Wall clock time and date at job start Wed Apr 1 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00058 * 2 1 4 4 C 1.50706 * 109.46924 * 293.95252 * 3 2 1 5 5 O 1.21291 * 119.99931 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00111 * 180.02562 * 4 3 2 7 7 C 1.37093 * 120.00054 * 179.97438 * 6 4 3 8 8 H 1.08000 * 120.00330 * 359.72825 * 7 6 4 9 9 C 1.38953 * 120.00092 * 179.72074 * 7 6 4 10 10 N 1.31411 * 120.00098 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 119.99896 * 0.02562 * 9 7 6 12 12 H 1.48508 * 109.47441 * 89.99718 * 11 9 7 13 13 H 1.48495 * 109.47228 * 209.99721 * 11 9 7 14 14 H 1.48504 * 109.47291 * 329.99788 * 11 9 7 15 15 C 1.46905 * 110.99889 * 123.94945 * 2 1 3 16 16 H 1.09005 * 109.49645 * 186.04801 * 15 2 1 17 17 C 1.53042 * 109.49628 * 65.98473 * 15 2 1 18 18 C 1.53034 * 109.53550 * 178.71498 * 17 15 2 19 19 C 1.53192 * 109.34177 * 61.31604 * 18 17 15 20 20 N 1.46918 * 108.77397 * 305.37825 * 19 18 17 21 21 C 1.34786 * 120.63050 * 233.62796 * 20 19 18 22 22 O 1.21481 * 119.99633 * 172.54034 * 21 20 19 23 23 C 1.48455 * 119.99797 * 352.53943 * 21 20 19 24 24 C 1.39529 * 120.54670 * 171.13519 * 23 21 20 25 25 C 1.38760 * 118.26399 * 179.97438 * 24 23 21 26 26 N 1.32204 * 119.14815 * 0.02562 * 25 24 23 27 27 C 1.31881 * 121.03264 * 359.97438 * 26 25 24 28 28 N 1.31578 * 121.91963 * 359.73908 * 27 26 25 29 29 C 1.46925 * 118.74332 * 53.60901 * 20 19 18 30 30 H 1.09002 * 109.46834 * 60.00363 * 1 2 3 31 31 H 1.08997 * 109.47008 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47038 * 300.00449 * 1 2 3 33 33 H 1.09001 * 109.47477 * 173.95281 * 3 2 1 34 34 H 1.08997 * 109.47554 * 53.94891 * 3 2 1 35 35 H 0.97005 * 119.99980 * 359.72716 * 6 4 3 36 36 H 0.97003 * 120.00035 * 180.02562 * 10 9 7 37 37 H 1.08994 * 109.45844 * 298.69943 * 17 15 2 38 38 H 1.08996 * 109.45733 * 58.66095 * 17 15 2 39 39 H 1.09001 * 109.47814 * 301.35753 * 18 17 15 40 40 H 1.09011 * 109.52094 * 181.30013 * 18 17 15 41 41 H 1.09000 * 109.58961 * 185.59139 * 19 18 17 42 42 H 1.09002 * 109.70336 * 65.23802 * 19 18 17 43 43 H 1.08004 * 120.87126 * 0.02562 * 24 23 21 44 44 H 1.08006 * 120.42989 * 179.97438 * 25 24 23 45 45 H 1.08004 * 119.04070 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.58895 * 186.60619 * 29 20 19 47 47 H 1.09007 * 109.58623 * 66.17339 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 8 1.0054 1.4452 -2.1412 6 7 2.0188 3.3198 -1.5239 7 6 1.6932 3.9342 -2.7053 8 1 1.1343 3.3970 -3.4573 9 6 2.0819 5.2483 -2.9353 10 7 1.7702 5.8371 -4.0680 11 14 3.0489 6.1774 -1.6349 12 1 4.5027 5.9702 -1.8567 13 1 2.7359 7.6261 -1.7261 14 1 2.6772 5.6744 -0.2880 15 6 1.9954 -0.7659 1.1377 16 1 3.0797 -0.6613 1.1761 17 6 1.6303 -2.2429 0.9719 18 6 2.2057 -3.0466 2.1402 19 6 1.5968 -2.5416 3.4520 20 7 1.8186 -1.0925 3.5494 21 6 2.4097 -0.5598 4.6372 22 8 2.7104 0.6171 4.6500 23 6 2.6933 -1.4114 5.8197 24 6 3.4655 -0.9249 6.8752 25 6 3.7006 -1.7612 7.9573 26 7 3.1899 -2.9805 7.9516 27 6 2.4641 -3.4090 6.9373 28 7 2.2108 -2.6494 5.8932 29 6 1.3841 -0.2351 2.4382 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.0797 1.3444 0.1083 34 1 1.5611 1.9274 0.8308 35 1 2.5211 3.8022 -0.8486 36 1 2.0419 6.7544 -4.2286 37 1 0.5457 -2.3494 0.9578 38 1 2.0439 -2.6161 0.0350 39 1 3.2881 -2.9211 2.1694 40 1 1.9652 -4.1018 2.0098 41 1 2.0757 -3.0419 4.2937 42 1 0.5268 -2.7492 3.4644 43 1 3.8689 0.0766 6.8510 44 1 4.2939 -1.4206 8.7930 45 1 2.0628 -4.4113 6.9661 46 1 1.7229 0.7865 2.6109 47 1 0.2967 -0.2543 2.3653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714447352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:24 Heat of formation + Delta-G solvation = -1.510091 kcal Electronic energy + Delta-G solvation = -30594.210616 eV Core-core repulsion = 26391.758010 eV Total energy + Delta-G solvation = -4202.452606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.47992 -41.24187 -40.39297 -39.16505 -37.05759 -35.93296 -35.02402 -33.77391 -33.46993 -33.17539 -31.12483 -29.46432 -27.68093 -27.04253 -25.68274 -25.52325 -25.18900 -23.12623 -21.95148 -21.25852 -20.45023 -20.14822 -19.12899 -18.48463 -17.90507 -17.24157 -16.93594 -16.91078 -16.78397 -16.45982 -16.41748 -16.12374 -15.70722 -15.53344 -15.26326 -15.17099 -14.96200 -14.71800 -14.48181 -14.40246 -14.22591 -14.01563 -13.81410 -13.39489 -13.11846 -12.70031 -12.65491 -12.42990 -12.37539 -12.34101 -12.00821 -11.98989 -11.81753 -11.63637 -11.53553 -11.48156 -11.45832 -10.85170 -10.41356 -10.24857 -10.01589 -9.95845 -9.10552 -8.42580 -6.02675 -0.66100 -0.14069 1.28814 1.32859 1.41488 1.53933 1.63865 1.92909 2.20675 2.54824 2.67373 2.75475 3.12246 3.17565 3.19863 3.32788 3.67202 3.71798 3.79163 3.99208 4.00962 4.10405 4.16279 4.18255 4.26313 4.37608 4.45173 4.48102 4.52077 4.58652 4.61356 4.64523 4.82309 4.86421 4.99983 5.08377 5.15862 5.23444 5.28553 5.39851 5.51646 5.59178 5.68039 5.86713 5.96810 6.12918 6.19379 6.58121 6.75569 6.86999 6.91481 7.38085 7.94559 8.74855 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016765 B = 0.002378 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.724814 B =11773.378325 C =13185.147428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.522 5.522 3 C 0.051 3.949 4 C 0.455 3.545 5 O -0.600 6.600 6 N -0.594 5.594 7 C -0.325 4.325 8 H 0.059 0.941 9 C -0.014 4.014 10 N -0.932 5.932 11 Si 0.961 3.039 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.237 1.237 15 C 0.080 3.920 16 H 0.081 0.919 17 C -0.109 4.109 18 C -0.125 4.125 19 C 0.069 3.931 20 N -0.579 5.579 21 C 0.559 3.441 22 O -0.563 6.563 23 C 0.118 3.882 24 C -0.172 4.172 25 C 0.165 3.835 26 N -0.518 5.518 27 C 0.290 3.710 28 N -0.493 5.493 29 C 0.078 3.922 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.387 0.613 36 H 0.279 0.721 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.155 0.845 42 H 0.076 0.924 43 H 0.164 0.836 44 H 0.212 0.788 45 H 0.236 0.764 46 H 0.075 0.925 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 -20.864 29.728 36.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.245 5.245 3 C -0.080 4.080 4 C 0.242 3.758 5 O -0.484 6.484 6 N -0.235 5.235 7 C -0.454 4.454 8 H 0.077 0.923 9 C -0.212 4.212 10 N -0.573 5.573 11 Si 0.781 3.219 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.161 1.161 15 C -0.029 4.029 16 H 0.099 0.901 17 C -0.147 4.147 18 C -0.163 4.163 19 C -0.051 4.051 20 N -0.310 5.310 21 C 0.345 3.655 22 O -0.441 6.441 23 C -0.028 4.028 24 C -0.195 4.195 25 C -0.003 4.003 26 N -0.232 5.232 27 C 0.004 3.996 28 N -0.211 5.211 29 C -0.047 4.047 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.223 0.777 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.171 0.829 42 H 0.094 0.906 43 H 0.182 0.818 44 H 0.229 0.771 45 H 0.252 0.748 46 H 0.094 0.906 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.986 -21.609 28.559 36.034 hybrid contribution 0.282 2.505 0.289 2.537 sum 4.268 -19.104 28.848 34.863 Atomic orbital electron populations 1.22532 0.86697 1.02879 1.00674 1.61838 1.09184 1.11941 1.41517 1.21854 1.02438 0.90089 0.93645 1.20720 0.82997 0.81818 0.90249 1.90509 1.44002 1.65044 1.48869 1.42066 1.51966 1.12598 1.16907 1.18995 1.34953 0.96885 0.94538 0.92333 1.26051 0.98636 0.96977 0.99577 1.69794 1.47229 1.14327 1.25966 0.85419 0.79183 0.78330 0.78966 1.18123 1.19811 1.16064 1.22139 0.99503 0.95225 0.86055 0.90123 1.21588 1.01768 0.91840 0.99481 1.21926 1.00305 1.00907 0.93176 1.23238 1.02860 0.77461 1.01585 1.48036 1.56779 1.09918 1.16271 1.18285 0.77940 0.86351 0.82894 1.90790 1.53691 1.17356 1.82300 1.21424 0.95045 0.91723 0.94588 1.23153 0.98244 1.03917 0.94202 1.23968 0.92170 0.87449 0.96677 1.68491 1.09752 1.16677 1.28315 1.25883 0.89858 1.00860 0.83015 1.68305 1.22278 1.04353 1.26117 1.22456 1.00223 0.95410 0.86579 0.92569 0.89474 0.94840 0.86993 0.91118 0.77738 0.91142 0.90980 0.91207 0.92183 0.87807 0.82889 0.90581 0.81804 0.77127 0.74762 0.90616 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 8.33 127.69 1.06 1.66 16 2 N -0.52 -16.15 4.45 -901.14 -4.01 -20.16 16 3 C 0.05 1.72 5.03 85.56 0.43 2.15 16 4 C 0.45 21.27 7.51 87.66 0.66 21.93 16 5 O -0.60 -33.50 13.89 -3.06 -0.04 -33.54 16 6 N -0.59 -29.11 5.09 -306.98 -1.56 -30.67 16 7 C -0.32 -19.38 10.16 84.04 0.85 -18.53 16 8 H 0.06 4.13 7.39 -2.91 -0.02 4.10 16 9 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 10 N -0.93 -57.00 13.96 21.66 0.30 -56.70 16 11 Si 0.96 40.29 27.74 68.60 1.90 42.20 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 14 H -0.24 -8.64 6.52 99.48 0.65 -7.99 16 15 C 0.08 1.87 2.34 44.99 0.11 1.98 16 16 H 0.08 1.97 7.93 -2.38 -0.02 1.95 16 17 C -0.11 -2.01 5.07 30.62 0.16 -1.86 16 18 C -0.12 -1.66 6.08 30.67 0.19 -1.47 16 19 C 0.07 0.97 5.93 86.36 0.51 1.49 16 20 N -0.58 -11.61 2.97 -821.62 -2.44 -14.05 16 21 C 0.56 12.59 7.67 86.97 0.67 13.25 16 22 O -0.56 -16.36 15.89 -3.66 -0.06 -16.42 16 23 C 0.12 1.96 6.61 41.99 0.28 2.24 16 24 C -0.17 -2.15 9.72 22.71 0.22 -1.93 16 25 C 0.16 1.34 11.31 84.76 0.96 2.30 16 26 N -0.52 -5.32 10.42 -200.09 -2.09 -7.41 16 27 C 0.29 2.55 12.27 180.92 2.22 4.77 16 28 N -0.49 -6.25 6.31 -189.16 -1.19 -7.44 16 29 C 0.08 1.76 5.02 86.36 0.43 2.20 16 30 H 0.06 2.22 5.88 -2.39 -0.01 2.20 16 31 H 0.09 2.20 6.32 -2.39 -0.02 2.18 16 32 H 0.03 0.90 6.34 -2.39 -0.02 0.89 16 33 H 0.11 3.30 7.93 -2.39 -0.02 3.28 16 34 H 0.07 2.13 7.20 -2.39 -0.02 2.12 16 35 H 0.39 16.13 5.76 -92.70 -0.53 15.60 16 36 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.07 1.27 6.53 -2.39 -0.02 1.26 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.16 1.92 4.01 -61.56 -0.25 1.67 16 42 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.16 1.91 7.76 -2.91 -0.02 1.89 16 44 H 0.21 0.12 8.06 -2.91 -0.02 0.10 16 45 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 46 H 0.08 2.01 6.05 -2.39 -0.01 2.00 16 47 H 0.08 1.78 6.13 -2.38 -0.01 1.77 16 Total: -1.00 -82.45 372.22 0.22 -82.23 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.20 Total: 32.10 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 9.21 Total: 29.86 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -10.99 Total: -136.43 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.10 Total: -49.96 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 1.90 Total: 42.20 kcal Total: -82.45 0.22 -82.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714447352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.721 kcal (2) G-P(sol) polarization free energy of solvation -82.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds