Wall clock time and date at job start Wed Apr 1 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34778 * 119.99711 * 2 1 4 4 O 1.21606 * 119.99605 * 175.70236 * 3 2 1 5 5 C 1.47425 * 120.00094 * 355.70810 * 3 2 1 6 6 C 1.38046 * 126.41710 * 35.27279 * 5 3 2 7 7 N 1.34254 * 107.42105 * 179.97438 * 6 5 3 8 8 H 0.96996 * 125.75661 * 180.02562 * 7 6 5 9 9 N 1.39942 * 108.48928 * 359.97438 * 7 6 5 10 10 C 1.30451 * 108.89558 * 359.73840 * 9 7 6 11 11 C 1.50699 * 125.98637 * 180.26453 * 10 9 7 12 12 C 1.52998 * 117.50020 * 8.78989 * 11 10 9 13 13 C 1.52994 * 117.50018 * 300.16682 * 11 10 9 14 14 C 1.46497 * 120.00055 * 180.02562 * 2 1 3 15 15 C 1.53513 * 114.16997 * 59.99931 * 14 2 1 16 16 N 1.47486 * 87.93278 * 220.32717 * 15 14 2 17 17 C 1.46899 * 110.99837 * 138.70542 * 16 15 14 18 18 C 1.50692 * 109.47098 * 170.00277 * 17 16 15 19 19 O 1.21298 * 120.00065 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00464 * 179.97438 * 18 17 16 21 21 C 1.37095 * 120.00628 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99706 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00397 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99778 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00009 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47207 * 90.00045 * 25 23 21 27 27 H 1.48501 * 109.47093 * 209.99666 * 25 23 21 28 28 H 1.48498 * 109.47331 * 329.99303 * 25 23 21 29 29 C 1.47483 * 87.83333 * 27.01198 * 16 15 14 30 30 H 1.08999 * 109.46810 * 275.36804 * 1 2 3 31 31 H 1.09003 * 109.47172 * 35.37298 * 1 2 3 32 32 H 1.09005 * 109.46826 * 155.36818 * 1 2 3 33 33 H 1.08001 * 126.29193 * 359.95891 * 6 5 3 34 34 H 1.09004 * 115.54867 * 154.49423 * 11 10 9 35 35 H 1.09002 * 117.50115 * 0.02562 * 12 11 10 36 36 H 1.09004 * 117.49702 * 145.02115 * 12 11 10 37 37 H 1.09002 * 117.50142 * 214.97841 * 13 11 10 38 38 H 1.09000 * 117.50002 * 359.97438 * 13 11 10 39 39 H 1.08994 * 113.25605 * 192.94759 * 14 2 1 40 40 H 1.09000 * 113.47804 * 105.56156 * 15 14 2 41 41 H 1.09001 * 113.47930 * 335.09180 * 15 14 2 42 42 H 1.09002 * 109.47467 * 49.99694 * 17 16 15 43 43 H 1.09001 * 109.46849 * 290.00032 * 17 16 15 44 44 H 0.97006 * 119.99715 * 0.02562 * 20 18 17 45 45 H 0.97004 * 120.00393 * 179.97438 * 24 23 21 46 46 H 1.08992 * 113.47547 * 87.75376 * 29 16 15 47 47 H 1.09002 * 113.47209 * 218.22304 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3524 1.1687 0.0789 5 6 1.4048 2.4422 -0.0955 6 6 0.1709 2.7208 0.4571 7 7 -0.1361 3.9879 0.1370 8 1 -0.9464 4.4564 0.3913 9 7 0.9109 4.5194 -0.6245 10 6 1.8357 3.6100 -0.7639 11 6 3.1343 3.7749 -1.5105 12 6 3.4988 5.1807 -1.9921 13 6 3.0546 4.1182 -2.9993 14 6 2.1976 -1.2687 -0.0006 15 6 1.9054 -2.1626 -1.2139 16 7 1.9119 -3.3178 -0.2970 17 6 0.8297 -4.2557 -0.6242 18 6 1.0129 -5.5282 0.1621 19 8 1.9529 -5.6427 0.9201 20 7 0.1323 -6.5390 0.0231 21 6 0.2993 -7.6969 0.7379 22 1 1.1362 -7.7988 1.4129 23 6 -0.6083 -8.7392 0.5942 24 7 -1.6269 -8.6149 -0.2266 25 14 -0.3811 -10.3164 1.5689 26 1 -1.0949 -10.2038 2.8662 27 1 -0.9336 -11.4588 0.7976 28 1 1.0656 -10.5407 1.8176 29 6 1.5044 -2.3951 0.7789 30 1 -0.3633 0.0961 1.0232 31 1 -0.3634 0.8380 -0.5949 32 1 -0.3633 -0.9342 -0.4283 33 1 -0.4362 2.0437 1.0397 34 1 3.9486 3.1268 -1.1864 35 1 2.7995 5.9864 -1.7685 36 1 4.5530 5.4577 -1.9847 37 1 3.8165 3.6963 -3.6547 38 1 2.0628 4.2244 -3.4389 39 1 3.2579 -1.1535 0.2239 40 1 2.7149 -2.1828 -1.9434 41 1 0.9325 -1.9742 -1.6679 42 1 0.8538 -4.4807 -1.6905 43 1 -0.1301 -3.8062 -0.3694 44 1 -0.6192 -6.4476 -0.5834 45 1 -2.2603 -9.3426 -0.3273 46 1 0.4247 -2.2686 0.8566 47 1 1.9743 -2.6121 1.7382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699721683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:27 Heat of formation + Delta-G solvation = 58.147985 kcal Electronic energy + Delta-G solvation = -29769.856592 eV Core-core repulsion = 25569.990954 eV Total energy + Delta-G solvation = -4199.865638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -42.60377 -41.70568 -40.05395 -39.29187 -38.02865 -36.13693 -35.82916 -33.28816 -32.47407 -32.04347 -30.71317 -28.11749 -27.35398 -26.87828 -25.55704 -25.02959 -23.59429 -23.23794 -21.49600 -20.94559 -20.39552 -20.19654 -19.87170 -18.77581 -18.05828 -17.72844 -17.29036 -16.90207 -16.55110 -16.49647 -16.27117 -15.87786 -15.79420 -15.64876 -15.45122 -15.10981 -14.71675 -14.37312 -14.17454 -13.85891 -13.69524 -13.56735 -13.48486 -13.11628 -13.02044 -12.88244 -12.75717 -12.43204 -12.40952 -12.13781 -12.13381 -11.98296 -11.94974 -11.87123 -11.48686 -11.37010 -10.91341 -10.37472 -10.28978 -9.99284 -9.84105 -9.75219 -9.58891 -8.45540 -5.93707 0.57994 1.00760 1.38322 1.42259 1.54675 1.68856 1.94203 2.07760 2.19085 2.30468 2.89144 3.00375 3.20797 3.34264 3.38875 3.47014 3.56863 3.74198 3.93850 4.02116 4.07144 4.12373 4.18146 4.20944 4.29137 4.31071 4.39907 4.41212 4.54403 4.61722 4.63670 4.72655 4.75469 4.79797 4.90944 4.93266 5.00441 5.17841 5.24542 5.30583 5.33390 5.42238 5.48635 5.89566 6.08568 6.25938 6.37180 6.55092 6.62907 7.15207 7.19680 7.58732 8.15948 8.71768 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026858 B = 0.001812 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.277476 B =15449.312679 C =15849.586424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.595 5.595 3 C 0.595 3.405 4 O -0.581 6.581 5 C -0.310 4.310 6 C 0.131 3.869 7 N -0.445 5.445 8 H 0.462 0.538 9 N -0.317 5.317 10 C 0.149 3.851 11 C -0.113 4.113 12 C -0.154 4.154 13 C -0.152 4.152 14 C 0.131 3.869 15 C -0.005 4.005 16 N -0.474 5.474 17 C 0.026 3.974 18 C 0.441 3.559 19 O -0.621 6.621 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.276 1.276 29 C -0.002 4.002 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.099 0.901 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 28.330 -4.226 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.326 5.326 3 C 0.385 3.615 4 O -0.461 6.461 5 C -0.325 4.325 6 C -0.022 4.022 7 N -0.152 5.152 8 H 0.311 0.689 9 N -0.140 5.140 10 C -0.017 4.017 11 C -0.133 4.133 12 C -0.191 4.191 13 C -0.190 4.190 14 C 0.026 3.974 15 C -0.135 4.135 16 N -0.197 5.197 17 C -0.105 4.105 18 C 0.228 3.772 19 O -0.506 6.506 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.093 0.907 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.201 1.201 29 C -0.131 4.131 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.247 0.753 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.981 28.872 -3.936 29.291 hybrid contribution -1.068 -1.416 0.516 1.847 sum -4.049 27.456 -3.420 27.962 Atomic orbital electron populations 1.22402 0.77435 1.04966 1.03757 1.47632 1.08116 1.04129 1.72749 1.17623 0.86108 0.83131 0.74658 1.90737 1.15668 1.87690 1.52013 1.20073 0.99639 0.96216 1.16598 1.23897 0.94559 0.87683 0.96111 1.46130 1.18505 1.10321 1.40200 0.68921 1.77042 0.98127 1.21834 1.17010 1.21495 0.94501 0.89983 0.95760 1.20495 0.93599 1.02136 0.97046 1.23029 1.03110 0.90960 1.02039 1.23041 1.03582 1.02361 0.90018 1.22366 0.97542 0.81087 0.96392 1.24391 1.03499 0.88883 0.96728 1.68710 1.37491 1.07671 1.05802 1.22367 0.95138 0.92223 1.00811 1.20823 0.83796 0.86433 0.86104 1.90506 1.34244 1.83067 1.42817 1.41923 1.25586 1.13535 1.40215 1.19624 1.11156 0.93000 1.22450 0.90661 1.25981 0.94895 1.02106 0.98169 1.69658 1.14232 1.35000 1.37112 0.84965 0.78313 0.77140 0.78145 1.19546 1.19488 1.20109 1.24384 1.00791 0.90646 0.97303 0.89661 0.88865 0.89831 0.75276 0.86552 0.88224 0.86946 0.86956 0.88643 0.87465 0.89256 0.88315 0.87274 0.88993 0.76902 0.91316 0.88345 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 7.77 127.77 0.99 1.51 16 2 N -0.60 -11.28 3.11 -825.45 -2.57 -13.85 16 3 C 0.59 14.16 7.50 86.66 0.65 14.81 16 4 O -0.58 -18.88 15.20 -4.05 -0.06 -18.94 16 5 C -0.31 -5.80 5.44 -20.15 -0.11 -5.91 16 6 C 0.13 1.21 9.72 84.28 0.82 2.03 16 7 N -0.45 -4.11 7.29 -56.32 -0.41 -4.52 16 8 H 0.46 0.64 8.96 -213.43 -1.91 -1.27 16 9 N -0.32 -5.63 12.22 -46.68 -0.57 -6.20 16 10 C 0.15 3.09 6.79 43.51 0.30 3.38 16 11 C -0.11 -2.31 5.95 -11.54 -0.07 -2.38 16 12 C -0.15 -2.42 10.14 30.59 0.31 -2.11 16 13 C -0.15 -2.40 10.23 30.59 0.31 -2.09 16 14 C 0.13 3.18 4.57 45.45 0.21 3.39 16 15 C -0.01 -0.13 7.23 83.57 0.60 0.48 16 16 N -0.47 -15.11 5.82 -932.49 -5.43 -20.54 16 17 C 0.03 0.86 5.30 85.55 0.45 1.31 16 18 C 0.44 20.96 7.85 87.65 0.69 21.65 16 19 O -0.62 -35.39 16.01 -3.09 -0.05 -35.43 16 20 N -0.57 -29.14 5.29 -306.99 -1.62 -30.76 16 21 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 25 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 29 C 0.00 -0.04 7.11 83.58 0.59 0.55 16 30 H 0.09 0.40 7.29 -2.39 -0.02 0.38 16 31 H 0.09 0.57 5.83 -2.39 -0.01 0.56 16 32 H 0.08 0.72 5.98 -2.38 -0.01 0.71 16 33 H 0.23 0.07 6.09 -2.91 -0.02 0.05 16 34 H 0.12 2.86 6.95 -2.38 -0.02 2.85 16 35 H 0.10 1.59 7.90 -2.39 -0.02 1.57 16 36 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 3.22 7.26 -2.39 -0.02 3.20 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.10 1.71 6.81 -2.39 -0.02 1.70 16 42 H 0.11 3.13 8.08 -2.39 -0.02 3.11 16 43 H 0.09 2.37 7.30 -2.39 -0.02 2.36 16 44 H 0.40 18.79 7.90 -92.70 -0.73 18.05 16 45 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 46 H 0.10 2.06 5.72 -2.39 -0.01 2.04 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -83.36 387.89 -2.97 -86.33 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -1.60 Total: 29.18 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 7.03 Total: 18.39 kcal Atomic # 7 Polarization: -114.08 SS G_CDS: -10.32 Total: -124.40 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.11 Total: -54.37 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -83.36 -2.97 -86.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699721683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.474 kcal (2) G-P(sol) polarization free energy of solvation -83.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds