Wall clock time and date at job start Wed Apr 1 2020 05:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00419 * 2 1 4 4 C 1.52998 * 109.47631 * 270.00172 * 3 2 1 5 5 O 1.42902 * 109.47058 * 64.99580 * 4 3 2 6 6 C 1.42896 * 114.00124 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47136 * 64.99643 * 7 6 5 9 9 C 1.36941 * 119.99906 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.38804 * 119.99868 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00181 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00020 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47283 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47279 * 210.00132 * 13 11 9 16 16 H 1.48505 * 109.47023 * 329.99989 * 13 11 9 17 17 C 1.34782 * 119.99932 * 180.02562 * 2 1 3 18 18 O 1.21568 * 120.00251 * 184.88259 * 17 2 1 19 19 C 1.47719 * 119.99741 * 4.88041 * 17 2 1 20 20 C 1.40261 * 119.87873 * 140.69127 * 19 17 2 21 21 C 1.36160 * 120.55510 * 180.31735 * 20 19 17 22 22 C 1.39917 * 119.97802 * 359.42241 * 21 20 19 23 23 N 1.34742 * 134.59518 * 180.25502 * 22 21 20 24 24 N 1.28639 * 109.29583 * 180.02562 * 23 22 21 25 25 N 1.28811 * 111.78854 * 359.97438 * 24 23 22 26 26 C 1.46511 * 125.93911 * 180.02562 * 25 24 23 27 27 C 1.37364 * 108.11820 * 0.02562 * 25 24 23 28 28 C 1.38616 * 134.88887 * 179.97438 * 27 25 24 29 29 H 1.08997 * 109.47251 * 265.76215 * 1 2 3 30 30 H 1.08997 * 109.46789 * 25.75847 * 1 2 3 31 31 H 1.09000 * 109.47322 * 145.75631 * 1 2 3 32 32 H 1.09008 * 109.46956 * 30.00232 * 3 2 1 33 33 H 1.09006 * 109.47405 * 149.99838 * 3 2 1 34 34 H 1.08998 * 109.47303 * 184.99723 * 4 3 2 35 35 H 1.09001 * 109.46701 * 305.00288 * 4 3 2 36 36 H 1.08998 * 109.47059 * 300.00447 * 6 5 4 37 37 H 1.09000 * 109.47089 * 60.00051 * 6 5 4 38 38 H 1.09002 * 109.47434 * 185.00161 * 7 6 5 39 39 H 1.09006 * 109.46827 * 304.99852 * 7 6 5 40 40 H 0.96994 * 119.99761 * 0.02562 * 8 7 6 41 41 H 0.97001 * 120.00192 * 179.97438 * 12 11 9 42 42 H 1.08002 * 119.72264 * 0.02562 * 20 19 17 43 43 H 1.08000 * 120.01148 * 179.69182 * 21 20 19 44 44 H 1.08998 * 109.46856 * 90.02595 * 26 25 24 45 45 H 1.09001 * 109.46665 * 210.02502 * 26 25 24 46 46 H 1.08998 * 109.46987 * 330.02569 * 26 25 24 47 47 H 1.08005 * 120.24847 * 0.06453 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 8 1.2061 1.9936 -2.0813 6 6 1.3325 2.4166 -3.4404 7 6 -0.0564 2.6910 -4.0204 8 7 -0.6644 3.8232 -3.3170 9 6 -1.9167 4.2535 -3.6661 10 1 -2.4563 3.7580 -4.4597 11 6 -2.4926 5.3266 -3.0000 12 7 -1.8348 5.9308 -2.0332 13 14 -4.2011 5.9132 -3.4757 14 1 -5.2157 5.1883 -2.6694 15 1 -4.3134 7.3713 -3.2179 16 1 -4.4323 5.6463 -4.9182 17 6 2.1389 -1.1673 -0.0005 18 8 3.3512 -1.1693 0.0891 19 6 1.4042 -2.4441 -0.1099 20 6 1.9269 -3.4864 -0.8895 21 6 1.2581 -4.6668 -1.0052 22 6 0.0448 -4.8516 -0.3333 23 7 -0.8376 -5.8652 -0.2355 24 7 -1.8108 -5.5095 0.5267 25 7 -1.6593 -4.3083 0.9666 26 6 -2.5802 -3.5956 1.8557 27 6 -0.4841 -3.8120 0.4571 28 6 0.1992 -2.6109 0.5660 29 1 -0.3633 -0.0759 1.0248 30 1 -0.3633 0.9255 -0.4466 31 1 -0.3634 -0.8495 -0.5783 32 1 1.6085 2.0284 0.5139 33 1 3.1500 1.1383 0.5139 34 1 3.0733 2.6064 -1.4437 35 1 2.9642 0.9131 -1.9815 36 1 1.9302 3.3270 -3.4835 37 1 1.8208 1.6337 -4.0207 38 1 0.0328 2.9274 -5.0807 39 1 -0.6828 1.8075 -3.8966 40 1 -0.1800 4.2679 -2.6041 41 1 -2.2370 6.6809 -1.5680 42 1 2.8655 -3.3499 -1.4062 43 1 1.6662 -5.4617 -1.6118 44 1 -2.3008 -3.7815 2.8927 45 1 -2.5276 -2.5262 1.6513 46 1 -3.5970 -3.9488 1.6843 47 1 -0.2005 -1.8104 1.1710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701039801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:52 Heat of formation + Delta-G solvation = 67.694636 kcal Electronic energy + Delta-G solvation = -30203.904660 eV Core-core repulsion = 26004.452997 eV Total energy + Delta-G solvation = -4199.451664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.52321 -40.46371 -38.07811 -37.50548 -35.82476 -35.23304 -34.41552 -31.94441 -31.27628 -31.09425 -29.67044 -28.27176 -27.65752 -26.85342 -24.80065 -24.02023 -23.53530 -22.68893 -21.49527 -21.17099 -20.03708 -18.48559 -17.69822 -17.30654 -17.18837 -17.06778 -16.41418 -16.28443 -15.84616 -15.32691 -15.20529 -14.74293 -14.54240 -14.20308 -14.05793 -13.89546 -13.58759 -13.33634 -13.13118 -13.02540 -12.98205 -12.74760 -12.51030 -12.45064 -12.25124 -12.01933 -11.82067 -11.69512 -11.43091 -11.13185 -11.03274 -10.93490 -10.83561 -10.53027 -10.15660 -10.04300 -9.73149 -9.32900 -9.27931 -8.90368 -8.81136 -8.69867 -6.91232 -5.76441 -3.04500 0.00633 0.84357 1.75625 1.81450 2.49786 2.77988 3.29422 3.41637 3.47148 3.48768 3.54891 3.95512 4.03360 4.14892 4.22980 4.52358 4.57809 4.58747 4.68677 4.82524 4.88641 4.98684 5.05194 5.08116 5.20838 5.31730 5.39509 5.44716 5.50726 5.54469 5.56934 5.58958 5.67928 5.76624 5.80360 5.86825 5.90278 5.94792 6.08730 6.19944 6.32110 6.34314 6.58461 6.72195 7.14454 7.54269 7.68747 7.89100 7.95898 8.42300 9.53921 10.12364 10.48562 11.46322 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.002615 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.806328 B =10704.907993 C =12308.608977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.044 3.956 5 O -0.371 6.371 6 C 0.059 3.941 7 C 0.155 3.845 8 N -0.727 5.727 9 C -0.238 4.238 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.932 5.932 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 C 0.560 3.440 18 O -0.534 6.534 19 C -0.091 4.091 20 C -0.070 4.070 21 C -0.055 4.055 22 C 0.026 3.974 23 N -0.258 5.258 24 N -0.016 5.016 25 N -0.315 5.315 26 C 0.085 3.915 27 C 0.014 3.986 28 C -0.067 4.067 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.042 0.958 38 H 0.032 0.968 39 H 0.025 0.975 40 H 0.387 0.613 41 H 0.254 0.746 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.093 -18.857 8.517 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.327 5.327 3 C -0.004 4.004 4 C -0.034 4.034 5 O -0.290 6.290 6 C -0.018 4.018 7 C 0.027 3.973 8 N -0.372 5.372 9 C -0.369 4.369 10 H 0.087 0.913 11 C -0.210 4.210 12 N -0.581 5.581 13 Si 0.737 3.263 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.348 3.652 18 O -0.412 6.412 19 C -0.098 4.098 20 C -0.092 4.092 21 C -0.077 4.077 22 C -0.099 4.099 23 N -0.132 5.132 24 N 0.004 4.996 25 N -0.116 5.116 26 C -0.056 4.056 27 C -0.104 4.104 28 C -0.089 4.089 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.221 0.779 41 H 0.064 0.936 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.124 0.876 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.422 -20.046 8.632 22.488 hybrid contribution -0.230 1.587 -0.031 1.604 sum 5.192 -18.458 8.600 21.015 Atomic orbital electron populations 1.22253 0.78700 1.05597 1.00786 1.47665 1.07651 1.05486 1.71853 1.21636 0.98451 0.84339 0.95968 1.22860 0.87670 0.99196 0.93671 1.87987 1.27764 1.87522 1.25756 1.22776 0.99259 0.97466 0.82276 1.20685 0.90232 0.91842 0.94530 1.42286 1.17711 1.34846 1.42330 1.19235 0.92610 1.10717 1.14346 0.91305 1.24721 0.98591 0.98909 0.98791 1.69672 1.37699 1.24885 1.25875 0.86208 0.84454 0.77808 0.77829 1.21793 1.21806 1.20801 1.18165 0.86963 0.83364 0.76757 1.90795 1.13298 1.87161 1.49964 1.19737 0.94612 0.95295 1.00148 1.20760 0.99946 0.91064 0.97407 1.19945 0.91266 0.98029 0.98490 1.20095 0.97904 0.90997 1.00950 1.75368 0.99889 1.23584 1.14375 1.78000 1.18744 0.95835 1.07055 1.47146 1.16932 1.11062 1.36456 1.22318 0.93208 0.97354 0.92739 1.19584 0.90394 0.98185 1.02241 1.20513 0.93461 0.94527 1.00443 0.92762 0.88338 0.90896 0.88839 0.88311 0.92372 0.93521 0.93360 0.93963 0.95084 0.95721 0.77940 0.93608 0.83656 0.83700 0.89011 0.88060 0.87586 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 8.66 59.85 0.52 1.22 16 2 N -0.60 -6.84 2.84 -182.74 -0.52 -7.36 16 3 C 0.12 1.37 5.83 -4.04 -0.02 1.35 16 4 C 0.04 0.57 6.28 37.16 0.23 0.81 16 5 O -0.37 -6.05 9.19 -35.23 -0.32 -6.38 16 6 C 0.06 0.97 6.07 37.16 0.23 1.19 16 7 C 0.15 3.11 6.65 -4.04 -0.03 3.08 16 8 N -0.73 -18.35 5.55 -59.91 -0.33 -18.68 16 9 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 13 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.56 6.88 7.34 -12.38 -0.09 6.79 16 18 O -0.53 -7.98 16.45 5.31 0.09 -7.89 16 19 C -0.09 -0.96 5.23 -104.92 -0.55 -1.51 16 20 C -0.07 -0.68 9.54 -39.57 -0.38 -1.06 16 21 C -0.06 -0.53 10.03 -39.70 -0.40 -0.93 16 22 C 0.03 0.30 7.36 -84.95 -0.63 -0.32 16 23 N -0.26 -3.34 12.42 32.09 0.40 -2.94 16 24 N -0.02 -0.18 13.07 60.35 0.79 0.61 16 25 N -0.32 -2.92 3.80 -65.54 -0.25 -3.17 16 26 C 0.08 0.36 11.41 59.85 0.68 1.04 16 27 C 0.01 0.15 6.93 -84.24 -0.58 -0.44 16 28 C -0.07 -0.61 7.55 -39.10 -0.30 -0.91 16 29 H 0.05 0.41 6.90 -51.93 -0.36 0.05 16 30 H 0.10 1.26 7.20 -51.93 -0.37 0.89 16 31 H 0.07 0.71 5.81 -51.93 -0.30 0.41 16 32 H 0.09 1.05 8.07 -51.92 -0.42 0.63 16 33 H 0.10 1.08 7.36 -51.93 -0.38 0.70 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.39 10.33 7.67 -40.82 -0.31 10.02 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.15 1.26 8.04 -52.49 -0.42 0.84 16 43 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.15 1.01 5.33 -52.48 -0.28 0.73 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -35.72 395.49 -6.67 -42.39 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.62 Total: 4.45 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -1.56 Total: 3.04 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.81 Total: -58.66 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.24 Total: -14.27 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.72 -6.67 -42.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701039801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.086 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds