Wall clock time and date at job start Wed Apr 1 2020 05:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28448 * 125.18700 * 2 1 4 4 C 1.30861 * 110.92574 * 180.27998 * 3 2 1 5 5 C 1.39673 * 107.86387 * 359.70980 * 4 3 2 6 6 C 1.36599 * 125.19241 * 179.78577 * 2 1 3 7 7 C 1.47155 * 126.88587 * 359.97438 * 6 2 1 8 8 O 1.21629 * 119.99812 * 355.12954 * 7 6 2 9 9 N 1.34773 * 120.00095 * 175.12801 * 7 6 2 10 10 C 1.46503 * 119.99790 * 175.41722 * 9 7 6 11 11 C 1.53002 * 109.46784 * 180.02562 * 10 9 7 12 12 H 1.08998 * 115.52062 * 29.58005 * 11 10 9 13 13 C 1.53007 * 117.40556 * 244.21387 * 11 10 9 14 14 H 1.09001 * 119.52459 * 4.08388 * 13 11 10 15 15 C 1.54379 * 118.12833 * 160.67136 * 13 11 10 16 16 N 1.48564 * 104.59651 * 87.22781 * 15 13 11 17 17 C 1.46894 * 111.00170 * 200.95804 * 16 15 13 18 18 C 1.50698 * 109.47160 * 189.99785 * 17 16 15 19 19 O 1.21293 * 119.99837 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00168 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99972 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00118 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99990 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47115 * 59.99859 * 25 23 21 27 27 H 1.48504 * 109.47143 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47132 * 299.99916 * 25 23 21 29 29 C 1.52142 * 104.44032 * 320.25801 * 16 15 13 30 30 C 1.53001 * 117.44263 * 175.00316 * 11 10 9 31 31 H 1.09005 * 119.52604 * 355.86031 * 30 11 10 32 32 H 1.09000 * 109.47071 * 266.28020 * 1 2 3 33 33 H 1.09003 * 109.47525 * 26.28739 * 1 2 3 34 34 H 1.09007 * 109.46780 * 146.28629 * 1 2 3 35 35 H 1.08007 * 126.06916 * 179.75115 * 4 3 2 36 36 H 1.07999 * 127.32253 * 179.97438 * 5 4 3 37 37 H 0.96995 * 120.00353 * 355.42563 * 9 7 6 38 38 H 1.09002 * 109.47171 * 60.00331 * 10 9 7 39 39 H 1.08999 * 109.47275 * 299.99975 * 10 9 7 40 40 H 1.08997 * 110.41264 * 206.00937 * 15 13 11 41 41 H 1.08999 * 110.40945 * 328.45197 * 15 13 11 42 42 H 1.08999 * 109.47269 * 310.00765 * 17 16 15 43 43 H 1.09003 * 109.46970 * 70.00519 * 17 16 15 44 44 H 0.96998 * 119.99842 * 0.02562 * 20 18 17 45 45 H 0.97006 * 120.00018 * 180.02562 * 24 23 21 46 46 H 1.09010 * 110.22267 * 281.86524 * 29 16 15 47 47 H 1.09003 * 112.22062 * 158.30196 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0498 0.0000 4 6 3.4734 0.7274 -0.0060 5 6 3.5612 -0.6665 -0.0035 6 6 2.2523 -1.1163 0.0042 7 6 1.7994 -2.5164 0.0099 8 8 0.6137 -2.7717 0.1008 9 7 2.6985 -3.5159 -0.0855 10 6 2.2589 -4.9093 0.0210 11 6 3.4671 -5.8374 -0.1198 12 1 4.4168 -5.4274 0.2237 13 6 3.4994 -6.7727 -1.3303 14 1 2.7118 -6.7071 -2.0810 15 6 4.8585 -7.3721 -1.7508 16 7 4.9901 -8.6085 -0.9376 17 6 6.3948 -9.0264 -0.8386 18 6 6.4680 -10.4005 -0.2242 19 8 5.4499 -10.9753 0.0989 20 7 7.6645 -10.9912 -0.0347 21 6 7.7310 -12.2415 0.5238 22 1 6.8246 -12.7530 0.8123 23 6 8.9646 -12.8502 0.7197 24 7 10.0675 -12.2272 0.3700 25 14 9.0552 -14.5535 1.4813 26 1 8.3111 -15.5164 0.6303 27 1 10.4754 -14.9757 1.5820 28 1 8.4514 -14.5220 2.8376 29 6 4.4467 -8.2226 0.4301 30 6 3.2323 -7.3359 0.0807 31 1 2.2458 -7.6897 0.3805 32 1 -0.3633 -0.0667 1.0255 33 1 -0.3634 0.9214 -0.4551 34 1 -0.3633 -0.8549 -0.5704 35 1 4.3048 1.4169 -0.0111 36 1 4.4595 -1.2661 -0.0074 37 1 3.6367 -3.3127 -0.2247 38 1 1.5404 -5.1251 -0.7697 39 1 1.7897 -5.0690 0.9918 40 1 4.8545 -7.6147 -2.8135 41 1 5.6672 -6.6784 -1.5213 42 1 6.8382 -9.0493 -1.8341 43 1 6.9410 -8.3196 -0.2139 44 1 8.4786 -10.5316 -0.2934 45 1 10.9288 -12.6523 0.5064 46 1 5.1904 -7.6482 0.9826 47 1 4.1298 -9.0910 1.0077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700578563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:21 Heat of formation + Delta-G solvation = 56.822322 kcal Electronic energy + Delta-G solvation = -28813.431356 eV Core-core repulsion = 24613.508234 eV Total energy + Delta-G solvation = -4199.923123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.94725 -40.26421 -39.50334 -37.98524 -35.67418 -34.21268 -33.75361 -33.40553 -31.50591 -31.19368 -28.70853 -28.33765 -27.53535 -26.48342 -24.52201 -23.36539 -22.11178 -21.65821 -21.08605 -20.30202 -20.09586 -19.11213 -18.50297 -17.83806 -16.77249 -16.63730 -16.32364 -15.96979 -15.58462 -15.39046 -14.98472 -14.79192 -14.51334 -14.33111 -14.16761 -13.91182 -13.80066 -13.51241 -13.42851 -13.23832 -12.95749 -12.84527 -12.71291 -12.33246 -11.91656 -11.56529 -11.46288 -11.35792 -11.27822 -11.12240 -10.89139 -10.64660 -10.44228 -10.21862 -10.17935 -10.06476 -9.74781 -9.50834 -9.48130 -9.39885 -8.51355 -8.03591 -7.94726 -6.41136 -3.81894 0.79779 1.91094 2.17315 2.70216 2.75561 3.20346 3.25921 3.30180 3.36853 3.88412 3.95264 4.08071 4.12019 4.16693 4.26903 4.49939 4.64055 4.74140 4.80988 4.82169 4.85358 4.96230 5.07335 5.09678 5.17576 5.21646 5.24439 5.26359 5.31241 5.36076 5.52082 5.59644 5.74566 5.76958 5.82398 5.94299 6.01792 6.02449 6.08060 6.24227 6.27137 6.35562 6.90667 6.92129 7.15727 7.55419 7.55438 7.66617 8.06647 8.62786 9.18941 9.55285 10.07560 10.76617 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026613 B = 0.001515 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.846610 B =18473.152840 C =18982.781123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.257 5.257 3 N -0.278 5.278 4 C -0.002 4.002 5 C -0.188 4.188 6 C -0.040 4.040 7 C 0.592 3.408 8 O -0.540 6.540 9 N -0.709 5.709 10 C 0.156 3.844 11 C -0.148 4.148 12 H 0.108 0.892 13 C -0.151 4.151 14 H 0.119 0.881 15 C 0.059 3.941 16 N -0.483 5.483 17 C 0.032 3.968 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.566 5.566 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.067 3.933 30 C -0.142 4.142 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.188 0.812 36 H 0.162 0.838 37 H 0.406 0.594 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.044 0.956 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 25.411 -2.604 28.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.045 5.045 3 N -0.111 5.111 4 C -0.178 4.178 5 C -0.217 4.217 6 C -0.169 4.169 7 C 0.377 3.623 8 O -0.418 6.418 9 N -0.361 5.361 10 C 0.033 3.967 11 C -0.167 4.167 12 H 0.126 0.874 13 C -0.170 4.170 14 H 0.137 0.863 15 C -0.069 4.069 16 N -0.208 5.208 17 C -0.099 4.099 18 C 0.231 3.769 19 O -0.460 6.460 20 N -0.203 5.203 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 C -0.059 4.059 30 C -0.162 4.162 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.205 0.795 36 H 0.180 0.820 37 H 0.241 0.759 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.553 25.174 -2.535 29.188 hybrid contribution 2.288 -0.443 0.472 2.378 sum -12.265 24.731 -2.063 27.682 Atomic orbital electron populations 1.22331 0.72350 1.05622 1.05014 1.45652 1.08004 1.01684 1.49142 1.73252 1.04493 1.13583 1.19788 1.23615 0.93482 0.95026 1.05660 1.22295 0.95553 0.95739 1.08094 1.21387 0.91584 0.89632 1.14260 1.16868 0.85639 0.83092 0.76700 1.90813 1.16072 1.84581 1.50339 1.45641 1.11228 1.05879 1.73339 1.20897 0.95124 0.77831 1.02842 1.22664 0.99218 0.91872 1.02914 0.87435 1.23576 0.99597 1.02437 0.91393 0.86279 1.22650 0.94121 0.90792 0.99343 1.66243 1.16946 1.27839 1.09725 1.22052 0.89537 0.96839 1.01520 1.19686 0.84539 0.87613 0.85112 1.90514 1.34386 1.65804 1.55263 1.41853 1.06486 1.16924 1.55036 1.19648 0.94255 0.92504 1.36440 0.87989 1.25246 0.94759 1.00043 0.97874 1.69604 0.97951 1.38870 1.48021 0.85923 0.76986 0.81754 0.79581 1.19900 1.21003 1.19954 1.23311 0.93415 0.98158 0.91054 1.23478 1.00982 0.91541 1.00150 0.86245 0.89545 0.88686 0.87511 0.79477 0.82043 0.75885 0.90523 0.90346 0.89508 0.93924 0.89313 0.93217 0.77555 0.91867 0.93791 0.87835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.65 59.85 0.64 1.20 16 2 N -0.26 -2.35 3.75 -63.88 -0.24 -2.59 16 3 N -0.28 -2.63 11.90 30.59 0.36 -2.27 16 4 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 5 C -0.19 -1.29 10.50 -38.98 -0.41 -1.70 16 6 C -0.04 -0.35 6.96 -82.06 -0.57 -0.92 16 7 C 0.59 5.58 7.79 -12.64 -0.10 5.48 16 8 O -0.54 -6.50 14.86 5.25 0.08 -6.42 16 9 N -0.71 -5.13 5.54 -61.47 -0.34 -5.47 16 10 C 0.16 1.23 5.95 -4.04 -0.02 1.21 16 11 C -0.15 -1.23 5.38 -90.61 -0.49 -1.71 16 12 H 0.11 0.83 8.04 -51.93 -0.42 0.41 16 13 C -0.15 -1.51 6.74 -89.24 -0.60 -2.11 16 14 H 0.12 1.09 8.12 -51.93 -0.42 0.67 16 15 C 0.06 0.69 6.27 -2.18 -0.01 0.68 16 16 N -0.48 -7.75 5.03 -228.14 -1.15 -8.89 16 17 C 0.03 0.56 5.32 -4.98 -0.03 0.54 16 18 C 0.45 10.39 7.63 -10.99 -0.08 10.31 16 19 O -0.58 -15.47 14.90 5.55 0.08 -15.39 16 20 N -0.57 -14.21 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 C 0.07 0.99 5.91 -0.11 0.00 0.99 16 30 C -0.14 -1.58 6.75 -89.24 -0.60 -2.18 16 31 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 0.74 6.66 -51.92 -0.35 0.40 16 35 H 0.19 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.16 0.62 7.61 -52.49 -0.40 0.22 16 37 H 0.41 2.02 7.47 -40.82 -0.30 1.72 16 38 H 0.08 0.65 7.94 -51.93 -0.41 0.24 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.45 8.00 -51.93 -0.42 0.03 16 42 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 43 H 0.05 0.78 7.80 -51.93 -0.41 0.37 16 44 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.04 0.61 7.80 -51.92 -0.41 0.20 16 47 H 0.10 1.81 7.41 -51.93 -0.38 1.43 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -34.72 395.31 -9.03 -43.75 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.70 Total: 9.68 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.73 Total: 3.62 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.70 Total: -57.13 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.16 Total: -21.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.72 -9.03 -43.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700578563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.573 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds