Wall clock time and date at job start Wed Apr 1 2020 05:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00419 * 2 1 4 4 C 1.52998 * 109.47631 * 270.00172 * 3 2 1 5 5 O 1.42902 * 109.47058 * 64.99580 * 4 3 2 6 6 C 1.42896 * 114.00124 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.47136 * 64.99643 * 7 6 5 9 9 C 1.36941 * 119.99906 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99685 * 0.02562 * 9 8 7 11 11 C 1.38804 * 119.99868 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00181 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00020 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47283 * 89.99863 * 13 11 9 15 15 H 1.48503 * 109.47279 * 210.00132 * 13 11 9 16 16 H 1.48505 * 109.47023 * 329.99989 * 13 11 9 17 17 C 1.34782 * 119.99932 * 180.02562 * 2 1 3 18 18 O 1.21568 * 120.00251 * 184.88259 * 17 2 1 19 19 C 1.47719 * 119.99741 * 4.88041 * 17 2 1 20 20 C 1.40261 * 119.87873 * 140.69127 * 19 17 2 21 21 C 1.36160 * 120.55510 * 180.31735 * 20 19 17 22 22 C 1.39917 * 119.97802 * 359.42241 * 21 20 19 23 23 N 1.34742 * 134.59518 * 180.25502 * 22 21 20 24 24 N 1.28639 * 109.29583 * 180.02562 * 23 22 21 25 25 N 1.28811 * 111.78854 * 359.97438 * 24 23 22 26 26 C 1.46511 * 125.93911 * 180.02562 * 25 24 23 27 27 C 1.37364 * 108.11820 * 0.02562 * 25 24 23 28 28 C 1.38616 * 134.88887 * 179.97438 * 27 25 24 29 29 H 1.08997 * 109.47251 * 265.76215 * 1 2 3 30 30 H 1.08997 * 109.46789 * 25.75847 * 1 2 3 31 31 H 1.09000 * 109.47322 * 145.75631 * 1 2 3 32 32 H 1.09008 * 109.46956 * 30.00232 * 3 2 1 33 33 H 1.09006 * 109.47405 * 149.99838 * 3 2 1 34 34 H 1.08998 * 109.47303 * 184.99723 * 4 3 2 35 35 H 1.09001 * 109.46701 * 305.00288 * 4 3 2 36 36 H 1.08998 * 109.47059 * 300.00447 * 6 5 4 37 37 H 1.09000 * 109.47089 * 60.00051 * 6 5 4 38 38 H 1.09002 * 109.47434 * 185.00161 * 7 6 5 39 39 H 1.09006 * 109.46827 * 304.99852 * 7 6 5 40 40 H 0.96994 * 119.99761 * 0.02562 * 8 7 6 41 41 H 0.97001 * 120.00192 * 179.97438 * 12 11 9 42 42 H 1.08002 * 119.72264 * 0.02562 * 20 19 17 43 43 H 1.08000 * 120.01148 * 179.69182 * 21 20 19 44 44 H 1.08998 * 109.46856 * 90.02595 * 26 25 24 45 45 H 1.09001 * 109.46665 * 210.02502 * 26 25 24 46 46 H 1.08998 * 109.46987 * 330.02569 * 26 25 24 47 47 H 1.08005 * 120.24847 * 0.06453 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 8 1.2061 1.9936 -2.0813 6 6 1.3325 2.4166 -3.4404 7 6 -0.0564 2.6910 -4.0204 8 7 -0.6644 3.8232 -3.3170 9 6 -1.9167 4.2535 -3.6661 10 1 -2.4563 3.7580 -4.4597 11 6 -2.4926 5.3266 -3.0000 12 7 -1.8348 5.9308 -2.0332 13 14 -4.2011 5.9132 -3.4757 14 1 -5.2157 5.1883 -2.6694 15 1 -4.3134 7.3713 -3.2179 16 1 -4.4323 5.6463 -4.9182 17 6 2.1389 -1.1673 -0.0005 18 8 3.3512 -1.1693 0.0891 19 6 1.4042 -2.4441 -0.1099 20 6 1.9269 -3.4864 -0.8895 21 6 1.2581 -4.6668 -1.0052 22 6 0.0448 -4.8516 -0.3333 23 7 -0.8376 -5.8652 -0.2355 24 7 -1.8108 -5.5095 0.5267 25 7 -1.6593 -4.3083 0.9666 26 6 -2.5802 -3.5956 1.8557 27 6 -0.4841 -3.8120 0.4571 28 6 0.1992 -2.6109 0.5660 29 1 -0.3633 -0.0759 1.0248 30 1 -0.3633 0.9255 -0.4466 31 1 -0.3634 -0.8495 -0.5783 32 1 1.6085 2.0284 0.5139 33 1 3.1500 1.1383 0.5139 34 1 3.0733 2.6064 -1.4437 35 1 2.9642 0.9131 -1.9815 36 1 1.9302 3.3270 -3.4835 37 1 1.8208 1.6337 -4.0207 38 1 0.0328 2.9274 -5.0807 39 1 -0.6828 1.8075 -3.8966 40 1 -0.1800 4.2679 -2.6041 41 1 -2.2370 6.6809 -1.5680 42 1 2.8655 -3.3499 -1.4062 43 1 1.6662 -5.4617 -1.6118 44 1 -2.3008 -3.7815 2.8927 45 1 -2.5276 -2.5262 1.6513 46 1 -3.5970 -3.9488 1.6843 47 1 -0.2005 -1.8104 1.1710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001701039801.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:51 Heat of formation + Delta-G solvation = 42.589058 kcal Electronic energy + Delta-G solvation = -30204.993320 eV Core-core repulsion = 26004.452997 eV Total energy + Delta-G solvation = -4200.540323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.29303 -41.37505 -39.15836 -38.46146 -36.90174 -36.21110 -35.88373 -33.46820 -32.46521 -31.89292 -30.73417 -29.27549 -28.76935 -27.76969 -25.69980 -25.43207 -24.82666 -23.59245 -22.77289 -22.20473 -20.90721 -19.28779 -19.22539 -18.42763 -18.22277 -17.79207 -17.41929 -17.39489 -16.93909 -16.63271 -16.13887 -16.00472 -15.55934 -15.47144 -15.18156 -14.78945 -14.65646 -14.42121 -14.25129 -14.07703 -13.92785 -13.73845 -13.45550 -13.25972 -13.18438 -13.12942 -12.95513 -12.77408 -12.74072 -12.66284 -12.50842 -12.12185 -11.89989 -11.83849 -11.78472 -11.67639 -11.11557 -10.94524 -10.48391 -10.13937 -9.73817 -9.43226 -8.95767 -7.91075 -5.19355 -0.76836 0.08437 0.98246 1.17430 1.49609 1.50775 1.59324 1.59630 1.90839 2.50669 2.58598 2.79249 2.80804 3.32865 3.42698 3.43198 3.56974 3.85956 3.94154 3.98214 4.07961 4.14453 4.20934 4.28169 4.29477 4.33106 4.40748 4.48294 4.49994 4.56734 4.58442 4.60121 4.68164 4.73546 4.80224 4.86771 4.97676 5.04698 5.07345 5.14939 5.15989 5.39845 5.41905 5.50969 5.51490 6.21852 6.30130 6.37830 6.96376 7.15359 7.37568 8.13181 8.38216 9.32274 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.010243 B = 0.002615 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.806328 B =10704.907993 C =12308.608977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.594 5.594 3 C 0.119 3.881 4 C 0.044 3.956 5 O -0.390 6.390 6 C 0.067 3.933 7 C 0.152 3.848 8 N -0.739 5.739 9 C -0.245 4.245 10 H 0.074 0.926 11 C -0.073 4.073 12 N -0.967 5.967 13 Si 0.971 3.029 14 H -0.286 1.286 15 H -0.296 1.296 16 H -0.271 1.271 17 C 0.562 3.438 18 O -0.566 6.566 19 C -0.106 4.106 20 C -0.070 4.070 21 C -0.058 4.058 22 C 0.008 3.992 23 N -0.292 5.292 24 N -0.032 5.032 25 N -0.303 5.303 26 C 0.068 3.932 27 C 0.005 3.995 28 C -0.051 4.051 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.022 0.978 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 -19.056 8.772 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.325 5.325 3 C -0.003 4.003 4 C -0.033 4.033 5 O -0.310 6.310 6 C -0.009 4.009 7 C 0.025 3.975 8 N -0.382 5.382 9 C -0.376 4.376 10 H 0.092 0.908 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.800 3.200 14 H -0.213 1.213 15 H -0.223 1.223 16 H -0.196 1.196 17 C 0.351 3.649 18 O -0.446 6.446 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.080 4.080 22 C -0.119 4.119 23 N -0.165 5.165 24 N -0.012 5.012 25 N -0.105 5.105 26 C -0.070 4.070 27 C -0.114 4.114 28 C -0.073 4.073 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.171 0.829 43 H 0.180 0.820 44 H 0.130 0.870 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.735 -20.281 8.866 22.635 hybrid contribution -0.027 1.621 -0.091 1.624 sum 4.708 -18.659 8.775 21.150 Atomic orbital electron populations 1.22308 0.77869 1.04345 1.02610 1.47735 1.08184 1.05291 1.71273 1.21643 0.98996 0.84542 0.95156 1.22982 0.86586 0.99650 0.94109 1.87960 1.29661 1.87624 1.25724 1.22621 0.96928 0.98493 0.82896 1.20843 0.92012 0.89907 0.94714 1.42463 1.17211 1.36075 1.42438 1.19624 0.93595 1.10467 1.13950 0.90847 1.25516 1.02362 0.99483 0.99203 1.69823 1.39310 1.25434 1.27190 0.85175 0.80065 0.76737 0.77979 1.21287 1.22285 1.19645 1.18337 0.86607 0.83864 0.76071 1.90776 1.14621 1.87601 1.51596 1.19702 0.95343 0.94818 1.01393 1.20872 1.00173 0.90898 0.97253 1.20123 0.90787 0.98498 0.98553 1.20467 0.98493 0.91269 1.01640 1.75313 1.00761 1.24744 1.15695 1.77915 1.18824 0.97029 1.07480 1.47557 1.16873 1.10353 1.35669 1.22831 0.93018 0.98170 0.92986 1.19721 0.90922 0.98294 1.02462 1.20638 0.92526 0.94538 0.99609 0.89600 0.90977 0.90406 0.88520 0.87586 0.91411 0.93504 0.93434 0.91107 0.94238 0.95962 0.79174 0.94068 0.82928 0.81964 0.86960 0.85963 0.86385 0.81302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.31 8.66 127.77 1.11 2.42 16 2 N -0.59 -12.79 2.84 -850.34 -2.41 -15.20 16 3 C 0.12 2.62 5.83 86.38 0.50 3.12 16 4 C 0.04 1.10 6.28 71.98 0.45 1.55 16 5 O -0.39 -12.34 9.19 -148.98 -1.37 -13.71 16 6 C 0.07 2.11 6.07 71.98 0.44 2.54 16 7 C 0.15 5.94 6.65 86.38 0.57 6.51 16 8 N -0.74 -37.11 5.55 -343.44 -1.91 -39.02 16 9 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 10 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 11 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 12 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 13 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 14 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C 0.56 13.12 7.34 86.75 0.64 13.75 16 18 O -0.57 -16.47 16.45 -3.93 -0.06 -16.53 16 19 C -0.11 -2.09 5.23 -20.06 -0.10 -2.20 16 20 C -0.07 -1.31 9.54 22.28 0.21 -1.10 16 21 C -0.06 -1.07 10.03 22.19 0.22 -0.85 16 22 C 0.01 0.18 7.36 39.76 0.29 0.47 16 23 N -0.29 -7.54 12.42 -52.38 -0.65 -8.19 16 24 N -0.03 -0.73 13.07 37.02 0.48 -0.24 16 25 N -0.30 -5.14 3.80 -361.25 -1.37 -6.51 16 26 C 0.07 0.41 11.41 127.77 1.46 1.86 16 27 C 0.01 0.10 6.93 39.02 0.27 0.37 16 28 C -0.05 -0.83 7.55 22.58 0.17 -0.66 16 29 H 0.09 1.03 6.90 -2.39 -0.02 1.02 16 30 H 0.07 1.78 7.20 -2.39 -0.02 1.76 16 31 H 0.08 1.36 5.81 -2.39 -0.01 1.35 16 32 H 0.10 2.07 8.07 -2.38 -0.02 2.05 16 33 H 0.11 2.20 7.36 -2.38 -0.02 2.18 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.38 20.23 7.67 -92.71 -0.71 19.52 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.15 2.54 8.04 -2.91 -0.02 2.52 16 43 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.17 1.81 5.33 -2.91 -0.02 1.79 16 Total: -1.00 -76.79 395.49 2.85 -73.94 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.29 Total: 24.54 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 7.54 Total: 11.50 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -5.58 Total: -126.92 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.43 Total: -30.24 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.79 2.85 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701039801.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.526 kcal (2) G-P(sol) polarization free energy of solvation -76.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds