Wall clock time and date at job start Wed Apr 1 2020 05:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28448 * 125.18700 * 2 1 4 4 C 1.30861 * 110.92574 * 180.27998 * 3 2 1 5 5 C 1.39673 * 107.86387 * 359.70980 * 4 3 2 6 6 C 1.36599 * 125.19241 * 179.78577 * 2 1 3 7 7 C 1.47155 * 126.88587 * 359.97438 * 6 2 1 8 8 O 1.21629 * 119.99812 * 355.12954 * 7 6 2 9 9 N 1.34773 * 120.00095 * 175.12801 * 7 6 2 10 10 C 1.46503 * 119.99790 * 175.41722 * 9 7 6 11 11 C 1.53002 * 109.46784 * 180.02562 * 10 9 7 12 12 H 1.08998 * 115.52062 * 29.58005 * 11 10 9 13 13 C 1.53007 * 117.40556 * 244.21387 * 11 10 9 14 14 H 1.09001 * 119.52459 * 4.08388 * 13 11 10 15 15 C 1.54379 * 118.12833 * 160.67136 * 13 11 10 16 16 N 1.48564 * 104.59651 * 87.22781 * 15 13 11 17 17 C 1.46894 * 111.00170 * 200.95804 * 16 15 13 18 18 C 1.50698 * 109.47160 * 189.99785 * 17 16 15 19 19 O 1.21293 * 119.99837 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00168 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99972 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00118 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99990 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99828 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00138 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47115 * 59.99859 * 25 23 21 27 27 H 1.48504 * 109.47143 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47132 * 299.99916 * 25 23 21 29 29 C 1.52142 * 104.44032 * 320.25801 * 16 15 13 30 30 C 1.53001 * 117.44263 * 175.00316 * 11 10 9 31 31 H 1.09005 * 119.52604 * 355.86031 * 30 11 10 32 32 H 1.09000 * 109.47071 * 266.28020 * 1 2 3 33 33 H 1.09003 * 109.47525 * 26.28739 * 1 2 3 34 34 H 1.09007 * 109.46780 * 146.28629 * 1 2 3 35 35 H 1.08007 * 126.06916 * 179.75115 * 4 3 2 36 36 H 1.07999 * 127.32253 * 179.97438 * 5 4 3 37 37 H 0.96995 * 120.00353 * 355.42563 * 9 7 6 38 38 H 1.09002 * 109.47171 * 60.00331 * 10 9 7 39 39 H 1.08999 * 109.47275 * 299.99975 * 10 9 7 40 40 H 1.08997 * 110.41264 * 206.00937 * 15 13 11 41 41 H 1.08999 * 110.40945 * 328.45197 * 15 13 11 42 42 H 1.08999 * 109.47269 * 310.00765 * 17 16 15 43 43 H 1.09003 * 109.46970 * 70.00519 * 17 16 15 44 44 H 0.96998 * 119.99842 * 0.02562 * 20 18 17 45 45 H 0.97006 * 120.00018 * 180.02562 * 24 23 21 46 46 H 1.09010 * 110.22267 * 281.86524 * 29 16 15 47 47 H 1.09003 * 112.22062 * 158.30196 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0498 0.0000 4 6 3.4734 0.7274 -0.0060 5 6 3.5612 -0.6665 -0.0035 6 6 2.2523 -1.1163 0.0042 7 6 1.7994 -2.5164 0.0099 8 8 0.6137 -2.7717 0.1008 9 7 2.6985 -3.5159 -0.0855 10 6 2.2589 -4.9093 0.0210 11 6 3.4671 -5.8374 -0.1198 12 1 4.4168 -5.4274 0.2237 13 6 3.4994 -6.7727 -1.3303 14 1 2.7118 -6.7071 -2.0810 15 6 4.8585 -7.3721 -1.7508 16 7 4.9901 -8.6085 -0.9376 17 6 6.3948 -9.0264 -0.8386 18 6 6.4680 -10.4005 -0.2242 19 8 5.4499 -10.9753 0.0989 20 7 7.6645 -10.9912 -0.0347 21 6 7.7310 -12.2415 0.5238 22 1 6.8246 -12.7530 0.8123 23 6 8.9646 -12.8502 0.7197 24 7 10.0675 -12.2272 0.3700 25 14 9.0552 -14.5535 1.4813 26 1 8.3111 -15.5164 0.6303 27 1 10.4754 -14.9757 1.5820 28 1 8.4514 -14.5220 2.8376 29 6 4.4467 -8.2226 0.4301 30 6 3.2323 -7.3359 0.0807 31 1 2.2458 -7.6897 0.3805 32 1 -0.3633 -0.0667 1.0255 33 1 -0.3634 0.9214 -0.4551 34 1 -0.3633 -0.8549 -0.5704 35 1 4.3048 1.4169 -0.0111 36 1 4.4595 -1.2661 -0.0074 37 1 3.6367 -3.3127 -0.2247 38 1 1.5404 -5.1251 -0.7697 39 1 1.7897 -5.0690 0.9918 40 1 4.8545 -7.6147 -2.8135 41 1 5.6672 -6.6784 -1.5213 42 1 6.8382 -9.0493 -1.8341 43 1 6.9410 -8.3196 -0.2139 44 1 8.4786 -10.5316 -0.2934 45 1 10.9288 -12.6523 0.5064 46 1 5.1904 -7.6482 0.9826 47 1 4.1298 -9.0910 1.0077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700578563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:18 Heat of formation + Delta-G solvation = 30.174903 kcal Electronic energy + Delta-G solvation = -28814.586875 eV Core-core repulsion = 24613.508234 eV Total energy + Delta-G solvation = -4201.078641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.51101 -41.17065 -40.38510 -39.68955 -36.58243 -35.89737 -34.85786 -34.11789 -33.22985 -32.12450 -29.79337 -29.33736 -28.10932 -27.66612 -26.17406 -24.11675 -23.04799 -22.33562 -21.87470 -21.23516 -20.85280 -20.79024 -19.83373 -19.10977 -17.71785 -17.39826 -17.31012 -17.05529 -16.58590 -16.40339 -16.16291 -16.09195 -15.82327 -15.35731 -15.28686 -14.78022 -14.74262 -14.47327 -14.40184 -14.28410 -13.88738 -13.74478 -13.50194 -13.47654 -13.28163 -13.13811 -12.94618 -12.53474 -12.42126 -12.25257 -12.13960 -12.08199 -11.85795 -11.47212 -11.39667 -11.00191 -10.89667 -10.41540 -10.29136 -10.07404 -9.99342 -9.98512 -9.30128 -8.44837 -5.93304 0.19027 1.36174 1.40573 1.42294 1.52983 1.63328 2.08052 2.09202 2.11902 2.29569 2.56804 2.83153 3.22004 3.32460 3.42960 3.51763 3.62584 3.70116 4.02280 4.10394 4.15807 4.16658 4.25961 4.28059 4.32349 4.37205 4.44217 4.50992 4.57163 4.59616 4.60837 4.64768 4.69719 4.75930 4.84896 4.97450 5.05097 5.21679 5.25506 5.34870 5.42165 5.54241 5.70623 5.75716 5.91181 6.11287 6.34340 6.63311 6.96983 7.07041 7.15320 7.59293 8.15919 8.72304 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026613 B = 0.001515 C = 0.001475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.846610 B =18473.152840 C =18982.781123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.271 5.271 3 N -0.304 5.304 4 C -0.008 4.008 5 C -0.176 4.176 6 C -0.062 4.062 7 C 0.591 3.409 8 O -0.574 6.574 9 N -0.695 5.695 10 C 0.161 3.839 11 C -0.112 4.112 12 H 0.125 0.875 13 C -0.145 4.145 14 H 0.130 0.870 15 C 0.059 3.941 16 N -0.513 5.513 17 C 0.046 3.954 18 C 0.441 3.559 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.334 4.334 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.066 3.934 30 C -0.159 4.159 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.216 0.784 36 H 0.194 0.806 37 H 0.419 0.581 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.052 0.948 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 27.083 -3.126 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.059 5.059 3 N -0.138 5.138 4 C -0.183 4.183 5 C -0.205 4.205 6 C -0.190 4.190 7 C 0.377 3.623 8 O -0.454 6.454 9 N -0.347 5.347 10 C 0.038 3.962 11 C -0.131 4.131 12 H 0.142 0.858 13 C -0.164 4.164 14 H 0.148 0.852 15 C -0.068 4.068 16 N -0.238 5.238 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.060 4.060 30 C -0.179 4.179 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.233 0.767 36 H 0.211 0.789 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.091 0.909 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.070 0.930 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.289 26.873 -3.075 30.137 hybrid contribution 1.887 -0.929 0.622 2.193 sum -11.402 25.943 -2.453 28.445 Atomic orbital electron populations 1.22402 0.71791 1.06064 1.05259 1.45871 1.08632 1.01758 1.49623 1.73230 1.05602 1.14192 1.20731 1.24213 0.93522 0.95966 1.04597 1.22730 0.95760 0.95825 1.06152 1.21531 0.92560 0.89321 1.15620 1.17004 0.85359 0.83662 0.76244 1.90798 1.17489 1.85056 1.52030 1.45483 1.11697 1.05135 1.72410 1.20785 0.94814 0.78046 1.02602 1.22553 0.99884 0.89992 1.00624 0.85764 1.23635 0.98996 1.02526 0.91215 0.85174 1.22717 0.95677 0.89448 0.98914 1.66167 1.15912 1.30884 1.10883 1.21886 0.91274 0.93107 1.02262 1.20819 0.83246 0.89480 0.83589 1.90486 1.35673 1.67532 1.56622 1.41923 1.07349 1.16528 1.55530 1.19610 0.93987 0.94161 1.38586 0.90486 1.25995 0.94056 1.03361 0.97743 1.69662 0.98294 1.40102 1.48045 0.85015 0.77562 0.77337 0.78571 1.19853 1.19439 1.19791 1.23146 0.95102 0.97290 0.90498 1.23309 0.99534 0.93261 1.01765 0.86319 0.89247 0.87182 0.88275 0.76735 0.78895 0.74273 0.90803 0.90748 0.88836 0.91793 0.87270 0.90918 0.77026 0.91340 0.92971 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.65 127.77 1.36 2.46 16 2 N -0.27 -4.74 3.75 -356.01 -1.33 -6.07 16 3 N -0.30 -5.39 11.90 -57.14 -0.68 -6.07 16 4 C -0.01 -0.10 12.03 85.18 1.02 0.93 16 5 C -0.18 -1.93 10.50 22.66 0.24 -1.69 16 6 C -0.06 -1.00 6.96 40.79 0.28 -0.72 16 7 C 0.59 10.33 7.79 86.59 0.67 11.01 16 8 O -0.57 -13.58 14.86 -4.12 -0.06 -13.64 16 9 N -0.70 -8.24 5.54 -466.63 -2.58 -10.82 16 10 C 0.16 2.17 5.95 86.38 0.51 2.68 16 11 C -0.11 -1.52 5.38 -10.79 -0.06 -1.58 16 12 H 0.12 1.37 8.04 -2.39 -0.02 1.35 16 13 C -0.15 -2.50 6.74 -9.90 -0.07 -2.57 16 14 H 0.13 2.00 8.12 -2.39 -0.02 1.99 16 15 C 0.06 1.22 6.27 86.45 0.54 1.76 16 16 N -0.51 -15.91 5.03 -875.69 -4.40 -20.31 16 17 C 0.05 1.55 5.32 85.56 0.46 2.01 16 18 C 0.44 20.95 7.63 87.66 0.67 21.62 16 19 O -0.62 -34.42 14.90 -3.07 -0.05 -34.46 16 20 N -0.58 -29.41 5.29 -306.99 -1.62 -31.03 16 21 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -49.31 13.05 21.66 0.28 -49.03 16 25 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 26 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 C 0.07 1.94 5.91 85.73 0.51 2.45 16 30 C -0.16 -3.34 6.75 -9.90 -0.07 -3.41 16 31 H 0.12 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.43 6.66 -2.38 -0.02 1.41 16 35 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.19 0.66 7.61 -2.91 -0.02 0.63 16 37 H 0.42 2.61 7.47 -92.71 -0.69 1.92 16 38 H 0.07 1.10 7.94 -2.39 -0.02 1.08 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.07 8.00 -2.39 -0.02 1.05 16 42 H 0.11 3.20 8.08 -2.39 -0.02 3.18 16 43 H 0.07 2.10 7.80 -2.39 -0.02 2.08 16 44 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 45 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16 46 H 0.05 1.39 7.80 -2.38 -0.02 1.37 16 47 H 0.06 2.30 7.41 -2.39 -0.02 2.29 16 Total: -1.00 -77.62 395.31 -1.47 -79.09 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.40 Total: 30.82 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 7.36 Total: 16.61 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -10.34 Total: -123.33 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.11 Total: -48.11 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.62 -1.47 -79.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700578563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.263 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds