Wall clock time and date at job start Wed Apr 1 2020 04:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46785 * 2 1 4 4 C 1.34781 * 119.99897 * 269.99329 * 3 2 1 5 5 O 1.21283 * 119.99972 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99860 * 0.02562 * 4 3 2 7 7 C 1.53001 * 109.46678 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46987 * 180.02562 * 7 6 4 9 9 F 1.39897 * 109.47198 * 64.99438 * 8 7 6 10 10 F 1.39900 * 109.47548 * 185.00059 * 8 7 6 11 11 C 1.46502 * 120.00103 * 89.99942 * 3 2 1 12 12 H 1.09002 * 110.27410 * 359.29674 * 11 3 2 13 13 C 1.54598 * 110.39108 * 237.14890 * 11 3 2 14 14 C 1.54932 * 102.92273 * 219.07959 * 13 11 3 15 15 N 1.48539 * 103.22489 * 37.41993 * 14 13 11 16 16 C 1.46900 * 110.99796 * 200.27757 * 15 14 13 17 17 C 1.50700 * 109.47058 * 287.39527 * 16 15 14 18 18 O 1.21295 * 120.00187 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99985 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99854 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99760 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99931 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00146 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46825 * 90.00660 * 24 22 20 26 26 H 1.48501 * 109.47362 * 210.00393 * 24 22 20 27 27 H 1.48502 * 109.47150 * 330.00849 * 24 22 20 28 28 C 1.47897 * 105.81843 * 320.78612 * 15 14 13 29 29 H 1.09007 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47852 * 300.00365 * 1 2 3 31 31 H 1.09008 * 109.47046 * 60.00608 * 1 2 3 32 32 H 1.08992 * 109.47338 * 239.99927 * 2 1 3 33 33 H 1.09002 * 109.46632 * 119.99537 * 2 1 3 34 34 H 1.08999 * 109.46912 * 299.99547 * 6 4 3 35 35 H 1.08998 * 109.47090 * 60.00158 * 6 4 3 36 36 H 1.08999 * 109.47193 * 299.99514 * 7 6 4 37 37 H 1.08998 * 109.47117 * 60.00314 * 7 6 4 38 38 H 1.09003 * 109.46675 * 305.00179 * 8 7 6 39 39 H 1.08994 * 110.72376 * 337.44511 * 13 11 3 40 40 H 1.09002 * 110.71797 * 100.72418 * 13 11 3 41 41 H 1.08999 * 110.67033 * 278.98382 * 14 13 11 42 42 H 1.09005 * 110.81115 * 155.91631 * 14 13 11 43 43 H 1.09002 * 109.47432 * 47.39063 * 16 15 14 44 44 H 1.08997 * 109.47479 * 167.39388 * 16 15 14 45 45 H 0.96997 * 119.99950 * 359.97438 * 19 17 16 46 46 H 0.97005 * 119.99888 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.92227 * 265.97847 * 28 15 14 48 48 H 1.08999 * 109.91658 * 144.68234 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2429 2.0166 -1.1673 5 8 2.6476 3.1599 -1.1673 6 6 1.9914 1.3062 -2.4723 7 6 2.3224 2.2438 -3.6352 8 6 2.0664 1.5229 -4.9603 9 9 0.7007 1.2467 -5.0846 10 9 2.4760 2.3376 -6.0212 11 6 2.2624 2.0719 1.2687 12 1 2.0184 1.4194 2.1071 13 6 1.4312 3.3734 1.3422 14 6 2.4053 4.3687 2.0211 15 7 3.7231 4.0037 1.4410 16 6 4.8227 4.4878 2.2863 17 6 4.9355 5.9849 2.1551 18 8 4.1750 6.5890 1.4284 19 7 5.8820 6.6524 2.8443 20 6 5.9843 8.0143 2.7253 21 1 5.3066 8.5523 2.0789 22 6 6.9604 8.7024 3.4354 23 7 7.0582 10.0079 3.3217 24 14 8.1330 7.7718 4.5529 25 1 9.3343 7.3646 3.7806 26 1 8.5426 8.6476 5.6800 27 1 7.4543 6.5634 5.0862 28 6 3.7309 2.5272 1.3556 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.6214 0.4186 -2.5301 35 1 0.9433 1.0125 -2.5299 36 1 1.6921 3.1312 -3.5772 37 1 3.3704 2.5380 -3.5778 38 1 2.6291 0.5896 -4.9806 39 1 1.1632 3.7167 0.3430 40 1 0.5403 3.2281 1.9532 41 1 2.4083 4.2275 3.1019 42 1 2.1459 5.3971 1.7695 43 1 4.6231 4.2284 3.3260 44 1 5.7565 4.0239 1.9689 45 1 6.4903 6.1692 3.4251 46 1 7.7394 10.4883 3.8178 47 1 4.1982 2.1061 2.2458 48 1 4.2714 2.2097 0.4639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714045707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:18 Heat of formation + Delta-G solvation = -155.735605 kcal Electronic energy + Delta-G solvation = -31472.816048 eV Core-core repulsion = 26812.986535 eV Total energy + Delta-G solvation = -4659.829512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.21869 -47.23122 -40.67419 -38.72398 -37.42106 -35.96748 -34.13268 -33.80268 -31.95268 -31.50874 -30.26642 -28.60271 -27.45073 -26.29856 -24.00961 -23.80095 -22.70266 -21.27435 -21.09034 -19.26515 -18.93376 -18.26129 -17.92336 -17.57169 -17.17937 -16.76389 -16.03329 -15.88788 -15.77073 -15.26360 -14.72315 -14.55784 -14.36888 -14.25706 -14.17459 -13.92348 -13.73880 -13.56649 -13.34617 -13.19400 -12.95349 -12.73104 -12.62182 -12.51286 -12.33587 -12.09287 -11.93847 -11.86224 -11.73708 -11.62946 -11.44589 -11.37066 -11.17990 -11.16042 -10.89244 -10.72058 -10.53936 -9.90274 -9.61062 -9.46979 -8.84101 -8.44174 -8.08938 -7.84780 -6.23211 -3.73903 2.55605 2.65995 3.06857 3.11501 3.18940 3.51302 3.85768 3.87249 4.10296 4.13606 4.16933 4.22382 4.39571 4.48962 4.59036 4.70190 4.76255 4.85197 4.90044 4.91623 4.96989 5.05350 5.08752 5.26573 5.28822 5.36995 5.40091 5.45968 5.51375 5.61874 5.72344 5.72871 5.77925 5.80130 5.83474 5.90072 6.03450 6.21757 6.49163 6.55785 7.16824 7.27717 7.30372 7.67814 8.13637 8.23875 8.70078 9.04768 9.51691 9.95292 10.90355 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002394 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.587085 B =11694.546746 C =13064.260946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.105 3.895 3 N -0.612 5.612 4 C 0.502 3.498 5 O -0.485 6.485 6 C -0.140 4.140 7 C -0.158 4.158 8 C 0.262 3.738 9 F -0.208 7.208 10 F -0.204 7.204 11 C 0.142 3.858 12 H 0.091 0.909 13 C -0.130 4.130 14 C 0.046 3.954 15 N -0.471 5.471 16 C 0.033 3.967 17 C 0.457 3.543 18 O -0.552 6.552 19 N -0.597 5.597 20 C -0.300 4.300 21 H 0.119 0.881 22 C 0.039 3.961 23 N -0.885 5.885 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.271 1.271 28 C 0.035 3.965 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.035 0.965 42 H 0.098 0.902 43 H 0.048 0.952 44 H 0.086 0.914 45 H 0.369 0.631 46 H 0.272 0.728 47 H 0.041 0.959 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.242 -28.650 -7.150 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.019 4.019 3 N -0.348 5.348 4 C 0.289 3.711 5 O -0.357 6.357 6 C -0.180 4.180 7 C -0.197 4.197 8 C 0.209 3.791 9 F -0.190 7.190 10 F -0.186 7.186 11 C 0.038 3.962 12 H 0.109 0.891 13 C -0.169 4.169 14 C -0.082 4.082 15 N -0.195 5.195 16 C -0.099 4.099 17 C 0.242 3.758 18 O -0.433 6.433 19 N -0.237 5.237 20 C -0.429 4.429 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.526 5.526 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.196 1.196 28 C -0.094 4.094 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.201 0.799 46 H 0.083 0.917 47 H 0.059 0.941 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.365 -27.137 -8.145 30.527 hybrid contribution 0.927 -1.090 1.811 2.308 sum -10.438 -28.226 -6.334 30.754 Atomic orbital electron populations 1.22247 0.95846 1.02235 1.02858 1.21582 0.94528 0.82546 1.03205 1.48073 1.67119 1.13928 1.05640 1.20415 0.78558 0.87324 0.84836 1.90965 1.41730 1.16366 1.86659 1.21645 1.04300 0.99450 0.92634 1.22437 1.06593 1.00004 0.90634 1.21944 0.77597 0.93935 0.85649 1.92981 1.34906 1.94540 1.96552 1.93005 1.90132 1.75821 1.59621 1.21912 0.95305 0.94133 0.84856 0.89107 1.22849 0.97175 0.94002 1.02825 1.23190 0.88482 1.01280 0.95229 1.64450 1.01383 1.07214 1.46457 1.22121 0.96218 0.96174 0.95403 1.19631 0.83926 0.87941 0.84284 1.90568 1.43666 1.68967 1.40059 1.42212 1.31139 1.08264 1.42109 1.19427 1.16805 0.80214 1.26465 0.86333 1.25021 0.97729 0.95512 0.98048 1.69627 1.34505 1.06228 1.42207 0.86673 0.81799 0.79746 0.81144 1.19698 1.20304 1.19619 1.23152 0.95639 0.89790 1.00867 0.91537 0.92112 0.92277 0.90339 0.90344 0.88674 0.88341 0.88401 0.87628 0.87357 0.89233 0.91586 0.94726 0.88343 0.93457 0.89534 0.79882 0.91750 0.94089 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 37.16 0.38 -0.41 16 2 C 0.10 0.50 5.91 -4.04 -0.02 0.48 16 3 N -0.61 -5.31 2.45 -164.56 -0.40 -5.71 16 4 C 0.50 5.37 6.55 -10.98 -0.07 5.30 16 5 O -0.49 -7.73 12.84 5.55 0.07 -7.66 16 6 C -0.14 -0.95 4.17 -27.88 -0.12 -1.06 16 7 C -0.16 -1.32 4.73 -26.73 -0.13 -1.44 16 8 C 0.26 1.89 5.29 37.16 0.20 2.09 16 9 F -0.21 -1.83 17.01 2.25 0.04 -1.79 16 10 F -0.20 -2.08 17.34 2.25 0.04 -2.04 16 11 C 0.14 1.47 3.45 -66.57 -0.23 1.25 16 12 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 13 C -0.13 -1.66 6.25 -24.87 -0.16 -1.82 16 14 C 0.05 0.75 5.94 -1.90 -0.01 0.74 16 15 N -0.47 -8.20 4.55 -231.89 -1.05 -9.26 16 16 C 0.03 0.59 5.19 -4.98 -0.03 0.57 16 17 C 0.46 10.97 7.61 -10.98 -0.08 10.89 16 18 O -0.55 -15.65 14.64 5.54 0.08 -15.57 16 19 N -0.60 -14.83 5.09 -10.96 -0.06 -14.89 16 20 C -0.30 -8.78 10.16 -14.93 -0.15 -8.94 16 21 H 0.12 3.96 7.39 -52.49 -0.39 3.58 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 23 N -0.89 -26.56 13.96 55.50 0.77 -25.78 16 24 Si 0.88 19.92 27.74 -169.99 -4.71 15.20 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -5.58 6.52 56.52 0.37 -5.21 16 28 C 0.03 0.45 5.50 -2.75 -0.02 0.44 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 7.22 -51.92 -0.37 -0.06 16 32 H 0.08 0.24 6.44 -51.93 -0.33 -0.09 16 33 H 0.08 0.30 7.95 -51.93 -0.41 -0.12 16 34 H 0.09 0.38 7.40 -51.93 -0.38 -0.01 16 35 H 0.10 0.55 6.98 -51.93 -0.36 0.19 16 36 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 1.37 6.17 -51.93 -0.32 1.05 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.03 0.51 7.81 -51.93 -0.41 0.11 16 42 H 0.10 1.97 7.10 -51.93 -0.37 1.60 16 43 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 44 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 45 H 0.37 8.04 5.76 -40.82 -0.24 7.81 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.04 0.46 7.77 -51.93 -0.40 0.05 16 48 H 0.08 1.10 7.14 -51.93 -0.37 0.73 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -37.35 388.80 -7.19 -44.54 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.29 Total: 8.01 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -0.53 Total: 9.08 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.74 Total: -55.65 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.15 Total: -23.22 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.83 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.71 Total: 15.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.35 -7.19 -44.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714045707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.194 kcal (2) G-P(sol) polarization free energy of solvation -37.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds