Wall clock time and date at job start Wed Apr 1 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 120.00082 * 2 1 4 4 O 1.21517 * 119.99757 * 185.32134 * 3 2 1 5 5 C 1.48149 * 119.99919 * 5.33559 * 3 2 1 6 6 C 1.39717 * 120.18449 * 186.64078 * 5 3 2 7 7 C 1.38823 * 117.89923 * 179.75643 * 6 5 3 8 8 C 1.38571 * 118.07048 * 0.52961 * 7 6 5 9 9 N 1.32180 * 120.06538 * 359.69977 * 8 7 6 10 10 N 1.28347 * 122.29981 * 0.02562 * 9 8 7 11 11 C 1.46498 * 119.99888 * 180.02562 * 2 1 3 12 12 H 1.09004 * 109.47129 * 185.13579 * 11 2 1 13 13 C 1.53001 * 109.47167 * 305.13846 * 11 2 1 14 14 N 1.46904 * 109.47073 * 304.99989 * 13 11 2 15 15 C 1.46897 * 110.99930 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.46828 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00230 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99920 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99950 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00181 * 359.97438 * 19 18 16 21 21 C 1.38960 * 120.00014 * 180.02562 * 19 18 16 22 22 N 1.31405 * 119.99570 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00029 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47236 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47205 * 119.99782 * 23 21 19 26 26 H 1.48496 * 109.46999 * 239.99869 * 23 21 19 27 27 C 1.53000 * 109.47458 * 65.13800 * 11 2 1 28 28 C 1.52997 * 117.49983 * 107.39152 * 27 11 2 29 29 C 1.53004 * 117.50357 * 176.05458 * 27 11 2 30 30 H 1.09004 * 109.47315 * 275.65696 * 1 2 3 31 31 H 1.09004 * 109.47176 * 35.65883 * 1 2 3 32 32 H 1.08998 * 109.47213 * 155.65805 * 1 2 3 33 33 H 1.08005 * 121.04716 * 359.97438 * 6 5 3 34 34 H 1.08001 * 120.96672 * 180.22522 * 7 6 5 35 35 H 1.07998 * 119.96968 * 179.72553 * 8 7 6 36 36 H 1.08998 * 109.46928 * 65.00079 * 13 11 2 37 37 H 1.08999 * 109.47074 * 185.00215 * 13 11 2 38 38 H 1.00897 * 110.99415 * 56.04394 * 14 13 11 39 39 H 1.08990 * 109.47320 * 300.00191 * 15 14 13 40 40 H 1.09005 * 109.46717 * 60.00254 * 15 14 13 41 41 H 0.97001 * 119.99785 * 0.02562 * 18 16 15 42 42 H 0.97003 * 119.99557 * 180.02562 * 22 21 19 43 43 H 1.09001 * 115.54798 * 321.72739 * 27 11 2 44 44 H 1.08998 * 117.50240 * 215.00208 * 28 27 11 45 45 H 1.09002 * 117.50274 * 0.02974 * 28 27 11 46 46 H 1.08995 * 117.49329 * 359.97393 * 29 27 11 47 47 H 1.08998 * 117.49905 * 144.99604 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1694 -0.0976 5 6 1.4029 2.4474 0.1193 6 6 2.0794 3.6621 -0.0190 7 6 1.3424 4.8329 0.0965 8 6 -0.0152 4.7261 0.3527 9 7 -0.5746 3.5347 0.4741 10 7 0.0977 2.4470 0.3636 11 6 2.1974 -1.2687 -0.0006 12 1 3.2655 -1.0717 0.0915 13 6 1.7334 -2.1260 1.1787 14 7 1.8819 -1.3645 2.4261 15 6 1.4444 -2.1578 3.5824 16 6 1.6105 -1.3453 4.8407 17 8 2.0497 -0.2163 4.7801 18 7 1.2711 -1.8732 6.0335 19 6 1.4227 -1.1343 7.1782 20 1 1.8145 -0.1293 7.1244 21 6 1.0733 -1.6788 8.4080 22 7 0.5970 -2.9017 8.4736 23 14 1.2792 -0.6717 9.9677 24 1 1.8300 0.6642 9.6253 25 1 -0.0401 -0.5088 10.6296 26 1 2.2119 -1.3700 10.8883 27 6 1.9272 -2.0131 -1.3097 28 6 3.0606 -2.0719 -2.3358 29 6 2.6784 -3.3252 -1.5444 30 1 -0.3634 0.1013 1.0227 31 1 -0.3634 0.8350 -0.5991 32 1 -0.3633 -0.9363 -0.4236 33 1 3.1415 3.6892 -0.2131 34 1 1.8144 5.7989 -0.0053 35 1 -0.6170 5.6173 0.4528 36 1 0.6867 -2.3973 1.0410 37 1 2.3394 -3.0306 1.2309 38 1 1.3811 -0.4899 2.3775 39 1 0.3958 -2.4289 3.4612 40 1 2.0481 -3.0628 3.6515 41 1 0.9202 -2.7762 6.0820 42 1 0.3527 -3.2816 9.3320 43 1 0.9079 -1.9419 -1.6892 44 1 2.7869 -2.0395 -3.3904 45 1 3.9989 -1.5807 -2.0781 46 1 3.3654 -3.6579 -0.7663 47 1 2.1532 -4.1172 -2.0783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700732705.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:18:28 Heat of formation + Delta-G solvation = 40.094838 kcal Electronic energy + Delta-G solvation = -30552.185657 eV Core-core repulsion = 26351.537176 eV Total energy + Delta-G solvation = -4200.648481 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48654 -39.98426 -38.27243 -37.81814 -35.79836 -34.69438 -33.77200 -33.41055 -32.84253 -31.19041 -29.67581 -27.12526 -26.55266 -25.29478 -24.83107 -24.10585 -22.84800 -22.06675 -21.26984 -19.69053 -19.12340 -18.28600 -17.85485 -17.40468 -16.95444 -16.74036 -16.20349 -15.89926 -15.41589 -15.34129 -14.81759 -14.67220 -14.44140 -14.24029 -13.98140 -13.79275 -13.53975 -13.53180 -13.28156 -12.91621 -12.65847 -12.52984 -12.16071 -11.88209 -11.68499 -11.55125 -11.47821 -11.39932 -11.18249 -11.00400 -10.65228 -10.57111 -10.33762 -10.32137 -10.23515 -10.18256 -10.03629 -9.94598 -9.48734 -8.79002 -8.39481 -8.00832 -7.91927 -6.38659 -3.79007 0.21048 0.46833 2.49989 2.64855 3.18487 3.28628 3.36268 3.38849 3.56373 3.67236 3.95028 4.07972 4.12036 4.23249 4.28100 4.39006 4.60344 4.67239 4.73010 4.77266 4.79057 5.08209 5.11841 5.15904 5.19824 5.28552 5.34527 5.40807 5.46996 5.54514 5.57988 5.65699 5.70137 5.75553 5.78307 5.85206 5.94142 5.95845 6.01041 6.09962 6.30371 6.44746 7.16134 7.24570 7.58529 7.69609 7.90229 8.10191 8.29032 8.65301 9.21606 9.58129 10.10162 10.79315 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.003053 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.076278 B = 9170.478750 C =11563.777820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.585 5.585 3 C 0.580 3.420 4 O -0.522 6.522 5 C 0.028 3.972 6 C -0.064 4.064 7 C -0.122 4.122 8 C 0.055 3.945 9 N -0.245 5.245 10 N -0.203 5.203 11 C 0.174 3.826 12 H 0.111 0.889 13 C 0.054 3.946 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.564 5.564 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.166 4.166 28 C -0.173 4.173 29 C -0.170 4.170 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.033 0.967 37 H 0.085 0.915 38 H 0.349 0.651 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.270 0.730 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 6.337 -23.504 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.316 5.316 3 C 0.365 3.635 4 O -0.396 6.396 5 C -0.117 4.117 6 C -0.093 4.093 7 C -0.152 4.152 8 C -0.108 4.108 9 N -0.088 5.088 10 N -0.050 5.050 11 C 0.070 3.930 12 H 0.129 0.871 13 C -0.077 4.077 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.466 6.466 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.186 4.186 28 C -0.210 4.210 29 C -0.207 4.207 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.194 0.806 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.169 0.831 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.250 5.938 -23.059 23.844 hybrid contribution -0.010 0.756 0.641 0.991 sum -1.259 6.694 -22.419 23.431 Atomic orbital electron populations 1.22141 0.78169 1.02582 1.03336 1.47602 1.07711 1.05091 1.71241 1.17514 0.86372 0.82505 0.77087 1.90792 1.12851 1.86382 1.49620 1.22833 0.93324 0.95584 0.99982 1.22438 1.02754 0.91287 0.92852 1.22460 0.95030 1.00173 0.97487 1.24502 0.94176 0.98583 0.93518 1.73185 1.30698 0.95465 1.09428 1.73658 1.04977 1.20172 1.06201 1.20781 0.98674 0.81598 0.91909 0.87072 1.22258 0.99525 0.96783 0.89109 1.60036 1.62829 1.06753 1.00343 1.21671 0.98607 0.97082 0.90792 1.19822 0.84638 0.88351 0.84510 1.90531 1.49789 1.19806 1.86452 1.41856 1.56763 1.16404 1.05108 1.19748 1.40050 0.99430 0.83466 0.87962 1.25250 0.97081 0.96245 0.99400 1.69621 1.43860 1.14309 1.26590 0.85810 0.77855 0.79764 0.80982 1.19261 1.20771 1.20740 1.22561 0.97785 1.00894 0.97320 1.23016 0.99450 1.01705 0.96872 1.22950 1.03414 0.90996 1.03350 0.91661 0.89279 0.91562 0.82017 0.82475 0.80613 0.94902 0.89663 0.83097 0.93907 0.89526 0.77477 0.91971 0.87502 0.88983 0.88379 0.88263 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 7.85 59.84 0.47 1.35 16 2 N -0.59 -7.46 1.90 -174.93 -0.33 -7.79 16 3 C 0.58 8.46 7.65 -12.19 -0.09 8.36 16 4 O -0.52 -8.80 15.77 5.35 0.08 -8.72 16 5 C 0.03 0.37 6.63 -82.83 -0.55 -0.18 16 6 C -0.06 -0.66 9.73 -38.81 -0.38 -1.03 16 7 C -0.12 -0.91 10.20 -39.24 -0.40 -1.31 16 8 C 0.05 0.46 11.31 -17.28 -0.20 0.26 16 9 N -0.25 -2.97 11.51 30.59 0.35 -2.62 16 10 N -0.20 -2.67 7.42 33.32 0.25 -2.42 16 11 C 0.17 2.12 2.49 -67.93 -0.17 1.95 16 12 H 0.11 1.62 6.73 -51.93 -0.35 1.27 16 13 C 0.05 0.69 4.76 -3.82 -0.02 0.67 16 14 N -0.67 -11.66 6.12 -115.06 -0.70 -12.36 16 15 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 16 C 0.44 10.90 7.82 -10.98 -0.09 10.82 16 17 O -0.58 -16.64 15.78 5.55 0.09 -16.56 16 18 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 19 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 20 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.97 13.05 55.50 0.72 -24.25 16 23 Si 0.93 21.52 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.17 -1.57 5.10 -90.62 -0.46 -2.03 16 28 C -0.17 -1.55 10.18 -26.69 -0.27 -1.82 16 29 C -0.17 -1.39 9.86 -26.69 -0.26 -1.65 16 30 H 0.06 0.82 7.63 -51.93 -0.40 0.42 16 31 H 0.09 0.96 5.82 -51.93 -0.30 0.66 16 32 H 0.07 0.58 6.67 -51.93 -0.35 0.24 16 33 H 0.16 1.47 7.73 -52.48 -0.41 1.06 16 34 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 35 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.03 0.38 7.60 -51.93 -0.39 -0.01 16 37 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 38 H 0.35 6.61 7.02 -39.29 -0.28 6.34 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.39 9.75 7.90 -40.82 -0.32 9.42 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.11 0.93 7.02 -51.93 -0.36 0.56 16 44 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.97 8.07 -51.93 -0.42 0.56 16 46 H 0.10 0.83 7.91 -51.93 -0.41 0.42 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -35.60 394.63 -7.80 -43.40 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -6.44 Total: 15.55 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.69 Total: 8.13 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: 0.23 Total: -64.25 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.17 Total: -25.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.60 -7.80 -43.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700732705.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.497 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds