Wall clock time and date at job start Wed Apr 1 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99865 * 2 1 4 4 C 1.52992 * 109.47859 * 293.95839 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.43629 * 302.54383 * 9 7 6 11 11 C 1.54895 * 110.48758 * 65.23049 * 9 7 6 12 12 C 1.54887 * 102.75097 * 156.61995 * 11 9 7 13 13 C 1.54267 * 104.19584 * 322.05695 * 12 11 9 14 14 F 1.39900 * 110.03152 * 264.32662 * 13 12 11 15 15 F 1.39896 * 110.07383 * 142.91893 * 13 12 11 16 16 C 1.53878 * 106.59875 * 23.61077 * 13 12 11 17 17 C 1.46893 * 110.99979 * 123.95933 * 2 1 3 18 18 C 1.50707 * 109.47092 * 66.04759 * 17 2 1 19 19 O 1.21294 * 119.99998 * 359.97438 * 18 17 2 20 20 N 1.34774 * 119.99959 * 180.02562 * 18 17 2 21 21 C 1.37094 * 120.00205 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99874 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00081 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99716 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47220 * 90.00280 * 25 23 21 27 27 H 1.48501 * 109.46695 * 210.00017 * 25 23 21 28 28 H 1.48495 * 109.47178 * 329.99771 * 25 23 21 29 29 H 1.09007 * 109.47285 * 59.99255 * 1 2 3 30 30 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46896 * 299.99735 * 1 2 3 32 32 H 1.09002 * 109.46980 * 173.95497 * 3 2 1 33 33 H 1.09001 * 109.46628 * 53.95919 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99734 * 4 3 2 35 35 H 1.08998 * 109.46862 * 300.00546 * 4 3 2 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 38 38 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 39 39 H 1.09004 * 110.75336 * 274.93777 * 11 9 7 40 40 H 1.09002 * 110.75373 * 38.29894 * 11 9 7 41 41 H 1.08994 * 110.48551 * 203.38034 * 12 11 9 42 42 H 1.09000 * 110.59806 * 80.78941 * 12 11 9 43 43 H 1.08999 * 110.03163 * 240.71870 * 16 13 12 44 44 H 1.08995 * 110.07524 * 119.30758 * 16 13 12 45 45 H 1.09000 * 109.47081 * 186.04503 * 17 2 1 46 46 H 1.08993 * 109.47389 * 306.04375 * 17 2 1 47 47 H 0.97006 * 120.00093 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0576 -1.3181 5 6 2.1792 3.4862 -1.3177 6 7 1.8311 4.1430 -2.5802 7 6 2.2119 5.4162 -2.8047 8 8 2.8430 6.0180 -1.9619 9 6 1.8544 6.0916 -4.1036 10 1 2.2448 5.5236 -4.9480 11 6 0.3191 6.2593 -4.2228 12 6 0.1803 7.4386 -5.2172 13 6 1.3312 8.3925 -4.8359 14 9 0.8628 9.3868 -3.9705 15 9 1.8728 8.9754 -5.9866 16 6 2.3956 7.5360 -4.1279 17 6 1.9954 -0.7661 1.1375 18 6 1.6369 -2.2205 0.9726 19 8 1.0046 -2.5832 0.0031 20 7 2.0180 -3.1182 1.9029 21 6 1.6924 -4.4414 1.7526 22 1 1.1301 -4.7644 0.8890 23 6 2.0857 -5.3669 2.7115 24 7 1.7731 -6.6352 2.5677 25 14 3.0588 -4.8083 4.2049 26 1 2.1222 -4.4450 5.2985 27 1 3.9456 -5.9098 4.6582 28 1 3.8823 -3.6261 3.8452 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8310 34 1 0.5472 2.0847 -1.4263 35 1 2.0657 1.5017 -2.1490 36 1 3.2635 3.4596 -1.2093 37 1 1.7445 4.0417 -0.4868 38 1 1.3261 3.6617 -3.2541 39 1 -0.1377 5.3564 -4.6280 40 1 -0.1177 6.5145 -3.2573 41 1 -0.7828 7.9331 -5.0904 42 1 0.2973 7.0907 -6.2435 43 1 2.5472 7.8951 -3.1100 44 1 3.3344 7.5737 -4.6805 45 1 3.0797 -0.6612 1.1755 46 1 1.5612 -0.3874 2.0627 47 1 2.5234 -2.8281 2.6784 48 1 2.0480 -7.2813 3.2369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712950784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:56 Heat of formation + Delta-G solvation = -175.721643 kcal Electronic energy + Delta-G solvation = -29556.600293 eV Core-core repulsion = 24895.904121 eV Total energy + Delta-G solvation = -4660.696172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.36770 -47.43680 -40.50532 -38.88373 -37.46576 -36.91782 -35.39738 -33.93842 -31.92362 -31.66364 -29.98683 -28.82486 -28.01551 -26.45939 -24.75784 -23.25895 -22.35874 -21.61348 -21.15905 -20.18117 -19.36658 -18.41006 -18.24222 -17.71853 -17.06407 -16.65386 -16.23397 -16.18859 -15.85999 -15.45628 -15.05989 -14.97885 -14.79661 -14.73211 -14.40497 -14.24668 -13.85273 -13.76642 -13.65688 -13.48634 -13.12078 -12.71249 -12.61184 -12.45834 -12.40009 -12.38578 -12.21605 -12.01864 -11.84066 -11.78864 -11.55740 -11.41883 -11.37140 -11.24070 -11.04867 -10.84179 -10.61042 -10.24979 -9.99305 -9.55671 -9.48339 -8.60863 -8.20172 -8.00226 -6.32896 -3.84331 2.15747 2.61266 3.01322 3.05271 3.13858 3.22439 3.38958 3.50031 3.71783 3.81894 3.89205 4.08731 4.21882 4.35568 4.48314 4.56156 4.61191 4.68793 4.70382 4.77733 4.86876 4.94569 5.05650 5.10423 5.19403 5.27903 5.33018 5.38672 5.39908 5.45670 5.48548 5.53489 5.60923 5.78727 5.82233 5.88020 5.91558 5.97040 6.05464 6.45906 7.03611 7.11156 7.25986 7.56776 7.76214 8.12735 8.58487 8.93483 9.40739 9.81637 10.80195 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.037313 B = 0.001370 C = 0.001346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.218757 B =20428.648289 C =20796.032361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.725 5.725 7 C 0.520 3.480 8 O -0.536 6.536 9 C -0.113 4.113 10 H 0.114 0.886 11 C -0.113 4.113 12 C -0.160 4.160 13 C 0.281 3.719 14 F -0.196 7.196 15 F -0.199 7.199 16 C -0.153 4.153 17 C 0.043 3.957 18 C 0.453 3.547 19 O -0.560 6.560 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.403 0.597 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 28.953 -12.727 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.376 5.376 7 C 0.306 3.694 8 O -0.413 6.413 9 C -0.134 4.134 10 H 0.132 0.868 11 C -0.151 4.151 12 C -0.198 4.198 13 C 0.245 3.755 14 F -0.177 7.177 15 F -0.180 7.180 16 C -0.191 4.191 17 C -0.089 4.089 18 C 0.238 3.762 19 O -0.442 6.442 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.033 0.967 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.237 0.763 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.874 28.709 -13.111 31.573 hybrid contribution 0.386 0.570 1.676 1.812 sum -0.488 29.278 -11.434 31.436 Atomic orbital electron populations 1.22596 0.86675 1.04572 0.99032 1.61535 1.08814 1.11327 1.42596 1.22004 1.00459 0.88853 0.95789 1.21776 1.01837 0.93404 0.99569 1.21374 1.00801 0.92749 0.85559 1.45967 1.57690 1.13597 1.20353 1.20269 0.79082 0.81651 0.88412 1.90727 1.39627 1.64270 1.46635 1.22097 0.97702 0.96403 0.97224 0.86821 1.22505 0.93386 0.98845 1.00332 1.23372 0.98293 0.96086 1.02073 1.21782 0.93308 0.83423 0.76992 1.93037 1.89591 1.64846 1.70219 1.93024 1.87255 1.86554 1.51135 1.23092 0.98049 0.93184 1.04823 1.21898 1.00819 0.93999 0.92143 1.19637 0.85141 0.86460 0.84933 1.90521 1.42696 1.79979 1.30973 1.42218 1.50906 1.08395 1.21535 1.19424 1.33753 0.80410 1.09778 0.86273 1.25034 0.97853 0.95122 0.98109 1.69622 1.45754 1.01144 1.35611 0.86677 0.80498 0.78876 0.83373 1.19675 1.20162 1.19475 0.91955 0.88548 0.96693 0.90570 0.94830 0.91004 0.90056 0.91150 0.91401 0.76264 0.88866 0.89734 0.88385 0.87865 0.86696 0.88154 0.89242 0.93322 0.79720 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.07 0.54 0.81 16 2 N -0.52 -7.71 4.50 -244.37 -1.10 -8.81 16 3 C 0.06 0.62 4.96 -3.83 -0.02 0.60 16 4 C -0.13 -1.06 5.25 -26.74 -0.14 -1.20 16 5 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 6 N -0.72 -4.63 5.54 -60.29 -0.33 -4.96 16 7 C 0.52 4.14 7.13 -10.99 -0.08 4.07 16 8 O -0.54 -6.55 15.42 5.56 0.09 -6.46 16 9 C -0.11 -0.55 3.25 -90.11 -0.29 -0.84 16 10 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 11 C -0.11 -0.38 6.31 -24.74 -0.16 -0.54 16 12 C -0.16 -0.63 6.40 -25.07 -0.16 -0.79 16 13 C 0.28 1.91 2.57 -25.61 -0.07 1.84 16 14 F -0.20 -1.77 17.04 2.25 0.04 -1.73 16 15 F -0.20 -1.62 17.04 2.25 0.04 -1.58 16 16 C -0.15 -1.00 5.88 -25.61 -0.15 -1.15 16 17 C 0.04 0.69 5.45 -4.98 -0.03 0.67 16 18 C 0.45 10.01 7.48 -10.98 -0.08 9.93 16 19 O -0.56 -14.51 13.91 5.55 0.08 -14.43 16 20 N -0.59 -13.82 5.09 -10.96 -0.06 -13.88 16 21 C -0.30 -8.50 10.16 -14.94 -0.15 -8.65 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.49 13.96 55.50 0.77 -24.71 16 25 Si 0.88 19.13 27.74 -169.99 -4.71 14.42 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 28 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 29 H 0.06 0.76 6.47 -51.93 -0.34 0.42 16 30 H 0.10 1.77 5.82 -51.93 -0.30 1.47 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 33 H 0.03 0.34 8.12 -51.93 -0.42 -0.09 16 34 H 0.07 0.57 6.55 -51.93 -0.34 0.23 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 1.54 8.47 -40.82 -0.35 1.19 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.37 8.05 -51.93 -0.42 -0.05 16 41 H 0.10 0.34 8.11 -51.93 -0.42 -0.08 16 42 H 0.10 0.26 8.12 -51.93 -0.42 -0.16 16 43 H 0.11 0.99 6.72 -51.93 -0.35 0.64 16 44 H 0.10 0.58 8.02 -51.93 -0.42 0.16 16 45 H 0.09 1.27 7.93 -51.93 -0.41 0.85 16 46 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 47 H 0.37 7.60 5.76 -40.82 -0.24 7.36 16 48 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 394.71 15.07 5.95 5.95 Total: -1.00 -35.04 394.71 -7.49 -42.54 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.35 Total: 6.99 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -0.91 Total: 6.68 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.72 Total: -52.37 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: 0.16 Total: -20.90 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.08 Total: -3.32 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.04 -7.49 -42.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712950784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.184 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds