Wall clock time and date at job start Wed Apr 1 2020 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46906 * 2 1 4 4 C 1.34772 * 120.00149 * 273.98650 * 3 2 1 5 5 O 1.21521 * 120.00268 * 185.33763 * 4 3 2 6 6 C 1.48152 * 120.00002 * 5.34358 * 4 3 2 7 7 C 1.39440 * 120.09478 * 185.88751 * 6 4 3 8 8 N 1.32080 * 119.87120 * 179.74999 * 7 6 4 9 9 C 1.32143 * 120.07135 * 0.52629 * 8 7 6 10 10 C 1.38732 * 120.19295 * 359.72789 * 9 8 7 11 11 N 1.31798 * 120.12731 * 359.97438 * 10 9 8 12 12 C 1.46504 * 119.99719 * 93.99154 * 3 2 1 13 13 H 1.08997 * 110.64508 * 358.29884 * 12 3 2 14 14 C 1.54589 * 110.72584 * 121.45608 * 12 3 2 15 15 C 1.53987 * 105.14596 * 140.31405 * 14 12 3 16 16 N 1.47901 * 107.05567 * 1.22044 * 15 14 12 17 17 C 1.46900 * 111.00496 * 214.15503 * 16 15 14 18 18 C 1.50700 * 109.47557 * 176.81749 * 17 16 15 19 19 O 1.21299 * 119.99787 * 358.03432 * 18 17 16 20 20 N 1.34777 * 120.00233 * 178.03320 * 18 17 16 21 21 C 1.37096 * 120.00120 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99938 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99929 * 179.72804 * 21 20 18 24 24 N 1.31408 * 119.99868 * 0.26885 * 23 21 20 25 25 Si 1.86795 * 119.99881 * 180.27481 * 23 21 20 26 26 H 1.48501 * 109.47188 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47018 * 119.99778 * 25 23 21 28 28 H 1.48495 * 109.47123 * 239.99473 * 25 23 21 29 29 C 1.48534 * 105.82062 * 334.67237 * 16 15 14 30 30 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47756 * 299.99990 * 1 2 3 32 32 H 1.09004 * 109.47087 * 60.00040 * 1 2 3 33 33 H 1.09001 * 109.47242 * 239.99952 * 2 1 3 34 34 H 1.08995 * 109.47239 * 119.99876 * 2 1 3 35 35 H 1.07998 * 120.06978 * 0.02562 * 7 6 4 36 36 H 1.07996 * 119.90072 * 179.70679 * 9 8 7 37 37 H 1.07993 * 119.93368 * 179.97438 * 10 9 8 38 38 H 1.09007 * 110.31171 * 21.39189 * 14 12 3 39 39 H 1.09006 * 110.39156 * 259.27220 * 14 12 3 40 40 H 1.09003 * 109.91964 * 241.87369 * 15 14 12 41 41 H 1.08996 * 110.08724 * 120.66216 * 15 14 12 42 42 H 1.08999 * 109.46594 * 56.82062 * 17 16 15 43 43 H 1.08996 * 109.47135 * 296.82472 * 17 16 15 44 44 H 0.97002 * 119.99878 * 0.02562 * 20 18 17 45 45 H 0.97007 * 119.99855 * 180.02562 * 24 23 21 46 46 H 1.09007 * 110.66690 * 157.63812 * 29 16 15 47 47 H 1.08999 * 110.66701 * 280.76678 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1664 2.0436 -1.1643 5 8 2.6620 3.1531 -1.1734 6 6 1.7248 1.4192 -2.4332 7 6 1.9874 2.0474 -3.6501 8 7 1.5960 1.4843 -4.7789 9 6 0.9478 0.3331 -4.7547 10 6 0.6804 -0.2917 -3.5453 11 7 1.0725 0.2603 -2.4146 12 6 2.3457 2.0424 1.2657 13 1 2.1422 1.3816 2.1083 14 6 3.8210 2.5040 1.2762 15 6 3.8065 3.8820 1.9633 16 7 2.4051 4.1620 2.3443 17 6 2.1072 5.5966 2.2385 18 6 0.6536 5.8329 2.5581 19 8 -0.0721 4.8943 2.8109 20 7 0.1598 7.0869 2.5631 21 6 -1.1625 7.3019 2.8544 22 1 -1.8086 6.4662 3.0795 23 6 -1.6702 8.5953 2.8650 24 7 -0.8841 9.6119 2.5907 25 14 -3.4701 8.8887 3.2695 26 1 -4.1353 7.5887 3.5386 27 1 -3.5725 9.7558 4.4707 28 1 -4.1334 9.5551 2.1201 29 6 1.5652 3.3734 1.4069 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.5136 2.9903 -3.6699 36 1 0.6249 -0.1225 -5.6791 37 1 0.1499 -1.2323 -3.5304 38 1 4.1967 2.5934 0.2569 39 1 4.4338 1.8044 1.8446 40 1 4.1628 4.6456 1.2717 41 1 4.4364 3.8636 2.8526 42 1 2.3162 5.9372 1.2244 43 1 2.7287 6.1497 2.9428 44 1 0.7401 7.8374 2.3606 45 1 -1.2385 10.5149 2.5985 46 1 0.5769 3.1967 1.8314 47 1 1.4868 3.8775 0.4436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714029920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:20 Heat of formation + Delta-G solvation = -2.993992 kcal Electronic energy + Delta-G solvation = -31176.844916 eV Core-core repulsion = 26974.327964 eV Total energy + Delta-G solvation = -4202.516953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.52573 -41.27720 -40.23916 -38.65319 -37.15783 -35.97872 -35.30617 -33.44644 -33.08772 -32.45727 -30.99238 -29.45692 -28.28523 -26.59620 -25.92921 -25.54976 -24.30316 -22.95663 -22.17305 -21.07441 -20.68886 -19.89984 -18.79028 -18.50152 -17.97828 -17.70867 -17.21537 -16.86622 -16.65744 -16.44421 -16.28987 -15.88231 -15.66904 -15.40182 -15.26845 -14.99332 -14.78023 -14.65805 -14.41036 -13.90202 -13.83610 -13.58695 -13.52623 -13.23602 -12.94437 -12.86681 -12.78102 -12.56987 -12.43920 -12.42799 -12.35870 -12.15892 -12.12198 -11.98513 -11.50944 -11.45450 -11.07547 -10.53917 -10.29242 -10.05869 -10.04753 -9.70723 -9.37185 -8.49257 -5.98420 -0.69274 -0.02789 1.34032 1.38564 1.53593 1.54991 1.74185 2.00110 2.26236 2.65663 2.76186 2.91030 3.16142 3.16848 3.35463 3.39604 3.55214 3.66930 3.77640 4.03950 4.09474 4.20668 4.24190 4.28238 4.33117 4.36917 4.46472 4.48684 4.51531 4.54842 4.66562 4.75633 4.83234 4.90859 5.03150 5.07427 5.12119 5.18870 5.24740 5.37905 5.51584 5.56587 5.81217 5.92580 6.03482 6.06307 6.23929 6.56709 6.58989 6.93907 7.09134 7.51254 8.06834 8.68777 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002802 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.688657 B = 9990.187096 C =10934.852350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.111 3.889 3 N -0.582 5.582 4 C 0.563 3.437 5 O -0.556 6.556 6 C 0.008 3.992 7 C 0.097 3.903 8 N -0.464 5.464 9 C 0.084 3.916 10 C 0.053 3.947 11 N -0.404 5.404 12 C 0.147 3.853 13 H 0.121 0.879 14 C -0.126 4.126 15 C 0.040 3.960 16 N -0.503 5.503 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.271 1.271 29 C 0.038 3.962 30 H 0.089 0.911 31 H 0.028 0.972 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.169 0.831 36 H 0.217 0.783 37 H 0.223 0.777 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.113 0.887 44 H 0.395 0.605 45 H 0.278 0.722 46 H 0.069 0.931 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 -23.861 -12.495 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 N -0.312 5.312 4 C 0.350 3.650 5 O -0.434 6.434 6 C -0.130 4.130 7 C -0.061 4.061 8 N -0.178 5.178 9 C -0.078 4.078 10 C -0.111 4.111 11 N -0.122 5.122 12 C 0.043 3.957 13 H 0.139 0.861 14 C -0.165 4.165 15 C -0.088 4.088 16 N -0.227 5.227 17 C -0.082 4.082 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.819 3.181 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.196 1.196 29 C -0.091 4.091 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.186 0.814 36 H 0.233 0.767 37 H 0.240 0.760 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.131 0.869 44 H 0.228 0.772 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.241 -23.783 -11.728 27.768 hybrid contribution -0.580 1.599 -0.744 1.856 sum 7.661 -22.184 -12.472 26.577 Atomic orbital electron populations 1.22043 0.95735 1.02887 1.00173 1.22100 0.94914 0.79456 1.04545 1.47986 1.63206 1.15539 1.04509 1.18102 0.78658 0.84627 0.83583 1.90772 1.45275 1.20519 1.86860 1.21881 1.01290 0.95097 0.94775 1.23687 0.95008 0.99836 0.87563 1.68674 1.09259 1.10986 1.28911 1.24907 0.90850 0.90042 1.02036 1.24793 0.96573 1.02065 0.87627 1.68983 1.05431 1.07023 1.30774 1.22099 0.94709 0.93375 0.85480 0.86094 1.22669 0.95721 0.96498 1.01603 1.22925 0.89289 0.96797 0.99782 1.64531 1.04324 1.04827 1.49052 1.21942 0.93514 0.91408 1.01314 1.20630 0.90578 0.82985 0.82883 1.90433 1.61718 1.42595 1.55128 1.41928 1.10442 1.06895 1.61822 1.19704 0.86581 0.93710 1.46167 0.90273 1.26097 1.04492 0.94249 0.96598 1.69693 1.37804 0.99766 1.48999 0.84839 0.76698 0.78255 0.78335 1.19697 1.19316 1.19604 1.23406 0.97919 0.94069 0.93709 0.89208 0.95261 0.93545 0.87210 0.88964 0.81375 0.76658 0.76025 0.91157 0.88055 0.94084 0.88199 0.92806 0.86885 0.77151 0.91259 0.91262 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.53 71.98 0.69 -2.13 16 2 C 0.11 1.93 5.67 86.38 0.49 2.42 16 3 N -0.58 -14.49 2.55 -794.20 -2.02 -16.52 16 4 C 0.56 16.10 6.76 86.88 0.59 16.69 16 5 O -0.56 -19.44 12.70 -3.78 -0.05 -19.49 16 6 C 0.01 0.18 6.51 41.89 0.27 0.45 16 7 C 0.10 2.20 10.77 84.95 0.92 3.12 16 8 N -0.46 -8.78 10.49 -194.12 -2.04 -10.82 16 9 C 0.08 0.85 11.23 84.76 0.95 1.80 16 10 C 0.05 0.48 11.22 84.82 0.95 1.43 16 11 N -0.40 -6.74 4.18 -184.34 -0.77 -7.51 16 12 C 0.15 4.07 3.55 46.19 0.16 4.23 16 13 H 0.12 2.92 7.83 -2.39 -0.02 2.90 16 14 C -0.13 -3.12 6.14 31.47 0.19 -2.92 16 15 C 0.04 1.12 6.70 86.44 0.58 1.70 16 16 N -0.50 -18.63 5.16 -887.58 -4.58 -23.20 16 17 C 0.05 2.02 5.30 85.56 0.45 2.47 16 18 C 0.44 22.91 7.54 87.66 0.66 23.57 16 19 O -0.61 -35.58 13.52 -3.09 -0.04 -35.62 16 20 N -0.57 -31.58 5.29 -306.98 -1.62 -33.21 16 21 C -0.33 -19.75 9.68 84.04 0.81 -18.94 16 22 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 23 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.92 -51.81 13.05 21.66 0.28 -51.53 16 25 Si 1.00 44.43 29.55 68.60 2.03 46.46 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 29 C 0.04 1.45 4.88 86.65 0.42 1.88 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 1.02 6.29 -2.38 -0.01 1.00 16 33 H 0.11 1.67 5.65 -2.39 -0.01 1.65 16 34 H 0.09 1.23 7.88 -2.39 -0.02 1.21 16 35 H 0.17 4.03 7.66 -2.91 -0.02 4.00 16 36 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 37 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.07 1.92 6.15 -2.38 -0.01 1.90 16 39 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.04 1.20 7.68 -2.39 -0.02 1.18 16 41 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.05 2.15 7.99 -2.39 -0.02 2.13 16 43 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 44 H 0.39 20.84 7.90 -92.71 -0.73 20.10 16 45 H 0.28 14.52 8.31 -92.70 -0.77 13.75 16 46 H 0.07 3.18 6.23 -2.38 -0.01 3.17 16 47 H 0.03 1.24 5.81 -2.39 -0.01 1.22 16 Total: -1.00 -79.88 378.15 0.08 -79.80 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.28 Total: 36.22 kcal Atomic # 6 Polarization: 26.81 SS G_CDS: 8.61 Total: 35.42 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -10.75 Total: -142.78 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.09 Total: -55.12 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -79.88 0.08 -79.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714029920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.804 kcal (2) G-P(sol) polarization free energy of solvation -79.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds