Wall clock time and date at job start Wed Apr 1 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52996 * 109.47198 * 270.00278 * 3 2 1 5 5 N 1.46902 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.46902 * 110.99984 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47160 * 179.97438 * 6 5 4 8 8 O 1.21291 * 119.99802 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99962 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99888 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99715 * 359.97438 * 10 9 7 12 12 C 1.38955 * 119.99881 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99660 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99890 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47374 * 89.99671 * 14 12 10 16 16 H 1.48505 * 109.47224 * 209.99872 * 14 12 10 17 17 H 1.48505 * 109.46956 * 329.99362 * 14 12 10 18 18 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 19 19 O 1.21283 * 119.99649 * 179.97438 * 18 2 1 20 20 C 1.50697 * 119.99774 * 359.72768 * 18 2 1 21 21 C 1.53003 * 109.46624 * 180.02562 * 20 18 2 22 22 H 1.09002 * 110.43503 * 307.53023 * 21 20 18 23 23 C 1.54271 * 110.48264 * 184.99885 * 21 20 18 24 24 C 1.53874 * 106.59643 * 217.70801 * 23 21 20 25 25 C 1.54268 * 106.60040 * 0.02562 * 24 23 21 26 26 F 1.39900 * 110.49002 * 142.28955 * 25 24 23 27 27 F 1.39901 * 110.48695 * 264.79873 * 25 24 23 28 28 C 1.54886 * 104.19569 * 23.60771 * 25 24 23 29 29 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 30 30 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 31 31 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 32 32 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 33 33 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 34 34 H 1.08997 * 109.47172 * 299.99762 * 4 3 2 35 35 H 1.08998 * 109.47554 * 59.99767 * 4 3 2 36 36 H 1.00897 * 111.00300 * 56.04602 * 5 4 3 37 37 H 1.08996 * 109.46779 * 299.99597 * 6 5 4 38 38 H 1.08999 * 109.47154 * 59.99702 * 6 5 4 39 39 H 0.97001 * 119.99956 * 359.97438 * 9 7 6 40 40 H 0.97003 * 119.99278 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.46809 * 299.99238 * 20 18 2 42 42 H 1.08993 * 109.47525 * 59.99679 * 20 18 2 43 43 H 1.08999 * 110.03420 * 336.99008 * 23 21 20 44 44 H 1.09004 * 110.03469 * 98.37718 * 23 21 20 45 45 H 1.09002 * 110.02932 * 119.28567 * 24 23 21 46 46 H 1.09000 * 110.03563 * 240.66514 * 24 23 21 47 47 H 1.08997 * 110.75775 * 203.74360 * 28 25 24 48 48 H 1.08999 * 110.76090 * 80.37272 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 3.4491 3.4392 -2.8138 7 6 4.2013 4.7445 -2.7736 8 8 4.4897 5.2455 -1.7073 9 7 4.5535 5.3550 -3.9223 10 6 5.2382 6.5422 -3.8857 11 1 5.4950 6.9883 -2.9363 12 6 5.6009 7.1719 -5.0701 13 7 5.2879 6.6292 -6.2252 14 14 6.5344 8.7890 -5.0202 15 1 7.9944 8.5176 -5.0078 16 1 6.1911 9.5960 -6.2186 17 1 6.1599 9.5392 -3.7945 18 6 2.1389 -1.1673 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4723 0.0051 21 6 2.3797 -3.6352 0.0039 22 1 3.0969 -3.5219 -0.8091 23 6 1.6358 -4.9814 -0.1164 24 6 2.3870 -5.9803 0.7812 25 6 3.5607 -5.2062 1.4161 26 9 3.7579 -5.6147 2.7395 27 9 4.7292 -5.3896 0.6691 28 6 3.1095 -3.7253 1.3673 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5139 34 1 3.0415 0.9508 -1.9563 35 1 1.5001 1.8408 -1.9563 36 1 4.0439 2.9058 -0.9162 37 1 4.0453 2.6919 -3.3374 38 1 2.5034 3.5812 -3.3369 39 1 4.3231 4.9540 -4.7750 40 1 5.5414 7.0686 -7.0520 41 1 0.7625 -2.5283 0.8979 42 1 0.7550 -2.5318 -0.8821 43 1 0.6071 -4.8715 0.2268 44 1 1.6494 -5.3245 -1.1509 45 1 1.7227 -6.3552 1.5599 46 1 2.7651 -6.8090 0.1826 47 1 3.9712 -3.0581 1.3889 48 1 2.4265 -3.5023 2.1870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714719752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:40 Heat of formation + Delta-G solvation = -182.774119 kcal Electronic energy + Delta-G solvation = -29960.038930 eV Core-core repulsion = 25299.036940 eV Total energy + Delta-G solvation = -4661.001990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.16338 -47.29348 -40.43086 -38.32602 -37.94297 -36.33406 -35.00799 -33.81460 -31.96653 -31.21697 -29.81952 -29.05276 -27.14069 -26.72111 -25.36181 -23.83683 -22.21980 -21.53737 -20.82159 -19.54116 -19.11763 -17.90302 -17.86869 -17.51650 -16.92011 -16.64941 -16.42199 -16.11364 -15.65993 -15.49462 -15.22629 -14.57619 -14.47802 -14.38915 -14.05778 -13.89325 -13.77748 -13.66300 -13.62415 -13.28617 -13.23439 -13.17020 -12.86572 -12.63044 -12.26690 -12.24762 -12.11069 -12.02291 -11.80364 -11.60184 -11.49407 -11.48843 -11.12455 -11.07518 -10.97477 -10.92538 -10.38236 -10.20804 -10.02527 -9.49785 -8.99524 -8.45057 -8.07840 -7.94927 -6.40562 -3.81300 2.34396 2.63961 3.19070 3.27521 3.33659 3.34658 3.48677 3.73690 3.92048 3.92970 4.10959 4.17346 4.41983 4.46868 4.53506 4.64806 4.72579 4.76419 4.86694 4.92889 4.96805 5.03388 5.08450 5.11060 5.19894 5.21638 5.25632 5.28865 5.31336 5.35874 5.48975 5.51504 5.66881 5.74527 5.81466 5.85010 5.88452 5.99102 6.19216 6.29565 7.06981 7.17847 7.56478 7.63540 7.89901 8.07534 8.62491 9.19026 9.55459 10.06940 10.77233 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.001568 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.057481 B =17854.710734 C =18447.888135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.116 3.884 4 C 0.047 3.953 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.508 3.492 19 O -0.532 6.532 20 C -0.131 4.131 21 C -0.077 4.077 22 H 0.096 0.904 23 C -0.118 4.118 24 C -0.161 4.161 25 C 0.276 3.724 26 F -0.200 7.200 27 F -0.193 7.193 28 C -0.152 4.152 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.351 0.649 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.766 -26.440 11.502 32.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.350 5.350 3 C -0.007 4.007 4 C -0.084 4.084 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.296 3.704 19 O -0.408 6.408 20 C -0.171 4.171 21 C -0.096 4.096 22 H 0.114 0.886 23 C -0.156 4.156 24 C -0.199 4.199 25 C 0.239 3.761 26 F -0.181 7.181 27 F -0.174 7.174 28 C -0.190 4.190 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.170 0.830 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.122 0.878 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.420 -25.654 12.114 31.825 hybrid contribution 1.016 -0.095 -0.925 1.377 sum -13.404 -25.749 11.190 31.111 Atomic orbital electron populations 1.21859 0.79280 1.03571 1.02049 1.47868 1.07150 1.06213 1.73785 1.21425 0.98271 0.83830 0.97131 1.22245 0.98981 0.90582 0.96605 1.60019 1.28458 1.27792 1.13733 1.21653 1.00210 0.96121 0.90035 1.19791 0.85193 0.87313 0.85049 1.90521 1.59285 1.67250 1.29640 1.41860 1.50061 1.21368 1.06758 1.19716 1.30943 0.97667 0.94558 0.87891 1.25269 0.98184 0.99904 0.94638 1.69616 1.47092 1.40157 0.97482 0.85845 0.79414 0.81128 0.77821 1.20423 1.20932 1.19399 1.20703 0.88198 0.85382 0.76081 1.90736 1.13867 1.87245 1.48931 1.21763 0.98860 0.91746 1.04703 1.21731 0.96897 0.93022 0.97949 0.88614 1.22191 0.99491 0.93492 1.00401 1.23115 0.96234 0.99438 1.01115 1.21985 0.82902 0.96917 0.74253 1.92999 1.95949 1.92099 1.37081 1.93025 1.51743 1.96369 1.76298 1.23536 1.03354 0.92922 0.99170 0.92328 0.90472 0.91003 0.89351 0.89711 0.95161 0.91214 0.82951 0.93826 0.89650 0.77459 0.91890 0.88505 0.88214 0.90272 0.90277 0.88572 0.89093 0.87841 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 10.24 59.85 0.61 0.97 16 2 N -0.62 -5.31 2.87 -181.57 -0.52 -5.83 16 3 C 0.12 1.28 5.67 -4.04 -0.02 1.25 16 4 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 5 N -0.67 -11.08 6.12 -115.06 -0.70 -11.79 16 6 C 0.05 0.96 6.17 -4.97 -0.03 0.93 16 7 C 0.44 10.65 7.82 -10.99 -0.09 10.57 16 8 O -0.58 -16.12 15.78 5.55 0.09 -16.03 16 9 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 10 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 14 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.51 4.86 7.49 -10.98 -0.08 4.78 16 19 O -0.53 -7.32 14.30 5.56 0.08 -7.24 16 20 C -0.13 -0.69 3.61 -27.88 -0.10 -0.79 16 21 C -0.08 -0.50 2.45 -88.94 -0.22 -0.72 16 22 H 0.10 0.82 7.90 -51.93 -0.41 0.41 16 23 C -0.12 -0.48 6.37 -25.61 -0.16 -0.64 16 24 C -0.16 -0.84 6.41 -25.61 -0.16 -1.01 16 25 C 0.28 2.34 2.49 -25.07 -0.06 2.28 16 26 F -0.20 -2.00 17.16 2.25 0.04 -1.96 16 27 F -0.19 -2.13 17.17 2.25 0.04 -2.09 16 28 C -0.15 -1.20 5.34 -24.73 -0.13 -1.33 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 31 H 0.07 0.19 6.44 -51.92 -0.33 -0.14 16 32 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.35 6.16 8.43 -39.29 -0.33 5.83 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 40 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.10 0.32 7.98 -51.93 -0.41 -0.10 16 42 H 0.10 0.34 7.39 -51.93 -0.38 -0.05 16 43 H 0.08 0.18 7.84 -51.93 -0.41 -0.23 16 44 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.10 0.38 8.11 -51.93 -0.42 -0.04 16 46 H 0.09 0.45 8.12 -51.93 -0.42 0.02 16 47 H 0.10 1.08 7.28 -51.93 -0.38 0.70 16 48 H 0.09 0.61 7.96 -51.93 -0.41 0.19 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.82 401.11 -7.52 -42.34 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.51 Total: 10.24 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.71 Total: 8.74 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.56 Total: -56.29 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.82 -7.52 -42.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714719752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.436 kcal (2) G-P(sol) polarization free energy of solvation -34.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds