60061 5.64707 5.75333 5.84569 5.89348 5.90559 5.98948 6.05499 6.22648 6.35525 6.49780 6.65431 7.07531 7.12603 7.24033 7.55660 8.04262 8.06610 8.62673 9.19128 9.54960 10.07592 10.76443 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026858 B = 0.001812 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.277476 B =15449.312679 C =15849.586424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.597 3.403 4 O -0.533 6.533 5 C -0.276 4.276 6 C 0.099 3.901 7 N -0.462 5.462 8 H 0.445 0.555 9 N -0.296 5.296 10 C 0.164 3.836 11 C -0.090 4.090 12 C -0.164 4.164 13 C -0.161 4.161 14 C 0.121 3.879 15 C -0.019 4.019 16 N -0.433 5.433 17 C 0.012 3.988 18 C 0.446 3.554 19 O -0.573 6.573 20 N -0.567 5.567 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.005 4.005 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.190 0.810 34 H 0.139 0.861 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.072 0.928 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 27.362 -3.808 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.333 5.333 3 C 0.386 3.614 4 O -0.409 6.409 5 C -0.291 4.291 6 C -0.053 4.053 7 N -0.166 5.166 8 H 0.289 0.711 9 N -0.119 5.119 10 C -0.003 4.003 11 C -0.110 4.110 12 C -0.202 4.202 13 C -0.199 4.199 14 C 0.017 3.983 15 C -0.149 4.149 16 N -0.155 5.155 17 C -0.120 4.120 18 C 0.231 3.769 19 O -0.456 6.456 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.135 4.135 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.207 0.793 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.153 0.847 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.103 27.864 -3.493 28.082 hybrid contribution -1.918 -1.170 0.360 2.275 sum -2.020 26.695 -3.133 26.954 Atomic orbital electron populations 1.22046 0.80135 1.03753 1.01621 1.47644 1.06591 1.05568 1.73528 1.17279 0.86525 0.82138 0.75487 1.90764 1.13476 1.86995 1.49698 1.20142 0.97852 0.97101 1.14053 1.23425 0.96000 0.87653 0.98199 1.46085 1.18669 1.10293 1.41593 0.71053 1.77101 0.97350 1.21564 1.15846 1.21385 0.94187 0.89430 0.95277 1.20551 0.93692 1.01146 0.95630 1.22994 1.02459 0.91847 1.02857 1.23003 1.03277 1.02824 0.90824 1.22802 0.98672 0.80193 0.96653 1.24411 1.02022 0.91128 0.97353 1.68785 1.37071 1.06035 1.03650 1.22490 0.93237 0.95200 1.01113 1.19649 0.85360 0.85041 0.86838 1.90537 1.32481 1.81839 1.40721 1.41868 1.24914 1.13595 1.40108 1.19699 1.10891 0.90943 1.21142 0.87943 1.25246 0.95512 0.99706 0.97547 1.69609 1.14084 1.33993 1.36852 0.85860 0.78795 0.80590 0.79072 1.20467 1.20945 1.19397 1.24369 0.99378 0.90869 0.98906 0.92216 0.90678 0.90501 0.79288 0.84367 0.88077 0.88124 0.87910 0.88703 0.84730 0.89022 0.91270 0.89261 0.92395 0.77596 0.91939 0.91035 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 7.77 59.85 0.47 0.92 16 2 N -0.60 -6.19 3.11 -174.88 -0.54 -6.74 16 3 C 0.60 7.20 7.50 -12.52 -0.09 7.10 16 4 O -0.53 -8.21 15.20 5.27 0.08 -8.13 16 5 C -0.28 -2.76 5.44 -105.07 -0.57 -3.33 16 6 C 0.10 0.62 9.72 -16.56 -0.16 0.46 16 7 N -0.46 -2.82 7.29 30.85 0.22 -2.60 16 8 H 0.44 1.09 8.96 -182.72 -1.64 -0.54 16 9 N -0.30 -2.84 12.22 33.89 0.41 -2.43 16 10 C 0.16 1.74 6.79 -82.02 -0.56 1.18 16 11 C -0.09 -0.90 5.95 -91.78 -0.55 -1.44 16 12 C -0.16 -1.30 10.14 -26.73 -0.27 -1.57 16 13 C -0.16 -1.29 10.23 -26.74 -0.27 -1.56 16 14 C 0.12 1.49 4.57 -67.72 -0.31 1.18 16 15 C -0.02 -0.23 7.23 -7.54 -0.05 -0.29 16 16 N -0.43 -7.10 5.82 -246.09 -1.43 -8.53 16 17 C 0.01 0.20 5.30 -4.98 -0.03 0.18 16 18 C 0.45 10.56 7.85 -10.99 -0.09 10.47 16 19 O -0.57 -15.86 16.01 5.54 0.09 -15.77 16 20 N -0.57 -14.31 5.29 -10.97 -0.06 -14.37 16 21 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 25 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C -0.01 -0.08 7.11 -7.54 -0.05 -0.13 16 30 H 0.06 0.29 7.29 -51.93 -0.38 -0.09 16 31 H 0.07 0.40 5.83 -51.93 -0.30 0.10 16 32 H 0.08 0.52 5.98 -51.93 -0.31 0.21 16 33 H 0.19 0.53 6.09 -52.49 -0.32 0.21 16 34 H 0.14 1.55 6.95 -51.93 -0.36 1.19 16 35 H 0.10 0.83 7.90 -51.93 -0.41 0.42 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.13 1.90 7.26 -51.93 -0.38 1.53 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.07 0.73 6.81 -51.93 -0.35 0.38 16 42 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 43 H 0.06 0.85 7.30 -51.93 -0.38 0.48 16 44 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.07 0.86 5.72 -51.93 -0.30 0.56 16 47 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -36.39 387.89 -9.95 -46.35 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.49 Total: 8.83 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -2.78 Total: 5.20 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.67 Total: -58.35 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.39 -9.95 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699721683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.759 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds