Wall clock time and date at job start Wed Apr 1 2020 04:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47058 * 2 1 4 4 C 1.34783 * 119.99828 * 84.52522 * 3 2 1 5 5 O 1.21283 * 119.99746 * 175.31720 * 4 3 2 6 6 C 1.50698 * 120.00120 * 355.31613 * 4 3 2 7 7 C 1.52999 * 109.47285 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47312 * 180.02562 * 7 6 4 9 9 F 1.39897 * 109.47299 * 174.99724 * 8 7 6 10 10 F 1.39900 * 109.46723 * 294.99781 * 8 7 6 11 11 C 1.46501 * 120.00368 * 264.52293 * 3 2 1 12 12 H 1.08999 * 110.27789 * 186.38362 * 11 3 2 13 13 C 1.54590 * 110.30910 * 308.47407 * 11 3 2 14 14 C 1.55194 * 102.80246 * 96.97921 * 13 11 3 15 15 N 1.48527 * 103.23762 * 37.43513 * 14 13 11 16 16 C 1.46901 * 111.00239 * 200.25825 * 15 14 13 17 17 C 1.50706 * 109.47114 * 307.39769 * 16 15 14 18 18 O 1.21300 * 119.99687 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00508 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00252 * 179.97438 * 19 17 16 21 21 H 1.07990 * 120.00060 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99937 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99957 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99795 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47172 * 90.00199 * 24 22 20 26 26 H 1.48504 * 109.46833 * 210.00111 * 24 22 20 27 27 H 1.48499 * 109.47319 * 329.99875 * 24 22 20 28 28 C 1.47900 * 105.81915 * 320.76887 * 15 14 13 29 29 H 1.08999 * 109.47118 * 304.46671 * 1 2 3 30 30 H 1.09007 * 109.47102 * 64.46879 * 1 2 3 31 31 H 1.09001 * 109.47317 * 184.46146 * 1 2 3 32 32 H 1.09005 * 109.47464 * 240.00363 * 2 1 3 33 33 H 1.09000 * 109.47040 * 120.00036 * 2 1 3 34 34 H 1.08999 * 109.47264 * 59.99856 * 6 4 3 35 35 H 1.09001 * 109.46790 * 300.00168 * 6 4 3 36 36 H 1.09003 * 109.46566 * 299.99562 * 7 6 4 37 37 H 1.08999 * 109.47356 * 59.99584 * 7 6 4 38 38 H 1.09003 * 109.47116 * 54.99010 * 8 7 6 39 39 H 1.08999 * 110.72869 * 215.31724 * 13 11 3 40 40 H 1.09000 * 110.72533 * 338.60099 * 13 11 3 41 41 H 1.09004 * 110.68327 * 278.98602 * 14 13 11 42 42 H 1.08999 * 110.78717 * 155.93330 * 14 13 11 43 43 H 1.09004 * 109.47486 * 67.38966 * 16 15 14 44 44 H 1.08991 * 109.47484 * 187.39370 * 16 15 14 45 45 H 0.97000 * 119.99666 * 359.97438 * 19 17 16 46 46 H 0.96993 * 120.00052 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.91853 * 265.97749 * 28 15 14 48 48 H 1.09009 * 110.08171 * 144.77525 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1379 2.0536 1.1619 5 8 2.6215 3.1659 1.1719 6 6 1.6708 1.4236 2.4487 7 6 1.9181 2.3898 3.6089 8 6 1.4445 1.7499 4.9154 9 9 1.7737 2.5838 5.9894 10 9 0.0575 1.5718 4.8714 11 6 2.3767 2.0315 -1.2629 12 1 2.8233 3.0073 -1.0719 13 6 3.3534 1.1423 -2.0661 14 6 2.4120 0.4018 -3.0530 15 7 1.4098 1.4385 -3.4097 16 6 0.1847 0.8259 -3.9404 17 6 0.5390 -0.1143 -5.0636 18 8 1.6982 -0.2594 -5.3902 19 7 -0.4319 -0.7940 -5.7053 20 6 -0.1096 -1.6489 -6.7274 21 1 0.9223 -1.7774 -7.0187 22 6 -1.1108 -2.3492 -7.3893 23 7 -0.8018 -3.1682 -8.3693 24 14 -2.8958 -2.1263 -6.8858 25 1 -3.4965 -1.0175 -7.6700 26 1 -3.6447 -3.3813 -7.1491 27 1 -2.9651 -1.8030 -5.4381 28 6 1.1335 2.1791 -2.1596 29 1 -0.3633 0.5816 0.8473 30 1 -0.3634 0.4430 -0.9274 31 1 -0.3634 -1.0245 0.0799 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2218 0.4991 2.6216 35 1 0.6053 1.2041 2.3799 36 1 2.9835 2.6096 3.6778 37 1 1.3669 3.3141 3.4359 38 1 1.9310 0.7830 5.0437 39 1 4.0761 1.7536 -2.6065 40 1 3.8596 0.4346 -1.4095 41 1 1.9314 -0.4457 -2.5642 42 1 2.9587 0.0748 -3.9375 43 1 -0.3174 0.2715 -3.1474 44 1 -0.4787 1.6055 -4.3147 45 1 -1.3588 -0.6782 -5.4439 46 1 -1.5006 -3.6574 -8.8311 47 1 0.2630 1.7534 -1.6606 48 1 0.9572 3.2321 -2.3796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714045708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:29 Heat of formation + Delta-G solvation = -155.281436 kcal Electronic energy + Delta-G solvation = -31490.965492 eV Core-core repulsion = 26831.155674 eV Total energy + Delta-G solvation = -4659.809818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -49.36542 -47.37756 -40.84731 -39.16931 -37.83092 -35.65164 -34.34876 -33.97758 -32.10841 -31.67720 -30.38077 -28.79749 -27.67167 -26.47508 -24.10358 -23.79249 -22.85458 -21.28182 -20.97624 -19.55420 -19.19651 -18.39244 -18.09551 -17.92763 -17.53563 -16.74646 -16.29226 -16.02978 -15.85971 -15.24491 -14.98461 -14.81829 -14.61783 -14.38540 -14.21181 -13.94673 -13.83358 -13.71656 -13.56968 -13.31964 -13.10243 -12.78353 -12.72743 -12.61929 -12.49479 -12.17572 -12.13402 -11.98454 -11.88414 -11.73065 -11.40829 -11.36248 -11.32951 -11.17059 -10.88612 -10.72238 -10.63881 -10.03811 -10.02657 -9.61411 -9.03715 -8.55585 -8.25748 -8.03307 -6.37155 -3.88799 2.26198 2.54565 2.96742 3.02289 3.10656 3.36063 3.64802 3.73784 3.96048 4.01942 4.05404 4.07405 4.28188 4.49750 4.50919 4.57686 4.61971 4.73958 4.79440 4.88093 4.92605 5.02300 5.06730 5.15349 5.22858 5.32250 5.38520 5.43014 5.48351 5.49971 5.52355 5.65856 5.72087 5.79714 5.86248 5.94378 5.98244 6.13585 6.28980 6.54982 7.06141 7.06988 7.11654 7.51598 7.82869 8.08185 8.52935 8.88692 9.35566 9.75308 10.75710 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.002180 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.335049 B =12842.090043 C =13816.040778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 N -0.602 5.602 4 C 0.519 3.481 5 O -0.540 6.540 6 C -0.144 4.144 7 C -0.157 4.157 8 C 0.262 3.738 9 F -0.205 7.205 10 F -0.206 7.206 11 C 0.129 3.871 12 H 0.109 0.891 13 C -0.134 4.134 14 C 0.033 3.967 15 N -0.491 5.491 16 C 0.034 3.966 17 C 0.450 3.550 18 O -0.562 6.562 19 N -0.587 5.587 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.879 5.879 24 Si 0.879 3.121 25 H -0.270 1.270 26 H -0.276 1.276 27 H -0.270 1.270 28 C 0.016 3.984 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.121 0.879 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.057 0.943 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 6.893 25.155 26.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.032 4.032 3 N -0.335 5.335 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.183 4.183 7 C -0.195 4.195 8 C 0.208 3.792 9 F -0.187 7.187 10 F -0.188 7.188 11 C 0.025 3.975 12 H 0.127 0.873 13 C -0.173 4.173 14 C -0.093 4.093 15 N -0.216 5.216 16 C -0.098 4.098 17 C 0.236 3.764 18 O -0.445 6.445 19 N -0.226 5.226 20 C -0.434 4.434 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.519 5.519 24 Si 0.706 3.294 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.112 4.112 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.139 0.861 43 H 0.066 0.934 44 H 0.109 0.891 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.031 7.583 24.363 25.696 hybrid contribution -2.205 -0.584 0.890 2.449 sum 0.826 6.999 25.254 26.219 Atomic orbital electron populations 1.22451 0.95618 1.02912 1.02850 1.21807 0.94805 0.82372 1.04172 1.48094 1.64949 1.14120 1.06318 1.20406 0.78166 0.85713 0.85019 1.90715 1.44472 1.19840 1.86655 1.21695 1.04412 0.99865 0.92368 1.22426 1.05316 1.00485 0.91290 1.21945 0.77357 0.94337 0.85547 1.92997 1.92255 1.74923 1.58491 1.92996 1.32839 1.96164 1.96765 1.21987 0.95156 0.98084 0.82248 0.87299 1.22983 0.97868 0.98938 0.97537 1.23695 0.93651 0.92203 0.99782 1.64631 1.08932 1.23365 1.24632 1.22146 0.92862 0.97677 0.97106 1.19586 0.86326 0.84459 0.86023 1.90483 1.18800 1.67574 1.67597 1.42196 1.07295 1.40375 1.32781 1.19418 0.97536 1.17999 1.08435 0.86218 1.25049 0.98433 0.96458 0.96197 1.69615 1.33759 1.26750 1.21758 0.86680 0.85101 0.78908 0.78728 1.19544 1.20151 1.19576 1.23505 0.97034 1.00556 0.90148 0.92202 0.91620 0.91012 0.88773 0.90392 0.88184 0.87715 0.87861 0.88559 0.87149 0.89530 0.90794 0.94327 0.86087 0.93410 0.89087 0.79702 0.91552 0.92486 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.73 37.16 0.36 -0.96 16 2 C 0.09 0.69 5.27 -4.04 -0.02 0.67 16 3 N -0.60 -5.63 2.37 -164.57 -0.39 -6.02 16 4 C 0.52 5.04 7.63 -10.98 -0.08 4.96 16 5 O -0.54 -7.19 15.35 5.55 0.09 -7.11 16 6 C -0.14 -0.85 4.28 -27.88 -0.12 -0.97 16 7 C -0.16 -1.00 4.73 -26.73 -0.13 -1.12 16 8 C 0.26 1.51 5.29 37.16 0.20 1.70 16 9 F -0.21 -1.69 17.34 2.25 0.04 -1.65 16 10 F -0.21 -1.62 17.02 2.25 0.04 -1.58 16 11 C 0.13 1.44 3.43 -66.58 -0.23 1.22 16 12 H 0.11 1.35 6.98 -51.93 -0.36 0.98 16 13 C -0.13 -1.57 6.13 -24.73 -0.15 -1.72 16 14 C 0.03 0.49 4.93 -1.76 -0.01 0.49 16 15 N -0.49 -7.43 5.26 -231.72 -1.22 -8.65 16 16 C 0.03 0.54 5.52 -4.97 -0.03 0.51 16 17 C 0.45 9.68 7.49 -10.99 -0.08 9.60 16 18 O -0.56 -14.05 13.09 5.54 0.07 -13.98 16 19 N -0.59 -13.42 5.09 -10.96 -0.06 -13.48 16 20 C -0.31 -8.34 10.16 -14.93 -0.15 -8.49 16 21 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.08 13.96 55.50 0.77 -24.31 16 24 Si 0.88 18.81 27.74 -169.99 -4.71 14.10 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 28 C 0.02 0.20 6.25 -2.76 -0.02 0.18 16 29 H 0.06 0.39 6.34 -51.93 -0.33 0.06 16 30 H 0.07 0.59 5.01 -51.93 -0.26 0.33 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.84 4.50 -51.93 -0.23 0.61 16 33 H 0.08 0.40 6.71 -51.93 -0.35 0.05 16 34 H 0.10 0.35 7.29 -51.93 -0.38 -0.03 16 35 H 0.10 0.56 6.17 -51.93 -0.32 0.24 16 36 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.10 0.77 8.10 -51.93 -0.42 0.34 16 38 H 0.11 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 41 H 0.04 0.55 5.85 -51.93 -0.30 0.25 16 42 H 0.12 2.24 5.96 -51.93 -0.31 1.93 16 43 H 0.05 0.66 7.18 -51.93 -0.37 0.29 16 44 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.06 0.64 4.20 -51.93 -0.22 0.42 16 48 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -33.28 376.55 -6.83 -40.12 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.58 Total: 9.79 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.56 Total: 7.08 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.89 Total: -52.45 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.16 Total: -21.08 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.71 Total: 14.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.28 -6.83 -40.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714045708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.163 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds