Wall clock time and date at job start Wed Apr 1 2020 04:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.47033 * 2 1 4 4 C 1.46904 * 110.99465 * 59.18584 * 3 2 1 5 5 C 1.53001 * 109.47308 * 66.04763 * 4 3 2 6 6 N 1.46500 * 109.46972 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99905 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.50690 * 119.99996 * 179.72417 * 7 6 5 10 10 C 1.52999 * 112.85077 * 48.80296 * 9 7 6 11 11 F 1.39906 * 109.47096 * 69.66928 * 10 9 7 12 12 F 1.39905 * 109.47286 * 189.66373 * 10 9 7 13 13 C 1.53778 * 113.61771 * 277.49643 * 9 7 6 14 14 C 1.53776 * 87.08327 * 220.01994 * 13 9 7 15 15 C 1.53781 * 87.08433 * 25.43266 * 14 13 9 16 16 C 1.46896 * 110.99931 * 295.23587 * 3 2 1 17 17 C 1.50708 * 109.46912 * 288.23274 * 16 3 2 18 18 O 1.21297 * 119.99713 * 354.30283 * 17 16 3 19 19 N 1.34775 * 119.99775 * 174.30355 * 17 16 3 20 20 C 1.37104 * 119.99693 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99696 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99696 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00173 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99742 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47107 * 89.99538 * 24 22 20 26 26 H 1.48496 * 109.47219 * 209.99880 * 24 22 20 27 27 H 1.48507 * 109.47022 * 329.99746 * 24 22 20 28 28 H 1.08998 * 109.47360 * 299.98220 * 1 2 3 29 29 H 1.08999 * 109.47190 * 59.98534 * 1 2 3 30 30 H 1.09004 * 109.46581 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47366 * 240.00861 * 2 1 3 32 32 H 1.08997 * 109.47589 * 120.00298 * 2 1 3 33 33 H 1.09004 * 109.46922 * 306.04268 * 4 3 2 34 34 H 1.09003 * 109.46806 * 186.04938 * 4 3 2 35 35 H 1.08996 * 109.47075 * 59.99458 * 5 4 3 36 36 H 1.08999 * 109.46860 * 299.99993 * 5 4 3 37 37 H 0.96999 * 120.00120 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.47275 * 309.66544 * 10 9 7 39 39 H 1.09003 * 113.61211 * 334.56711 * 13 9 7 40 40 H 1.08999 * 113.61542 * 105.46769 * 13 9 7 41 41 H 1.08998 * 113.61568 * 270.87753 * 14 13 9 42 42 H 1.09007 * 113.61202 * 139.98093 * 14 13 9 43 43 H 1.08999 * 113.61181 * 220.02345 * 15 14 13 44 44 H 1.08995 * 113.61354 * 89.11310 * 15 14 13 45 45 H 1.08996 * 109.47705 * 48.23231 * 16 3 2 46 46 H 1.09000 * 109.46792 * 168.24057 * 16 3 2 47 47 H 0.97001 * 120.00413 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99716 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5327 2.1155 1.1779 5 6 2.1475 1.5120 2.4424 6 7 1.6623 2.2409 3.6169 7 6 2.0728 1.8823 4.8495 8 8 2.8436 0.9559 4.9863 9 6 1.5786 2.6359 6.0572 10 6 0.0598 2.8200 6.0622 11 9 -0.5591 1.5842 6.2791 12 9 -0.2992 3.7068 7.0830 13 6 2.3589 3.9312 6.3370 14 6 2.2668 3.5714 7.8292 15 6 2.1390 2.1041 7.3870 16 6 1.6438 2.0763 -1.2405 17 6 2.4639 1.5370 -2.3842 18 8 3.3515 0.7385 -2.1704 19 7 2.2110 1.9422 -3.6445 20 6 2.9567 1.4512 -4.6850 21 1 3.7470 0.7402 -4.4946 22 6 2.6963 1.8693 -5.9842 23 7 1.7351 2.7348 -6.2157 24 14 3.7119 1.1998 -7.4020 25 1 3.0701 -0.0294 -7.9334 26 1 3.7935 2.2204 -8.4776 27 1 5.0794 0.8763 -6.9218 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.4466 2.0387 1.2296 34 1 1.8194 3.1642 1.0992 35 1 3.2335 1.5888 2.3906 36 1 1.8607 0.4634 2.5209 37 1 1.0456 2.9816 3.5075 38 1 -0.2605 3.2231 5.1014 39 1 3.3768 3.9205 5.9473 40 1 1.8124 4.8361 6.0714 41 1 1.3732 3.9598 8.3177 42 1 3.1800 3.7816 8.3862 43 1 1.4149 1.5342 7.9692 44 1 3.0967 1.5940 7.2844 45 1 0.5856 1.9107 -1.4425 46 1 1.8303 3.1447 -1.1319 47 1 1.5014 2.5811 -3.8154 48 1 1.5531 3.0264 -7.1228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713490842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:57 Heat of formation + Delta-G solvation = -142.533645 kcal Electronic energy + Delta-G solvation = -30971.418477 eV Core-core repulsion = 26312.161444 eV Total energy + Delta-G solvation = -4659.257032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.57088 -47.51551 -40.81328 -39.04267 -38.05751 -37.07081 -34.99729 -33.84754 -31.26196 -30.75945 -30.03022 -28.72326 -26.35786 -26.17518 -24.82524 -24.31695 -23.52386 -21.41505 -20.57536 -19.77387 -18.98959 -18.55991 -17.84107 -17.77972 -17.46925 -16.47527 -16.38468 -16.22385 -15.83121 -15.48601 -15.22716 -14.83127 -14.59219 -14.45190 -14.24338 -13.99902 -13.82527 -13.47013 -13.40306 -13.35071 -13.10746 -13.01307 -12.94811 -12.49274 -12.33934 -12.17893 -11.95039 -11.72320 -11.66882 -11.52588 -11.44236 -11.15610 -11.00137 -10.97125 -10.78592 -10.50610 -10.39634 -10.22389 -10.13621 -9.48729 -9.37070 -8.49908 -7.97577 -7.90272 -6.42171 -3.82781 2.11508 2.62340 3.06120 3.17399 3.26122 3.32178 3.48671 3.66016 3.72805 3.90890 3.97455 4.19812 4.23232 4.29180 4.38366 4.56922 4.71837 4.85224 4.94207 5.05621 5.14569 5.20632 5.24425 5.27728 5.34061 5.37857 5.38734 5.48342 5.52521 5.56853 5.62476 5.75498 5.80311 5.86056 5.86673 5.98192 6.11178 6.21905 6.29105 6.48335 7.04006 7.18388 7.27435 7.54966 7.79557 8.06257 8.61882 9.18363 9.54481 10.06689 10.75652 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025362 B = 0.001802 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.740214 B =15538.311101 C =15637.109084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.039 3.961 5 C 0.121 3.879 6 N -0.726 5.726 7 C 0.535 3.465 8 O -0.519 6.519 9 C -0.175 4.175 10 C 0.293 3.707 11 F -0.194 7.194 12 F -0.193 7.193 13 C -0.108 4.108 14 C -0.147 4.147 15 C -0.106 4.106 16 C 0.043 3.957 17 C 0.444 3.556 18 O -0.574 6.574 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.396 0.604 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 5.455 25.356 26.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.230 5.230 4 C -0.090 4.090 5 C -0.002 4.002 6 N -0.378 5.378 7 C 0.319 3.681 8 O -0.393 6.393 9 C -0.179 4.179 10 C 0.239 3.761 11 F -0.175 7.175 12 F -0.174 7.174 13 C -0.146 4.146 14 C -0.185 4.185 15 C -0.144 4.144 16 C -0.089 4.089 17 C 0.230 3.770 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.230 0.770 38 H 0.131 0.869 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.115 0.885 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.205 4.278 25.436 26.313 hybrid contribution -1.407 0.518 -1.081 1.848 sum -6.612 4.795 24.355 25.688 Atomic orbital electron populations 1.22459 0.98906 1.02386 1.01540 1.22278 0.91908 0.89822 1.04108 1.61673 1.59125 1.02067 1.00114 1.22291 0.97658 0.98648 0.90373 1.21401 1.00402 0.96046 0.82394 1.45983 1.49117 1.36420 1.06317 1.19687 0.81478 0.83623 0.83278 1.90748 1.34529 1.28356 1.85695 1.23367 0.94629 1.02154 0.97745 1.21295 0.89539 0.75188 0.90125 1.93036 1.84104 1.44394 1.95959 1.92972 1.92691 1.68457 1.63254 1.22836 1.00633 0.93729 0.97406 1.23082 1.03673 0.95856 0.95857 1.22827 1.02878 0.97326 0.91358 1.21925 0.98060 0.98797 0.90070 1.19723 0.87464 0.86361 0.83498 1.90527 1.34268 1.37063 1.83917 1.41869 1.32945 1.40664 1.04881 1.19690 1.14453 1.23668 0.84857 0.87935 1.25249 0.97263 0.96730 0.98769 1.69608 1.30717 1.32013 1.22127 0.85867 0.80052 0.78276 0.80158 1.20457 1.20961 1.19409 0.92919 0.92235 0.92054 0.88737 0.90896 0.93902 0.90293 0.89970 0.90888 0.76978 0.86923 0.88301 0.89789 0.88532 0.90374 0.90318 0.87604 0.92811 0.89467 0.77584 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.40 9.26 37.16 0.34 -2.06 16 2 C 0.05 0.70 5.52 -3.82 -0.02 0.68 16 3 N -0.51 -7.75 4.31 -236.06 -1.02 -8.76 16 4 C 0.04 0.42 4.81 -3.82 -0.02 0.40 16 5 C 0.12 1.33 5.60 -4.04 -0.02 1.30 16 6 N -0.73 -6.11 5.44 -60.30 -0.33 -6.44 16 7 C 0.54 5.48 6.91 -10.99 -0.08 5.40 16 8 O -0.52 -7.53 15.90 5.55 0.09 -7.44 16 9 C -0.17 -1.30 1.03 -154.85 -0.16 -1.46 16 10 C 0.29 1.92 4.68 37.16 0.17 2.10 16 11 F -0.19 -1.80 17.06 2.25 0.04 -1.76 16 12 F -0.19 -1.35 14.55 2.25 0.03 -1.32 16 13 C -0.11 -0.61 6.96 -25.92 -0.18 -0.79 16 14 C -0.15 -0.86 7.56 -25.92 -0.20 -1.05 16 15 C -0.11 -0.83 6.90 -25.91 -0.18 -1.01 16 16 C 0.04 0.71 5.34 -4.97 -0.03 0.69 16 17 C 0.44 10.19 7.36 -10.98 -0.08 10.11 16 18 O -0.57 -15.29 14.70 5.54 0.08 -15.21 16 19 N -0.57 -14.04 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.05 0.56 6.26 -51.93 -0.33 0.24 16 29 H 0.06 0.79 6.29 -51.93 -0.33 0.46 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.76 6.54 -51.93 -0.34 1.42 16 32 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 33 H 0.04 0.40 5.98 -51.93 -0.31 0.09 16 34 H 0.08 0.76 7.86 -51.93 -0.41 0.36 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.89 6.57 -51.93 -0.34 0.55 16 37 H 0.40 2.04 7.37 -40.82 -0.30 1.74 16 38 H 0.11 0.39 7.04 -51.93 -0.37 0.03 16 39 H 0.10 0.60 8.09 -51.93 -0.42 0.18 16 40 H 0.08 0.35 8.06 -51.93 -0.42 -0.07 16 41 H 0.10 0.55 6.44 -51.93 -0.33 0.22 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 44 H 0.11 0.95 7.43 -51.93 -0.39 0.57 16 45 H 0.05 0.82 5.97 -51.93 -0.31 0.51 16 46 H 0.09 1.30 7.81 -51.93 -0.41 0.89 16 47 H 0.39 9.25 7.90 -40.82 -0.32 8.92 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -33.53 388.23 -7.14 -40.67 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.84 Total: 9.70 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.68 Total: 6.45 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.68 Total: -52.86 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.53 -7.14 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713490842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.863 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds