Wall clock time and date at job start Wed Apr 1 2020 04:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47058 * 2 1 4 4 C 1.34783 * 119.99828 * 84.52522 * 3 2 1 5 5 O 1.21283 * 119.99746 * 175.31720 * 4 3 2 6 6 C 1.50698 * 120.00120 * 355.31613 * 4 3 2 7 7 C 1.52999 * 109.47285 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47312 * 180.02562 * 7 6 4 9 9 F 1.39897 * 109.47299 * 174.99724 * 8 7 6 10 10 F 1.39900 * 109.46723 * 294.99781 * 8 7 6 11 11 C 1.46501 * 120.00368 * 264.52293 * 3 2 1 12 12 H 1.08999 * 110.27789 * 186.38362 * 11 3 2 13 13 C 1.54590 * 110.30910 * 308.47407 * 11 3 2 14 14 C 1.55194 * 102.80246 * 96.97921 * 13 11 3 15 15 N 1.48527 * 103.23762 * 37.43513 * 14 13 11 16 16 C 1.46901 * 111.00239 * 200.25825 * 15 14 13 17 17 C 1.50706 * 109.47114 * 307.39769 * 16 15 14 18 18 O 1.21300 * 119.99687 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00508 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00252 * 179.97438 * 19 17 16 21 21 H 1.07990 * 120.00060 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99937 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99957 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99795 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47172 * 90.00199 * 24 22 20 26 26 H 1.48504 * 109.46833 * 210.00111 * 24 22 20 27 27 H 1.48499 * 109.47319 * 329.99875 * 24 22 20 28 28 C 1.47900 * 105.81915 * 320.76887 * 15 14 13 29 29 H 1.08999 * 109.47118 * 304.46671 * 1 2 3 30 30 H 1.09007 * 109.47102 * 64.46879 * 1 2 3 31 31 H 1.09001 * 109.47317 * 184.46146 * 1 2 3 32 32 H 1.09005 * 109.47464 * 240.00363 * 2 1 3 33 33 H 1.09000 * 109.47040 * 120.00036 * 2 1 3 34 34 H 1.08999 * 109.47264 * 59.99856 * 6 4 3 35 35 H 1.09001 * 109.46790 * 300.00168 * 6 4 3 36 36 H 1.09003 * 109.46566 * 299.99562 * 7 6 4 37 37 H 1.08999 * 109.47356 * 59.99584 * 7 6 4 38 38 H 1.09003 * 109.47116 * 54.99010 * 8 7 6 39 39 H 1.08999 * 110.72869 * 215.31724 * 13 11 3 40 40 H 1.09000 * 110.72533 * 338.60099 * 13 11 3 41 41 H 1.09004 * 110.68327 * 278.98602 * 14 13 11 42 42 H 1.08999 * 110.78717 * 155.93330 * 14 13 11 43 43 H 1.09004 * 109.47486 * 67.38966 * 16 15 14 44 44 H 1.08991 * 109.47484 * 187.39370 * 16 15 14 45 45 H 0.97000 * 119.99666 * 359.97438 * 19 17 16 46 46 H 0.96993 * 120.00052 * 179.97438 * 23 22 20 47 47 H 1.08997 * 109.91853 * 265.97749 * 28 15 14 48 48 H 1.09009 * 110.08171 * 144.77525 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1379 2.0536 1.1619 5 8 2.6215 3.1659 1.1719 6 6 1.6708 1.4236 2.4487 7 6 1.9181 2.3898 3.6089 8 6 1.4445 1.7499 4.9154 9 9 1.7737 2.5838 5.9894 10 9 0.0575 1.5718 4.8714 11 6 2.3767 2.0315 -1.2629 12 1 2.8233 3.0073 -1.0719 13 6 3.3534 1.1423 -2.0661 14 6 2.4120 0.4018 -3.0530 15 7 1.4098 1.4385 -3.4097 16 6 0.1847 0.8259 -3.9404 17 6 0.5390 -0.1143 -5.0636 18 8 1.6982 -0.2594 -5.3902 19 7 -0.4319 -0.7940 -5.7053 20 6 -0.1096 -1.6489 -6.7274 21 1 0.9223 -1.7774 -7.0187 22 6 -1.1108 -2.3492 -7.3893 23 7 -0.8018 -3.1682 -8.3693 24 14 -2.8958 -2.1263 -6.8858 25 1 -3.4965 -1.0175 -7.6700 26 1 -3.6447 -3.3813 -7.1491 27 1 -2.9651 -1.8030 -5.4381 28 6 1.1335 2.1791 -2.1596 29 1 -0.3633 0.5816 0.8473 30 1 -0.3634 0.4430 -0.9274 31 1 -0.3634 -1.0245 0.0799 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.2218 0.4991 2.6216 35 1 0.6053 1.2041 2.3799 36 1 2.9835 2.6096 3.6778 37 1 1.3669 3.3141 3.4359 38 1 1.9310 0.7830 5.0437 39 1 4.0761 1.7536 -2.6065 40 1 3.8596 0.4346 -1.4095 41 1 1.9314 -0.4457 -2.5642 42 1 2.9587 0.0748 -3.9375 43 1 -0.3174 0.2715 -3.1474 44 1 -0.4787 1.6055 -4.3147 45 1 -1.3588 -0.6782 -5.4439 46 1 -1.5006 -3.6574 -8.8311 47 1 0.2630 1.7534 -1.6606 48 1 0.9572 3.2321 -2.3796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714045708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:21 Heat of formation + Delta-G solvation = -180.081562 kcal Electronic energy + Delta-G solvation = -31492.040907 eV Core-core repulsion = 26831.155674 eV Total energy + Delta-G solvation = -4660.885232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -49.86549 -47.89717 -41.71345 -40.52982 -39.14928 -36.60484 -35.89917 -34.85754 -33.79225 -32.95629 -31.20057 -29.75696 -28.66924 -27.57882 -25.77184 -24.38556 -23.43869 -22.44834 -21.79327 -21.31497 -20.30624 -19.86096 -18.70455 -18.51765 -18.17600 -17.74136 -17.40123 -16.91850 -16.72106 -16.65339 -16.29701 -16.10895 -15.66975 -15.22565 -15.08235 -14.87247 -14.69504 -14.61018 -14.51260 -14.34810 -14.25228 -14.07780 -13.75140 -13.50524 -13.36223 -13.31584 -13.11379 -12.98772 -12.80353 -12.58776 -12.48448 -12.41926 -12.32163 -12.17271 -11.97495 -11.87112 -11.77471 -11.61018 -11.45966 -10.81791 -10.28313 -10.22287 -9.82950 -9.23667 -8.40664 -6.01236 1.29927 1.35922 1.44388 1.55310 1.83725 1.93920 2.23100 2.68012 2.90808 3.14954 3.22563 3.34405 3.51206 3.53651 3.65814 3.70165 3.83801 3.96892 4.06074 4.14414 4.16227 4.23036 4.28993 4.32291 4.33784 4.38935 4.49611 4.53876 4.58410 4.68562 4.81076 4.85051 4.88511 4.95342 5.02155 5.04228 5.17439 5.28489 5.37678 5.48148 5.53716 5.87897 5.93352 6.06016 6.36480 6.59454 6.89125 7.10948 7.39403 7.96208 8.76660 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.002180 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.335049 B =12842.090043 C =13816.040778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.087 3.913 3 N -0.599 5.599 4 C 0.515 3.485 5 O -0.583 6.583 6 C -0.135 4.135 7 C -0.154 4.154 8 C 0.260 3.740 9 F -0.222 7.222 10 F -0.218 7.218 11 C 0.136 3.864 12 H 0.096 0.904 13 C -0.122 4.122 14 C 0.038 3.962 15 N -0.512 5.512 16 C 0.045 3.955 17 C 0.451 3.549 18 O -0.603 6.603 19 N -0.590 5.590 20 C -0.324 4.324 21 H 0.057 0.943 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.260 1.260 26 H -0.276 1.276 27 H -0.230 1.230 28 C 0.023 3.977 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.154 0.846 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.389 0.611 46 H 0.279 0.721 47 H 0.074 0.926 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.572 6.905 28.486 29.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.034 4.034 3 N -0.331 5.331 4 C 0.305 3.695 5 O -0.463 6.463 6 C -0.175 4.175 7 C -0.192 4.192 8 C 0.207 3.793 9 F -0.204 7.204 10 F -0.200 7.200 11 C 0.031 3.969 12 H 0.115 0.885 13 C -0.161 4.161 14 C -0.089 4.089 15 N -0.237 5.237 16 C -0.086 4.086 17 C 0.239 3.761 18 O -0.487 6.487 19 N -0.231 5.231 20 C -0.453 4.453 21 H 0.075 0.925 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.783 3.217 25 H -0.185 1.185 26 H -0.201 1.201 27 H -0.153 1.153 28 C -0.105 4.105 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.224 0.776 46 H 0.088 0.912 47 H 0.092 0.908 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.562 7.599 27.725 28.753 hybrid contribution -1.261 -0.564 -0.179 1.393 sum -0.699 7.035 27.546 28.439 Atomic orbital electron populations 1.22434 0.95068 1.03725 1.02416 1.21986 0.95235 0.81135 1.05085 1.48129 1.64650 1.14823 1.05509 1.21073 0.77209 0.85174 0.86000 1.90705 1.46439 1.21851 1.87269 1.21729 1.05511 1.00564 0.89647 1.22357 1.04832 0.99909 0.92117 1.22319 0.76820 0.95693 0.84446 1.92964 1.92343 1.75771 1.59313 1.92972 1.34033 1.96210 1.96754 1.21737 0.94538 0.97530 0.83098 0.88541 1.22862 0.97348 0.98882 0.97032 1.23465 0.93992 0.92874 0.98585 1.64579 1.08802 1.23600 1.26755 1.22083 0.93694 0.97213 0.95599 1.20745 0.85427 0.83762 0.86213 1.90504 1.20811 1.68538 1.68835 1.42016 1.08565 1.40305 1.32230 1.18973 0.95296 1.20285 1.10791 0.92492 1.26098 1.04515 0.95257 0.95544 1.69798 1.36057 1.28119 1.23437 0.85396 0.76579 0.79032 0.80713 1.18471 1.20082 1.15277 1.23486 0.97939 1.00203 0.88897 0.91098 0.93258 0.89835 0.90214 0.87137 0.84663 0.86397 0.88106 0.90861 0.82861 0.90293 0.89245 0.93641 0.90604 0.90168 0.86700 0.77590 0.91191 0.90843 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.73 71.98 0.70 -1.18 16 2 C 0.09 1.00 5.27 86.38 0.46 1.45 16 3 N -0.60 -9.62 2.37 -792.96 -1.88 -11.50 16 4 C 0.52 8.76 7.63 87.66 0.67 9.43 16 5 O -0.58 -14.98 15.35 -3.04 -0.05 -15.03 16 6 C -0.14 -1.10 4.28 29.85 0.13 -0.98 16 7 C -0.15 -1.62 4.73 30.59 0.14 -1.47 16 8 C 0.26 2.25 5.29 71.98 0.38 2.63 16 9 F -0.22 -3.30 17.34 44.97 0.78 -2.52 16 10 F -0.22 -2.84 17.02 44.97 0.77 -2.07 16 11 C 0.14 2.85 3.43 45.87 0.16 3.00 16 12 H 0.10 2.33 6.98 -2.39 -0.02 2.31 16 13 C -0.12 -2.79 6.13 31.89 0.20 -2.59 16 14 C 0.04 1.12 4.93 86.74 0.43 1.55 16 15 N -0.51 -14.93 5.26 -887.03 -4.67 -19.60 16 16 C 0.05 1.34 5.52 85.56 0.47 1.81 16 17 C 0.45 19.42 7.49 87.66 0.66 20.08 16 18 O -0.60 -31.57 13.09 -3.09 -0.04 -31.61 16 19 N -0.59 -26.73 5.09 -306.98 -1.56 -28.29 16 20 C -0.32 -18.43 10.16 84.04 0.85 -17.57 16 21 H 0.06 3.87 7.39 -2.92 -0.02 3.85 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 23 N -0.93 -55.26 13.96 21.66 0.30 -54.95 16 24 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 27 H -0.23 -7.41 6.52 99.48 0.65 -6.76 16 28 C 0.02 0.50 6.25 86.45 0.54 1.04 16 29 H 0.07 0.60 6.34 -2.39 -0.02 0.59 16 30 H 0.05 0.69 5.01 -2.38 -0.01 0.67 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.19 4.50 -2.38 -0.01 1.18 16 33 H 0.11 0.57 6.71 -2.39 -0.02 0.55 16 34 H 0.14 0.19 7.29 -2.39 -0.02 0.17 16 35 H 0.12 0.73 6.17 -2.39 -0.01 0.71 16 36 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 1.74 7.71 -2.39 -0.02 1.72 16 41 H 0.05 1.26 5.85 -2.39 -0.01 1.25 16 42 H 0.08 2.97 5.96 -2.39 -0.01 2.96 16 43 H 0.08 1.90 7.18 -2.39 -0.02 1.89 16 44 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.39 14.55 5.76 -92.71 -0.53 14.02 16 46 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.07 1.40 4.20 -2.39 -0.01 1.39 16 48 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -80.10 376.55 2.23 -77.87 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.42 Total: 31.28 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 6.25 Total: 16.84 kcal Atomic # 7 Polarization: -106.53 SS G_CDS: -7.80 Total: -114.34 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.09 Total: -46.63 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 1.54 Total: -4.59 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -80.10 2.23 -77.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714045708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.211 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds