Wall clock time and date at job start Wed Apr 1 2020 04:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46908 * 109.47033 * 2 1 4 4 C 1.46904 * 110.99465 * 59.18584 * 3 2 1 5 5 C 1.53001 * 109.47308 * 66.04763 * 4 3 2 6 6 N 1.46500 * 109.46972 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99905 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.50690 * 119.99996 * 179.72417 * 7 6 5 10 10 C 1.52999 * 112.85077 * 48.80296 * 9 7 6 11 11 F 1.39906 * 109.47096 * 69.66928 * 10 9 7 12 12 F 1.39905 * 109.47286 * 189.66373 * 10 9 7 13 13 C 1.53778 * 113.61771 * 277.49643 * 9 7 6 14 14 C 1.53776 * 87.08327 * 220.01994 * 13 9 7 15 15 C 1.53781 * 87.08433 * 25.43266 * 14 13 9 16 16 C 1.46896 * 110.99931 * 295.23587 * 3 2 1 17 17 C 1.50708 * 109.46912 * 288.23274 * 16 3 2 18 18 O 1.21297 * 119.99713 * 354.30283 * 17 16 3 19 19 N 1.34775 * 119.99775 * 174.30355 * 17 16 3 20 20 C 1.37104 * 119.99693 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99696 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99696 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00173 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99742 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47107 * 89.99538 * 24 22 20 26 26 H 1.48496 * 109.47219 * 209.99880 * 24 22 20 27 27 H 1.48507 * 109.47022 * 329.99746 * 24 22 20 28 28 H 1.08998 * 109.47360 * 299.98220 * 1 2 3 29 29 H 1.08999 * 109.47190 * 59.98534 * 1 2 3 30 30 H 1.09004 * 109.46581 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47366 * 240.00861 * 2 1 3 32 32 H 1.08997 * 109.47589 * 120.00298 * 2 1 3 33 33 H 1.09004 * 109.46922 * 306.04268 * 4 3 2 34 34 H 1.09003 * 109.46806 * 186.04938 * 4 3 2 35 35 H 1.08996 * 109.47075 * 59.99458 * 5 4 3 36 36 H 1.08999 * 109.46860 * 299.99993 * 5 4 3 37 37 H 0.96999 * 120.00120 * 359.97438 * 6 5 4 38 38 H 1.09002 * 109.47275 * 309.66544 * 10 9 7 39 39 H 1.09003 * 113.61211 * 334.56711 * 13 9 7 40 40 H 1.08999 * 113.61542 * 105.46769 * 13 9 7 41 41 H 1.08998 * 113.61568 * 270.87753 * 14 13 9 42 42 H 1.09007 * 113.61202 * 139.98093 * 14 13 9 43 43 H 1.08999 * 113.61181 * 220.02345 * 15 14 13 44 44 H 1.08995 * 113.61354 * 89.11310 * 15 14 13 45 45 H 1.08996 * 109.47705 * 48.23231 * 16 3 2 46 46 H 1.09000 * 109.46792 * 168.24057 * 16 3 2 47 47 H 0.97001 * 120.00413 * 0.02562 * 19 17 16 48 48 H 0.96999 * 119.99716 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5327 2.1155 1.1779 5 6 2.1475 1.5120 2.4424 6 7 1.6623 2.2409 3.6169 7 6 2.0728 1.8823 4.8495 8 8 2.8436 0.9559 4.9863 9 6 1.5786 2.6359 6.0572 10 6 0.0598 2.8200 6.0622 11 9 -0.5591 1.5842 6.2791 12 9 -0.2992 3.7068 7.0830 13 6 2.3589 3.9312 6.3370 14 6 2.2668 3.5714 7.8292 15 6 2.1390 2.1041 7.3870 16 6 1.6438 2.0763 -1.2405 17 6 2.4639 1.5370 -2.3842 18 8 3.3515 0.7385 -2.1704 19 7 2.2110 1.9422 -3.6445 20 6 2.9567 1.4512 -4.6850 21 1 3.7470 0.7402 -4.4946 22 6 2.6963 1.8693 -5.9842 23 7 1.7351 2.7348 -6.2157 24 14 3.7119 1.1998 -7.4020 25 1 3.0701 -0.0294 -7.9334 26 1 3.7935 2.2204 -8.4776 27 1 5.0794 0.8763 -6.9218 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 0.5141 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 0.4466 2.0387 1.2296 34 1 1.8194 3.1642 1.0992 35 1 3.2335 1.5888 2.3906 36 1 1.8607 0.4634 2.5209 37 1 1.0456 2.9816 3.5075 38 1 -0.2605 3.2231 5.1014 39 1 3.3768 3.9205 5.9473 40 1 1.8124 4.8361 6.0714 41 1 1.3732 3.9598 8.3177 42 1 3.1800 3.7816 8.3862 43 1 1.4149 1.5342 7.9692 44 1 3.0967 1.5940 7.2844 45 1 0.5856 1.9107 -1.4425 46 1 1.8303 3.1447 -1.1319 47 1 1.5014 2.5811 -3.8154 48 1 1.5531 3.0264 -7.1228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713490842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:56 Heat of formation + Delta-G solvation = -167.593935 kcal Electronic energy + Delta-G solvation = -30972.505172 eV Core-core repulsion = 26312.161444 eV Total energy + Delta-G solvation = -4660.343728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.11796 -48.08108 -41.55487 -40.50204 -38.99160 -38.34467 -36.05892 -35.72413 -33.25065 -31.67340 -31.16256 -29.53946 -27.67353 -26.80277 -26.00594 -25.46694 -24.49150 -22.15544 -21.77834 -20.70068 -20.34372 -19.76773 -19.23058 -18.36050 -18.07703 -17.67676 -17.41478 -17.19947 -16.89403 -16.58037 -16.47724 -16.07582 -15.68675 -15.61512 -15.32036 -14.95164 -14.79867 -14.60890 -14.56070 -14.38238 -14.03148 -13.96207 -13.65903 -13.49653 -13.43018 -13.13089 -13.05490 -12.98087 -12.85751 -12.75286 -12.51069 -12.40013 -12.28062 -12.15794 -12.09214 -11.67555 -11.53259 -11.41057 -11.27742 -10.96149 -10.29397 -10.22828 -9.97252 -9.14378 -8.44691 -5.92533 1.34391 1.38191 1.41912 1.54163 1.82929 2.10621 2.30518 2.51913 2.84865 3.04277 3.11207 3.19579 3.22539 3.45631 3.66506 3.72817 3.82328 3.90907 4.01926 4.05578 4.15165 4.28925 4.32341 4.35147 4.40749 4.50386 4.58925 4.61457 4.66461 4.72514 4.85064 4.87621 4.88869 4.96300 5.01627 5.04034 5.12561 5.25356 5.34151 5.36615 5.43075 5.89115 6.09154 6.19816 6.37506 6.64396 7.06254 7.16595 7.61041 8.17986 8.72629 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025362 B = 0.001802 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.740214 B =15538.311101 C =15637.109084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 N -0.532 5.532 4 C 0.046 3.954 5 C 0.129 3.871 6 N -0.708 5.708 7 C 0.534 3.466 8 O -0.569 6.569 9 C -0.172 4.172 10 C 0.290 3.710 11 F -0.212 7.212 12 F -0.193 7.193 13 C -0.100 4.100 14 C -0.139 4.139 15 C -0.118 4.118 16 C 0.057 3.943 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.989 3.011 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.275 1.275 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.417 0.583 38 H 0.153 0.847 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.396 0.604 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 7.622 25.940 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.079 4.079 3 N -0.256 5.256 4 C -0.081 4.081 5 C 0.005 3.995 6 N -0.361 5.361 7 C 0.320 3.680 8 O -0.448 6.448 9 C -0.176 4.176 10 C 0.237 3.763 11 F -0.193 7.193 12 F -0.174 7.174 13 C -0.137 4.137 14 C -0.176 4.176 15 C -0.156 4.156 16 C -0.074 4.074 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.459 4.459 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.200 1.200 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.254 0.746 38 H 0.170 0.830 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.230 0.770 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.042 6.497 26.029 27.736 hybrid contribution -0.813 -0.196 -1.172 1.440 sum -7.855 6.301 24.857 26.819 Atomic orbital electron populations 1.22361 0.96425 1.03153 1.02341 1.22125 0.93894 0.89737 1.02095 1.61527 1.60648 1.02401 1.00989 1.22314 0.99025 0.98890 0.87892 1.21130 0.99025 0.95786 0.83542 1.45763 1.48832 1.36483 1.05067 1.20174 0.80617 0.82979 0.84268 1.90732 1.36887 1.30698 1.86458 1.23390 0.95808 1.02661 0.95733 1.21639 0.88472 0.74608 0.91628 1.93005 1.84333 1.45809 1.96153 1.92971 1.92558 1.68262 1.63616 1.22855 1.00408 0.93599 0.96872 1.23051 1.04329 0.93894 0.96298 1.22840 1.01894 0.98637 0.92231 1.21771 0.97702 0.99741 0.88152 1.20899 0.86991 0.84926 0.84330 1.90501 1.36314 1.38769 1.84721 1.41930 1.33103 1.41149 1.05253 1.19607 1.15169 1.24611 0.86541 0.90618 1.25973 0.98149 0.96731 1.00437 1.69660 1.31248 1.32254 1.22958 0.84978 0.78218 0.78096 0.77356 1.19774 1.19522 1.19998 0.90341 0.92898 0.91494 0.93299 0.90426 0.91186 0.88242 0.92526 0.92299 0.74557 0.82978 0.88799 0.87246 0.87946 0.89609 0.91004 0.89482 0.90567 0.86747 0.77004 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.18 9.26 71.98 0.67 -3.51 16 2 C 0.05 1.47 5.52 86.30 0.48 1.95 16 3 N -0.53 -15.56 4.31 -900.76 -3.88 -19.44 16 4 C 0.05 0.86 4.81 86.30 0.41 1.27 16 5 C 0.13 2.66 5.60 86.38 0.48 3.14 16 6 N -0.71 -10.22 5.44 -463.07 -2.52 -12.74 16 7 C 0.53 10.38 6.91 87.65 0.61 10.98 16 8 O -0.57 -16.93 15.90 -3.04 -0.05 -16.98 16 9 C -0.17 -2.26 1.03 -52.40 -0.05 -2.32 16 10 C 0.29 2.99 4.68 71.98 0.34 3.33 16 11 F -0.21 -3.57 17.06 44.97 0.77 -2.80 16 12 F -0.19 -2.14 14.55 44.97 0.65 -1.48 16 13 C -0.10 -0.88 6.96 31.12 0.22 -0.67 16 14 C -0.14 -1.37 7.56 31.12 0.24 -1.14 16 15 C -0.12 -1.82 6.90 31.12 0.21 -1.61 16 16 C 0.06 1.81 5.34 85.56 0.46 2.27 16 17 C 0.44 20.49 7.36 87.66 0.65 21.13 16 18 O -0.62 -34.12 14.70 -3.08 -0.05 -34.16 16 19 N -0.58 -29.00 5.29 -306.97 -1.62 -30.62 16 20 C -0.33 -18.61 9.68 84.04 0.81 -17.80 16 21 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 24 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.08 1.37 6.26 -2.39 -0.01 1.36 16 29 H 0.05 1.27 6.29 -2.39 -0.02 1.26 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.90 6.54 -2.39 -0.02 1.88 16 32 H 0.08 2.19 6.51 -2.39 -0.02 2.18 16 33 H 0.07 0.97 5.98 -2.39 -0.01 0.96 16 34 H 0.10 1.49 7.86 -2.39 -0.02 1.47 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.40 6.57 -2.39 -0.02 1.38 16 37 H 0.42 2.55 7.37 -92.71 -0.68 1.87 16 38 H 0.15 0.36 7.04 -2.39 -0.02 0.35 16 39 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 40 H 0.11 0.45 8.06 -2.39 -0.02 0.43 16 41 H 0.10 0.93 6.44 -2.39 -0.02 0.92 16 42 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.07 1.17 7.93 -2.39 -0.02 1.15 16 44 H 0.09 1.67 7.43 -2.39 -0.02 1.65 16 45 H 0.08 2.11 5.97 -2.39 -0.01 2.09 16 46 H 0.11 3.03 7.81 -2.39 -0.02 3.01 16 47 H 0.40 18.74 7.90 -92.71 -0.73 18.01 16 48 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -76.81 388.23 1.20 -75.61 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.39 Total: 29.59 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: 5.98 Total: 16.80 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -7.74 Total: -111.56 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.15 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 1.42 Total: -4.28 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -76.81 1.20 -75.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713490842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.983 kcal (2) G-P(sol) polarization free energy of solvation -76.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds