Wall clock time and date at job start Wed Apr 1 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99865 * 2 1 4 4 C 1.52992 * 109.47859 * 293.95839 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.43629 * 302.54383 * 9 7 6 11 11 C 1.54895 * 110.48758 * 65.23049 * 9 7 6 12 12 C 1.54887 * 102.75097 * 156.61995 * 11 9 7 13 13 C 1.54267 * 104.19584 * 322.05695 * 12 11 9 14 14 F 1.39900 * 110.03152 * 264.32662 * 13 12 11 15 15 F 1.39896 * 110.07383 * 142.91893 * 13 12 11 16 16 C 1.53878 * 106.59875 * 23.61077 * 13 12 11 17 17 C 1.46893 * 110.99979 * 123.95933 * 2 1 3 18 18 C 1.50707 * 109.47092 * 66.04759 * 17 2 1 19 19 O 1.21294 * 119.99998 * 359.97438 * 18 17 2 20 20 N 1.34774 * 119.99959 * 180.02562 * 18 17 2 21 21 C 1.37094 * 120.00205 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99874 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00081 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99716 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47220 * 90.00280 * 25 23 21 27 27 H 1.48501 * 109.46695 * 210.00017 * 25 23 21 28 28 H 1.48495 * 109.47178 * 329.99771 * 25 23 21 29 29 H 1.09007 * 109.47285 * 59.99255 * 1 2 3 30 30 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46896 * 299.99735 * 1 2 3 32 32 H 1.09002 * 109.46980 * 173.95497 * 3 2 1 33 33 H 1.09001 * 109.46628 * 53.95919 * 3 2 1 34 34 H 1.09002 * 109.47103 * 59.99734 * 4 3 2 35 35 H 1.08998 * 109.46862 * 300.00546 * 4 3 2 36 36 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 37 37 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 38 38 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 39 39 H 1.09004 * 110.75336 * 274.93777 * 11 9 7 40 40 H 1.09002 * 110.75373 * 38.29894 * 11 9 7 41 41 H 1.08994 * 110.48551 * 203.38034 * 12 11 9 42 42 H 1.09000 * 110.59806 * 80.78941 * 12 11 9 43 43 H 1.08999 * 110.03163 * 240.71870 * 16 13 12 44 44 H 1.08995 * 110.07524 * 119.30758 * 16 13 12 45 45 H 1.09000 * 109.47081 * 186.04503 * 17 2 1 46 46 H 1.08993 * 109.47389 * 306.04375 * 17 2 1 47 47 H 0.97006 * 120.00093 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0576 -1.3181 5 6 2.1792 3.4862 -1.3177 6 7 1.8311 4.1430 -2.5802 7 6 2.2119 5.4162 -2.8047 8 8 2.8430 6.0180 -1.9619 9 6 1.8544 6.0916 -4.1036 10 1 2.2448 5.5236 -4.9480 11 6 0.3191 6.2593 -4.2228 12 6 0.1803 7.4386 -5.2172 13 6 1.3312 8.3925 -4.8359 14 9 0.8628 9.3868 -3.9705 15 9 1.8728 8.9754 -5.9866 16 6 2.3956 7.5360 -4.1279 17 6 1.9954 -0.7661 1.1375 18 6 1.6369 -2.2205 0.9726 19 8 1.0046 -2.5832 0.0031 20 7 2.0180 -3.1182 1.9029 21 6 1.6924 -4.4414 1.7526 22 1 1.1301 -4.7644 0.8890 23 6 2.0857 -5.3669 2.7115 24 7 1.7731 -6.6352 2.5677 25 14 3.0588 -4.8083 4.2049 26 1 2.1222 -4.4450 5.2985 27 1 3.9456 -5.9098 4.6582 28 1 3.8823 -3.6261 3.8452 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8310 34 1 0.5472 2.0847 -1.4263 35 1 2.0657 1.5017 -2.1490 36 1 3.2635 3.4596 -1.2093 37 1 1.7445 4.0417 -0.4868 38 1 1.3261 3.6617 -3.2541 39 1 -0.1377 5.3564 -4.6280 40 1 -0.1177 6.5145 -3.2573 41 1 -0.7828 7.9331 -5.0904 42 1 0.2973 7.0907 -6.2435 43 1 2.5472 7.8951 -3.1100 44 1 3.3344 7.5737 -4.6805 45 1 3.0797 -0.6612 1.1755 46 1 1.5612 -0.3874 2.0627 47 1 2.5234 -2.8281 2.6784 48 1 2.0480 -7.2813 3.2369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712950784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:54 Heat of formation + Delta-G solvation = -202.956286 kcal Electronic energy + Delta-G solvation = -29557.781276 eV Core-core repulsion = 24895.904121 eV Total energy + Delta-G solvation = -4661.877155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.95046 -48.04077 -41.10310 -40.48402 -38.39399 -37.64678 -36.27404 -35.80699 -33.73796 -32.69303 -30.40768 -29.62235 -29.08819 -27.43772 -26.35551 -24.19677 -22.99073 -22.08170 -21.98238 -21.22666 -20.78013 -20.14345 -18.92458 -18.23326 -17.84772 -17.57097 -17.13491 -16.92187 -16.80921 -16.67990 -16.44841 -15.99282 -15.72317 -15.44358 -15.23763 -15.14728 -14.91103 -14.78933 -14.67532 -14.38781 -14.27203 -14.18131 -13.69641 -13.38029 -13.25409 -13.07629 -12.92616 -12.79733 -12.75073 -12.69427 -12.51220 -12.38576 -12.37640 -12.28253 -11.97248 -11.92913 -11.66986 -11.60997 -11.44913 -10.90575 -10.34470 -10.21139 -10.09951 -9.17933 -8.39830 -6.00221 1.31291 1.36138 1.45153 1.57404 1.98492 2.05352 2.24005 2.66246 2.80214 2.95693 3.07394 3.16750 3.28778 3.39870 3.82315 3.91736 3.99425 4.04540 4.07976 4.15529 4.20810 4.23541 4.32269 4.39592 4.41921 4.45973 4.55612 4.62916 4.67410 4.73815 4.78105 4.83061 4.87225 4.96901 5.00105 5.11757 5.13299 5.23119 5.32234 5.46250 5.54867 5.92153 6.04005 6.24067 6.53927 6.61943 6.90748 7.22308 7.42397 7.99895 8.77781 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.037313 B = 0.001370 C = 0.001346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.218757 B =20428.648289 C =20796.032361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.057 3.943 4 C -0.115 4.115 5 C 0.126 3.874 6 N -0.713 5.713 7 C 0.518 3.482 8 O -0.585 6.585 9 C -0.104 4.104 10 H 0.144 0.856 11 C -0.107 4.107 12 C -0.152 4.152 13 C 0.270 3.730 14 F -0.214 7.214 15 F -0.208 7.208 16 C -0.155 4.155 17 C 0.053 3.947 18 C 0.451 3.549 19 O -0.604 6.604 20 N -0.594 5.594 21 C -0.326 4.326 22 H 0.056 0.944 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.258 1.258 27 H -0.276 1.276 28 H -0.231 1.231 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 30.989 -12.259 33.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.153 4.153 5 C 0.002 3.998 6 N -0.365 5.365 7 C 0.305 3.695 8 O -0.465 6.465 9 C -0.125 4.125 10 H 0.162 0.838 11 C -0.144 4.144 12 C -0.190 4.190 13 C 0.234 3.766 14 F -0.195 7.195 15 F -0.190 7.190 16 C -0.193 4.193 17 C -0.078 4.078 18 C 0.239 3.761 19 O -0.488 6.488 20 N -0.236 5.236 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.576 5.576 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.154 1.154 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.255 0.745 39 H 0.143 0.857 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.136 0.864 46 H 0.095 0.905 47 H 0.224 0.776 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.115 30.762 -12.675 33.272 hybrid contribution 0.078 -0.045 1.401 1.404 sum -0.037 30.718 -11.274 32.721 Atomic orbital electron populations 1.22471 0.86935 1.02067 1.00962 1.61486 1.08859 1.13782 1.42350 1.22098 1.00959 0.86578 0.97393 1.21631 1.02204 0.93145 0.98317 1.21200 1.00190 0.92393 0.86057 1.45862 1.57163 1.13199 1.20248 1.20782 0.78145 0.81724 0.88852 1.90712 1.41952 1.65426 1.48430 1.22129 0.98888 0.95104 0.96391 0.83816 1.22546 0.92067 0.99936 0.99885 1.23406 0.97066 0.95269 1.03256 1.22220 0.94600 0.83301 0.76496 1.92998 1.89812 1.65797 1.70912 1.93000 1.87579 1.86821 1.51551 1.23058 0.98542 0.94436 1.03286 1.21835 1.02746 0.89289 0.93926 1.20920 0.82899 0.88882 0.83389 1.90511 1.44102 1.81471 1.32752 1.42058 1.51841 1.06825 1.22853 1.19001 1.34675 0.83183 1.08716 0.92588 1.26083 0.98674 0.94658 1.01894 1.69805 1.47372 1.02993 1.37433 0.85386 0.78914 0.79659 0.77709 1.18271 1.20145 1.15434 0.89728 0.93153 0.95096 0.89635 0.93496 0.90284 0.90415 0.92012 0.91996 0.74460 0.85711 0.90924 0.87864 0.85814 0.89315 0.87754 0.86358 0.90547 0.77587 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 8.96 127.69 1.14 1.79 16 2 N -0.54 -14.73 4.50 -927.06 -4.17 -18.90 16 3 C 0.06 1.03 4.96 86.30 0.43 1.45 16 4 C -0.11 -1.57 5.25 30.59 0.16 -1.41 16 5 C 0.13 1.68 5.67 86.38 0.49 2.17 16 6 N -0.71 -7.33 5.54 -463.06 -2.57 -9.90 16 7 C 0.52 7.45 7.13 87.66 0.62 8.08 16 8 O -0.59 -14.21 15.42 -3.03 -0.05 -14.26 16 9 C -0.10 -0.78 3.25 -10.46 -0.03 -0.82 16 10 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 11 C -0.11 -0.42 6.31 31.89 0.20 -0.22 16 12 C -0.15 -0.82 6.40 31.67 0.20 -0.61 16 13 C 0.27 3.45 2.57 31.32 0.08 3.53 16 14 F -0.21 -3.93 17.04 44.97 0.77 -3.16 16 15 F -0.21 -3.25 17.04 44.97 0.77 -2.48 16 16 C -0.15 -1.94 5.88 31.32 0.18 -1.75 16 17 C 0.05 1.56 5.45 85.56 0.47 2.03 16 18 C 0.45 19.87 7.48 87.66 0.66 20.52 16 19 O -0.60 -32.48 13.91 -3.07 -0.04 -32.52 16 20 N -0.59 -27.55 5.09 -306.98 -1.56 -29.11 16 21 C -0.33 -18.92 10.16 84.04 0.85 -18.07 16 22 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 24 N -0.94 -56.05 13.96 21.66 0.30 -55.75 16 25 Si 0.96 38.40 27.74 68.60 1.90 40.30 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 27 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 28 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 29 H 0.08 1.88 6.47 -2.38 -0.02 1.87 16 30 H 0.05 1.87 5.82 -2.39 -0.01 1.86 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.39 7.93 -2.39 -0.02 1.37 16 33 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 34 H 0.08 0.99 6.55 -2.39 -0.02 0.97 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.42 1.75 8.47 -92.71 -0.79 0.97 16 39 H 0.12 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.07 0.50 8.05 -2.39 -0.02 0.48 16 41 H 0.10 0.49 8.11 -2.39 -0.02 0.47 16 42 H 0.12 0.19 8.12 -2.39 -0.02 0.17 16 43 H 0.09 1.61 6.72 -2.39 -0.02 1.60 16 44 H 0.10 1.15 8.02 -2.39 -0.02 1.13 16 45 H 0.12 2.85 7.93 -2.39 -0.02 2.83 16 46 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 47 H 0.39 14.91 5.76 -92.70 -0.53 14.37 16 48 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -84.03 394.71 0.89 -83.14 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.38 Total: 26.28 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 5.92 Total: 16.36 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -8.00 Total: -113.65 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.09 Total: -46.78 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 1.53 Total: -5.64 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.30 kcal Total: -84.03 0.89 -83.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712950784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.818 kcal (2) G-P(sol) polarization free energy of solvation -84.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds