Wall clock time and date at job start Wed Apr 1 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00058 * 2 1 4 4 C 1.50706 * 109.46924 * 293.95252 * 3 2 1 5 5 O 1.21291 * 119.99931 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00111 * 180.02562 * 4 3 2 7 7 C 1.37093 * 120.00054 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00330 * 359.72825 * 7 6 4 9 9 C 1.38953 * 120.00092 * 179.72074 * 7 6 4 10 10 N 1.31411 * 120.00098 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99896 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47441 * 89.99718 * 11 9 7 13 13 H 1.48495 * 109.47228 * 209.99721 * 11 9 7 14 14 H 1.48504 * 109.47291 * 329.99788 * 11 9 7 15 15 C 1.46905 * 110.99889 * 123.94945 * 2 1 3 16 16 H 1.09005 * 109.49645 * 186.04801 * 15 2 1 17 17 C 1.53042 * 109.49628 * 65.98473 * 15 2 1 18 18 C 1.53034 * 109.53550 * 178.71498 * 17 15 2 19 19 C 1.53192 * 109.34177 * 61.31604 * 18 17 15 20 20 N 1.46918 * 108.77397 * 305.37825 * 19 18 17 21 21 C 1.34786 * 120.63050 * 233.62796 * 20 19 18 22 22 O 1.21481 * 119.99633 * 172.54034 * 21 20 19 23 23 C 1.48455 * 119.99797 * 352.53943 * 21 20 19 24 24 C 1.39529 * 120.54670 * 171.13519 * 23 21 20 25 25 C 1.38760 * 118.26399 * 179.97438 * 24 23 21 26 26 N 1.32204 * 119.14815 * 0.02562 * 25 24 23 27 27 C 1.31881 * 121.03264 * 359.97438 * 26 25 24 28 28 N 1.31578 * 121.91963 * 359.73908 * 27 26 25 29 29 C 1.46925 * 118.74332 * 53.60901 * 20 19 18 30 30 H 1.09002 * 109.46834 * 60.00363 * 1 2 3 31 31 H 1.08997 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47038 * 300.00449 * 1 2 3 33 33 H 1.09001 * 109.47477 * 173.95281 * 3 2 1 34 34 H 1.08997 * 109.47554 * 53.94891 * 3 2 1 35 35 H 0.97005 * 119.99980 * 359.72716 * 6 4 3 36 36 H 0.97003 * 120.00035 * 180.02562 * 10 9 7 37 37 H 1.08994 * 109.45844 * 298.69943 * 17 15 2 38 38 H 1.08996 * 109.45733 * 58.66095 * 17 15 2 39 39 H 1.09001 * 109.47814 * 301.35753 * 18 17 15 40 40 H 1.09011 * 109.52094 * 181.30013 * 18 17 15 41 41 H 1.09000 * 109.58961 * 185.59139 * 19 18 17 42 42 H 1.09002 * 109.70336 * 65.23802 * 19 18 17 43 43 H 1.08004 * 120.87126 * 0.02562 * 24 23 21 44 44 H 1.08006 * 120.42989 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.04070 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.58895 * 186.60619 * 29 20 19 47 47 H 1.09007 * 109.58623 * 66.17339 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0054 1.4452 -2.1412 6 7 2.0188 3.3198 -1.5239 7 6 1.6932 3.9342 -2.7053 8 1 1.1343 3.3970 -3.4573 9 6 2.0819 5.2483 -2.9353 10 7 1.7702 5.8371 -4.0680 11 14 3.0489 6.1774 -1.6349 12 1 4.5027 5.9702 -1.8567 13 1 2.7359 7.6261 -1.7261 14 1 2.6772 5.6744 -0.2880 15 6 1.9954 -0.7659 1.1377 16 1 3.0797 -0.6613 1.1761 17 6 1.6303 -2.2429 0.9719 18 6 2.2057 -3.0466 2.1402 19 6 1.5968 -2.5416 3.4520 20 7 1.8186 -1.0925 3.5494 21 6 2.4097 -0.5598 4.6372 22 8 2.7104 0.6171 4.6500 23 6 2.6933 -1.4114 5.8197 24 6 3.4655 -0.9249 6.8752 25 6 3.7006 -1.7612 7.9573 26 7 3.1899 -2.9805 7.9516 27 6 2.4641 -3.4090 6.9373 28 7 2.2108 -2.6494 5.8932 29 6 1.3841 -0.2351 2.4382 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0797 1.3444 0.1083 34 1 1.5611 1.9274 0.8308 35 1 2.5211 3.8022 -0.8486 36 1 2.0419 6.7544 -4.2286 37 1 0.5457 -2.3494 0.9578 38 1 2.0439 -2.6161 0.0350 39 1 3.2881 -2.9211 2.1694 40 1 1.9652 -4.1018 2.0098 41 1 2.0757 -3.0419 4.2937 42 1 0.5268 -2.7492 3.4644 43 1 3.8689 0.0766 6.8510 44 1 4.2939 -1.4206 8.7930 45 1 2.0628 -4.4113 6.9661 46 1 1.7229 0.7865 2.6109 47 1 0.2967 -0.2543 2.3653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714447352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:25 Heat of formation + Delta-G solvation = 24.763132 kcal Electronic energy + Delta-G solvation = -30593.071323 eV Core-core repulsion = 26391.758010 eV Total energy + Delta-G solvation = -4201.313313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.90240 -40.34873 -38.93860 -37.87283 -35.96056 -34.49497 -33.86253 -32.67752 -32.64908 -31.64733 -30.09834 -28.03857 -26.91846 -25.52678 -25.04165 -24.69073 -23.97507 -22.16289 -21.14164 -19.53926 -19.30249 -18.47648 -18.19863 -17.87747 -16.64010 -16.39349 -16.12102 -15.91414 -15.75789 -15.22743 -15.15293 -14.93687 -14.67426 -14.64454 -14.23792 -14.14214 -13.92155 -13.38170 -13.28180 -13.09956 -12.97382 -12.80812 -12.37801 -12.05035 -11.72634 -11.58098 -11.48966 -11.46888 -11.34150 -11.08096 -10.91360 -10.87446 -10.74813 -10.57985 -10.55964 -10.34653 -9.95074 -9.51426 -9.40432 -9.13942 -8.52156 -8.15250 -7.87008 -6.28738 -3.79849 -0.07326 0.28751 2.28987 2.41792 3.06231 3.10274 3.17899 3.20484 3.32160 3.53259 3.76027 3.82166 3.92474 4.13162 4.21617 4.42893 4.62965 4.65915 4.79757 4.83429 4.89688 4.95192 4.99925 5.07671 5.22406 5.33751 5.36718 5.43143 5.53420 5.59753 5.62832 5.71646 5.77403 5.84143 5.87889 5.92286 5.97428 6.09388 6.13699 6.19082 6.26441 6.52236 6.96820 7.14997 7.27913 7.31220 7.60942 7.66398 8.17127 8.62890 8.97827 9.45307 9.86351 10.84317 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.002378 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.724814 B =11773.378325 C =13185.147428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.504 5.504 3 C 0.039 3.961 4 C 0.454 3.546 5 O -0.559 6.559 6 N -0.591 5.591 7 C -0.303 4.303 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.882 5.882 11 Si 0.878 3.122 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.269 1.269 15 C 0.074 3.926 16 H 0.084 0.916 17 C -0.112 4.112 18 C -0.134 4.134 19 C 0.070 3.930 20 N -0.580 5.580 21 C 0.564 3.436 22 O -0.524 6.524 23 C 0.138 3.862 24 C -0.168 4.168 25 C 0.154 3.846 26 N -0.507 5.507 27 C 0.289 3.711 28 N -0.488 5.488 29 C 0.072 3.928 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.019 0.981 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.370 0.630 36 H 0.273 0.727 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.067 0.933 43 H 0.162 0.838 44 H 0.179 0.821 45 H 0.204 0.796 46 H 0.093 0.907 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -19.292 25.613 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.227 5.227 3 C -0.093 4.093 4 C 0.240 3.760 5 O -0.441 6.441 6 N -0.231 5.231 7 C -0.432 4.432 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.705 3.295 12 H -0.196 1.196 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.036 4.036 16 H 0.103 0.897 17 C -0.150 4.150 18 C -0.172 4.172 19 C -0.052 4.052 20 N -0.311 5.311 21 C 0.349 3.651 22 O -0.400 6.400 23 C -0.009 4.009 24 C -0.191 4.191 25 C -0.013 4.013 26 N -0.221 5.221 27 C 0.002 3.998 28 N -0.205 5.205 29 C -0.052 4.052 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.203 0.797 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.161 0.839 42 H 0.086 0.914 43 H 0.180 0.820 44 H 0.196 0.804 45 H 0.221 0.779 46 H 0.112 0.888 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.596 -19.981 24.430 31.667 hybrid contribution 0.788 2.167 1.595 2.804 sum 3.383 -17.814 26.025 31.718 Atomic orbital electron populations 1.22668 0.86745 1.01849 1.02174 1.61874 1.08920 1.12671 1.39190 1.21967 1.00940 0.89313 0.97033 1.19597 0.85047 0.82472 0.88886 1.90519 1.42679 1.64133 1.46782 1.42218 1.51146 1.11946 1.17772 1.19417 1.33977 0.96150 0.93639 0.86260 1.25033 0.97895 0.96502 0.96751 1.69622 1.45780 1.13546 1.23247 0.86688 0.80916 0.80477 0.81438 1.19593 1.20205 1.19461 1.22131 0.99940 0.94428 0.87133 0.89750 1.21594 1.01366 0.93287 0.98767 1.21959 1.00774 0.99965 0.94546 1.23043 1.02141 0.78999 1.01037 1.47925 1.57276 1.09054 1.16881 1.17856 0.78629 0.86452 0.82156 1.90825 1.52005 1.15667 1.81458 1.21696 0.93334 0.91010 0.94899 1.23026 0.98450 1.03467 0.94176 1.23432 0.93029 0.88230 0.96595 1.68388 1.09428 1.16231 1.28049 1.25224 0.90660 1.00047 0.83857 1.68400 1.22024 1.04855 1.25203 1.22651 1.00226 0.96000 0.86312 0.88312 0.91705 0.96294 0.89230 0.93164 0.79700 0.91651 0.91458 0.90393 0.91796 0.90299 0.83926 0.91434 0.81990 0.80433 0.77910 0.88835 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 8.33 60.06 0.50 0.70 16 2 N -0.50 -7.97 4.45 -236.18 -1.05 -9.02 16 3 C 0.04 0.67 5.03 -4.97 -0.03 0.65 16 4 C 0.45 10.42 7.51 -10.98 -0.08 10.33 16 5 O -0.56 -14.85 13.89 5.55 0.08 -14.77 16 6 N -0.59 -14.33 5.09 -10.96 -0.06 -14.38 16 7 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 10 N -0.88 -26.00 13.96 55.50 0.77 -25.22 16 11 Si 0.88 19.78 27.74 -169.99 -4.71 15.07 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 15 C 0.07 0.91 2.34 -67.59 -0.16 0.76 16 16 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 17 C -0.11 -1.15 5.07 -26.69 -0.14 -1.29 16 18 C -0.13 -1.07 6.08 -26.61 -0.16 -1.23 16 19 C 0.07 0.58 5.93 -3.72 -0.02 0.56 16 20 N -0.58 -6.26 2.97 -173.65 -0.52 -6.78 16 21 C 0.56 6.62 7.67 -12.05 -0.09 6.53 16 22 O -0.52 -7.69 15.89 5.38 0.09 -7.60 16 23 C 0.14 1.25 6.61 -82.64 -0.55 0.71 16 24 C -0.17 -1.20 9.72 -38.91 -0.38 -1.58 16 25 C 0.15 0.85 11.31 -17.20 -0.19 0.65 16 26 N -0.51 -3.38 10.42 -14.59 -0.15 -3.53 16 27 C 0.29 1.71 12.27 -92.26 -1.13 0.58 16 28 N -0.49 -3.69 6.31 -11.14 -0.07 -3.76 16 29 C 0.07 0.86 5.02 -3.71 -0.02 0.85 16 30 H 0.10 1.88 5.88 -51.93 -0.31 1.58 16 31 H 0.06 0.85 6.32 -51.93 -0.33 0.52 16 32 H 0.02 0.26 6.34 -51.93 -0.33 -0.07 16 33 H 0.09 1.40 7.93 -51.93 -0.41 0.99 16 34 H 0.05 0.80 7.20 -51.93 -0.37 0.43 16 35 H 0.37 7.99 5.76 -40.82 -0.24 7.75 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.07 0.68 6.53 -51.93 -0.34 0.34 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 41 H 0.14 1.09 4.01 -81.90 -0.33 0.76 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.16 1.04 7.76 -52.48 -0.41 0.63 16 44 H 0.18 0.38 8.06 -52.48 -0.42 -0.05 16 45 H 0.20 0.50 8.06 -52.48 -0.42 0.08 16 46 H 0.09 1.29 6.05 -51.93 -0.31 0.97 16 47 H 0.08 0.92 6.13 -51.93 -0.32 0.60 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -35.11 372.22 -8.90 -44.02 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.20 Total: 9.92 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -2.69 Total: 10.45 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -1.07 Total: -62.69 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.16 Total: -22.37 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.71 Total: 15.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.11 -8.90 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714447352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.780 kcal (2) G-P(sol) polarization free energy of solvation -35.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds