Wall clock time and date at job start Wed Apr 1 2020 04:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.46785 * 2 1 4 4 C 1.34781 * 119.99897 * 269.99329 * 3 2 1 5 5 O 1.21283 * 119.99972 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99860 * 0.02562 * 4 3 2 7 7 C 1.53001 * 109.46678 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.46987 * 180.02562 * 7 6 4 9 9 F 1.39897 * 109.47198 * 64.99438 * 8 7 6 10 10 F 1.39900 * 109.47548 * 185.00059 * 8 7 6 11 11 C 1.46502 * 120.00103 * 89.99942 * 3 2 1 12 12 H 1.09002 * 110.27410 * 359.29674 * 11 3 2 13 13 C 1.54598 * 110.39108 * 237.14890 * 11 3 2 14 14 C 1.54932 * 102.92273 * 219.07959 * 13 11 3 15 15 N 1.48539 * 103.22489 * 37.41993 * 14 13 11 16 16 C 1.46900 * 110.99796 * 200.27757 * 15 14 13 17 17 C 1.50700 * 109.47058 * 287.39527 * 16 15 14 18 18 O 1.21295 * 120.00187 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99985 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99854 * 180.02562 * 19 17 16 21 21 H 1.07997 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99760 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99931 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00146 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46825 * 90.00660 * 24 22 20 26 26 H 1.48501 * 109.47362 * 210.00393 * 24 22 20 27 27 H 1.48502 * 109.47150 * 330.00849 * 24 22 20 28 28 C 1.47897 * 105.81843 * 320.78612 * 15 14 13 29 29 H 1.09007 * 109.46765 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47852 * 300.00365 * 1 2 3 31 31 H 1.09008 * 109.47046 * 60.00608 * 1 2 3 32 32 H 1.08992 * 109.47338 * 239.99927 * 2 1 3 33 33 H 1.09002 * 109.46632 * 119.99537 * 2 1 3 34 34 H 1.08999 * 109.46912 * 299.99547 * 6 4 3 35 35 H 1.08998 * 109.47090 * 60.00158 * 6 4 3 36 36 H 1.08999 * 109.47193 * 299.99514 * 7 6 4 37 37 H 1.08998 * 109.47117 * 60.00314 * 7 6 4 38 38 H 1.09003 * 109.46675 * 305.00179 * 8 7 6 39 39 H 1.08994 * 110.72376 * 337.44511 * 13 11 3 40 40 H 1.09002 * 110.71797 * 100.72418 * 13 11 3 41 41 H 1.08999 * 110.67033 * 278.98382 * 14 13 11 42 42 H 1.09005 * 110.81115 * 155.91631 * 14 13 11 43 43 H 1.09002 * 109.47432 * 47.39063 * 16 15 14 44 44 H 1.08997 * 109.47479 * 167.39388 * 16 15 14 45 45 H 0.96997 * 119.99950 * 359.97438 * 19 17 16 46 46 H 0.97005 * 119.99888 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.92227 * 265.97847 * 28 15 14 48 48 H 1.08999 * 109.91658 * 144.68234 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2429 2.0166 -1.1673 5 8 2.6476 3.1599 -1.1673 6 6 1.9914 1.3062 -2.4723 7 6 2.3224 2.2438 -3.6352 8 6 2.0664 1.5229 -4.9603 9 9 0.7007 1.2467 -5.0846 10 9 2.4760 2.3376 -6.0212 11 6 2.2624 2.0719 1.2687 12 1 2.0184 1.4194 2.1071 13 6 1.4312 3.3734 1.3422 14 6 2.4053 4.3687 2.0211 15 7 3.7231 4.0037 1.4410 16 6 4.8227 4.4878 2.2863 17 6 4.9355 5.9849 2.1551 18 8 4.1750 6.5890 1.4284 19 7 5.8820 6.6524 2.8443 20 6 5.9843 8.0143 2.7253 21 1 5.3066 8.5523 2.0789 22 6 6.9604 8.7024 3.4354 23 7 7.0582 10.0079 3.3217 24 14 8.1330 7.7718 4.5529 25 1 9.3343 7.3646 3.7806 26 1 8.5426 8.6476 5.6800 27 1 7.4543 6.5634 5.0862 28 6 3.7309 2.5272 1.3556 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.6214 0.4186 -2.5301 35 1 0.9433 1.0125 -2.5299 36 1 1.6921 3.1312 -3.5772 37 1 3.3704 2.5380 -3.5778 38 1 2.6291 0.5896 -4.9806 39 1 1.1632 3.7167 0.3430 40 1 0.5403 3.2281 1.9532 41 1 2.4083 4.2275 3.1019 42 1 2.1459 5.3971 1.7695 43 1 4.6231 4.2284 3.3260 44 1 5.7565 4.0239 1.9689 45 1 6.4903 6.1692 3.4251 46 1 7.7394 10.4883 3.8178 47 1 4.1982 2.1061 2.2458 48 1 4.2714 2.2097 0.4639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714045707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:14 Heat of formation + Delta-G solvation = -184.780840 kcal Electronic energy + Delta-G solvation = -31474.075543 eV Core-core repulsion = 26812.986535 eV Total energy + Delta-G solvation = -4661.089008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -49.87871 -47.91128 -41.53361 -40.35978 -38.78009 -36.75281 -35.95599 -34.79417 -33.77967 -32.86265 -31.01262 -29.53831 -28.66324 -27.42758 -25.79373 -24.30328 -23.36228 -22.40428 -22.06796 -21.25612 -20.22726 -19.67278 -18.53823 -18.28996 -17.91952 -17.79228 -17.38941 -16.96479 -16.69350 -16.51811 -16.21631 -16.00253 -15.53908 -15.13473 -14.94258 -14.81834 -14.67411 -14.53980 -14.51061 -14.34330 -14.25185 -14.07660 -13.72903 -13.46019 -13.22750 -13.16837 -13.00552 -12.92196 -12.69526 -12.63084 -12.45530 -12.40929 -12.26130 -12.07489 -11.99500 -11.97931 -11.80602 -11.62667 -11.49481 -10.48773 -10.39694 -10.24651 -9.55852 -9.12540 -8.41809 -6.02797 1.28109 1.34979 1.43549 1.79458 1.97087 2.00633 2.22524 2.70283 2.93563 3.13525 3.28525 3.35880 3.53266 3.62842 3.70787 3.73490 3.87756 4.07447 4.17852 4.22748 4.24888 4.29202 4.32742 4.37791 4.44013 4.49177 4.49637 4.55585 4.65603 4.68784 4.82259 4.88643 4.93276 5.05028 5.05946 5.07010 5.11047 5.22737 5.47051 5.52911 5.78891 5.91131 6.03901 6.15883 6.54634 6.60704 6.88771 7.39918 7.40191 7.99640 8.76458 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002394 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.587085 B =11694.546746 C =13064.260946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.494 3.506 5 O -0.551 6.551 6 C -0.129 4.129 7 C -0.157 4.157 8 C 0.263 3.737 9 F -0.217 7.217 10 F -0.225 7.225 11 C 0.149 3.851 12 H 0.133 0.867 13 C -0.121 4.121 14 C 0.046 3.954 15 N -0.509 5.509 16 C 0.046 3.954 17 C 0.451 3.549 18 O -0.608 6.608 19 N -0.594 5.594 20 C -0.328 4.328 21 H 0.050 0.950 22 C -0.018 4.018 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.257 1.257 26 H -0.273 1.273 27 H -0.230 1.230 28 C 0.038 3.962 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.160 0.840 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.072 0.928 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 -34.699 -5.071 36.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.283 3.717 5 O -0.428 6.428 6 C -0.169 4.169 7 C -0.196 4.196 8 C 0.210 3.790 9 F -0.198 7.198 10 F -0.207 7.207 11 C 0.045 3.955 12 H 0.150 0.850 13 C -0.160 4.160 14 C -0.082 4.082 15 N -0.234 5.234 16 C -0.085 4.085 17 C 0.239 3.761 18 O -0.491 6.491 19 N -0.236 5.236 20 C -0.457 4.457 21 H 0.068 0.932 22 C -0.216 4.216 23 N -0.578 5.578 24 Si 0.789 3.211 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.154 1.154 28 C -0.090 4.090 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.155 0.845 35 H 0.133 0.867 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.177 0.823 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.131 0.869 45 H 0.225 0.775 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.366 -33.265 -6.063 35.366 hybrid contribution 0.485 0.891 1.066 1.472 sum -9.880 -32.374 -4.996 34.214 Atomic orbital electron populations 1.22227 0.95737 1.03211 1.01808 1.21922 0.94514 0.80173 1.05555 1.48168 1.66072 1.15300 1.04426 1.21124 0.77315 0.86700 0.86559 1.90956 1.44884 1.19285 1.87668 1.21650 1.06102 0.99659 0.89451 1.22358 1.04984 0.99610 0.92616 1.22326 0.77527 0.95195 0.83971 1.92961 1.35860 1.94521 1.96493 1.92964 1.90318 1.76799 1.60571 1.21907 0.92995 0.93611 0.87035 0.84967 1.22732 0.97732 0.94659 1.00899 1.23044 0.89458 0.99206 0.96510 1.64263 1.01284 1.10697 1.47153 1.22022 0.97977 0.90707 0.97817 1.20978 0.82103 0.90802 0.82247 1.90554 1.45475 1.71026 1.42078 1.42022 1.32083 1.06572 1.42971 1.18980 1.17103 0.82481 1.27151 0.93209 1.26164 0.99417 0.96537 0.99477 1.69819 1.35710 1.08815 1.43474 0.85312 0.78523 0.79287 0.78025 1.18157 1.19803 1.15356 1.23183 0.97552 0.86646 1.01618 0.89495 0.93171 0.93423 0.87903 0.88152 0.84546 0.86688 0.91913 0.88960 0.82349 0.92671 0.89077 0.92797 0.94049 0.89856 0.86882 0.77515 0.91142 0.90963 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 71.98 0.74 -0.19 16 2 C 0.10 0.48 5.91 86.38 0.51 0.99 16 3 N -0.61 -8.81 2.45 -792.94 -1.94 -10.75 16 4 C 0.49 10.18 6.55 87.66 0.57 10.76 16 5 O -0.55 -18.54 12.84 -3.04 -0.04 -18.58 16 6 C -0.13 -1.47 4.17 29.85 0.12 -1.35 16 7 C -0.16 -2.65 4.73 30.60 0.14 -2.50 16 8 C 0.26 3.43 5.29 71.98 0.38 3.81 16 9 F -0.22 -3.52 17.01 44.97 0.77 -2.76 16 10 F -0.23 -4.57 17.34 44.97 0.78 -3.79 16 11 C 0.15 2.66 3.45 45.87 0.16 2.81 16 12 H 0.13 1.34 7.85 -2.39 -0.02 1.32 16 13 C -0.12 -3.08 6.25 31.80 0.20 -2.88 16 14 C 0.05 1.54 5.94 86.65 0.51 2.05 16 15 N -0.51 -17.63 4.55 -887.57 -4.03 -21.66 16 16 C 0.05 1.59 5.19 85.56 0.44 2.04 16 17 C 0.45 22.34 7.61 87.66 0.67 23.01 16 18 O -0.61 -37.25 14.64 -3.08 -0.05 -37.30 16 19 N -0.59 -29.90 5.09 -306.98 -1.56 -31.47 16 20 C -0.33 -20.27 10.16 84.04 0.85 -19.41 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -1.03 5.50 84.93 0.47 -0.57 16 23 N -0.94 -58.61 13.96 21.66 0.30 -58.30 16 24 Si 0.97 40.16 27.74 68.60 1.90 42.06 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 28 C 0.04 0.89 5.50 86.45 0.48 1.36 16 29 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.38 7.22 -2.38 -0.02 0.36 16 32 H 0.10 0.05 6.44 -2.39 -0.02 0.03 16 33 H 0.10 0.14 7.95 -2.39 -0.02 0.12 16 34 H 0.14 0.44 7.40 -2.39 -0.02 0.43 16 35 H 0.12 0.98 6.98 -2.39 -0.02 0.96 16 36 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.16 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.05 1.80 6.17 -2.39 -0.01 1.78 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.05 1.54 7.81 -2.39 -0.02 1.53 16 42 H 0.04 1.83 7.10 -2.38 -0.02 1.81 16 43 H 0.08 2.29 7.83 -2.39 -0.02 2.27 16 44 H 0.11 3.29 8.08 -2.39 -0.02 3.27 16 45 H 0.39 16.11 5.76 -92.71 -0.53 15.58 16 46 H 0.28 15.87 8.31 -92.70 -0.77 15.10 16 47 H 0.07 1.24 7.77 -2.39 -0.02 1.22 16 48 H 0.07 1.72 7.14 -2.39 -0.02 1.71 16 Total: -1.00 -95.38 388.80 2.77 -92.61 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.39 Total: 30.01 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 6.25 Total: 19.92 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -7.24 Total: -122.19 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.08 Total: -55.88 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.54 Total: -6.55 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 1.90 Total: 42.06 kcal Total: -95.38 2.77 -92.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714045707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.168 kcal (2) G-P(sol) polarization free energy of solvation -95.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds