Wall clock time and date at job start Wed Apr 1 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.52996 * 109.47198 * 270.00278 * 3 2 1 5 5 N 1.46902 * 109.46980 * 179.97438 * 4 3 2 6 6 C 1.46902 * 110.99984 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47160 * 179.97438 * 6 5 4 8 8 O 1.21291 * 119.99802 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99962 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99888 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99715 * 359.97438 * 10 9 7 12 12 C 1.38955 * 119.99881 * 180.02562 * 10 9 7 13 13 N 1.31408 * 119.99660 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99890 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47374 * 89.99671 * 14 12 10 16 16 H 1.48505 * 109.47224 * 209.99872 * 14 12 10 17 17 H 1.48505 * 109.46956 * 329.99362 * 14 12 10 18 18 C 1.34784 * 119.99971 * 180.02562 * 2 1 3 19 19 O 1.21283 * 119.99649 * 179.97438 * 18 2 1 20 20 C 1.50697 * 119.99774 * 359.72768 * 18 2 1 21 21 C 1.53003 * 109.46624 * 180.02562 * 20 18 2 22 22 H 1.09002 * 110.43503 * 307.53023 * 21 20 18 23 23 C 1.54271 * 110.48264 * 184.99885 * 21 20 18 24 24 C 1.53874 * 106.59643 * 217.70801 * 23 21 20 25 25 C 1.54268 * 106.60040 * 0.02562 * 24 23 21 26 26 F 1.39900 * 110.49002 * 142.28955 * 25 24 23 27 27 F 1.39901 * 110.48695 * 264.79873 * 25 24 23 28 28 C 1.54886 * 104.19569 * 23.60771 * 25 24 23 29 29 H 1.08999 * 109.47256 * 269.99572 * 1 2 3 30 30 H 1.08998 * 109.47416 * 29.99674 * 1 2 3 31 31 H 1.09008 * 109.47058 * 150.00274 * 1 2 3 32 32 H 1.08997 * 109.46865 * 30.00228 * 3 2 1 33 33 H 1.08998 * 109.47058 * 149.99741 * 3 2 1 34 34 H 1.08997 * 109.47172 * 299.99762 * 4 3 2 35 35 H 1.08998 * 109.47554 * 59.99767 * 4 3 2 36 36 H 1.00897 * 111.00300 * 56.04602 * 5 4 3 37 37 H 1.08996 * 109.46779 * 299.99597 * 6 5 4 38 38 H 1.08999 * 109.47154 * 59.99702 * 6 5 4 39 39 H 0.97001 * 119.99956 * 359.97438 * 9 7 6 40 40 H 0.97003 * 119.99278 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.46809 * 299.99238 * 20 18 2 42 42 H 1.08993 * 109.47525 * 59.99679 * 20 18 2 43 43 H 1.08999 * 110.03420 * 336.99008 * 23 21 20 44 44 H 1.09004 * 110.03469 * 98.37718 * 23 21 20 45 45 H 1.09002 * 110.02932 * 119.28567 * 24 23 21 46 46 H 1.09000 * 110.03563 * 240.66514 * 24 23 21 47 47 H 1.08997 * 110.75775 * 203.74360 * 28 25 24 48 48 H 1.08999 * 110.76090 * 80.37272 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1865 2.9829 -1.4424 6 6 3.4491 3.4392 -2.8138 7 6 4.2013 4.7445 -2.7736 8 8 4.4897 5.2455 -1.7073 9 7 4.5535 5.3550 -3.9223 10 6 5.2382 6.5422 -3.8857 11 1 5.4950 6.9883 -2.9363 12 6 5.6009 7.1719 -5.0701 13 7 5.2879 6.6292 -6.2252 14 14 6.5344 8.7890 -5.0202 15 1 7.9944 8.5176 -5.0078 16 1 6.1911 9.5960 -6.2186 17 1 6.1599 9.5392 -3.7945 18 6 2.1389 -1.1673 -0.0005 19 8 3.3517 -1.1672 -0.0010 20 6 1.3854 -2.4723 0.0051 21 6 2.3797 -3.6352 0.0039 22 1 3.0969 -3.5219 -0.8091 23 6 1.6358 -4.9814 -0.1164 24 6 2.3870 -5.9803 0.7812 25 6 3.5607 -5.2062 1.4161 26 9 3.7579 -5.6147 2.7395 27 9 4.7292 -5.3896 0.6691 28 6 3.1095 -3.7253 1.3673 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1383 0.5139 34 1 3.0415 0.9508 -1.9563 35 1 1.5001 1.8408 -1.9563 36 1 4.0439 2.9058 -0.9162 37 1 4.0453 2.6919 -3.3374 38 1 2.5034 3.5812 -3.3369 39 1 4.3231 4.9540 -4.7750 40 1 5.5414 7.0686 -7.0520 41 1 0.7625 -2.5283 0.8979 42 1 0.7550 -2.5318 -0.8821 43 1 0.6071 -4.8715 0.2268 44 1 1.6494 -5.3245 -1.1509 45 1 1.7227 -6.3552 1.5599 46 1 2.7651 -6.8090 0.1826 47 1 3.9712 -3.0581 1.3889 48 1 2.4265 -3.5023 2.1870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714719752.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:36 Heat of formation + Delta-G solvation = -207.820724 kcal Electronic energy + Delta-G solvation = -29961.125033 eV Core-core repulsion = 25299.036940 eV Total energy + Delta-G solvation = -4662.088093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.89625 -48.05249 -41.12870 -40.18318 -38.54329 -37.36055 -36.22351 -35.70976 -33.30887 -32.54944 -30.80956 -29.59271 -28.12565 -27.52391 -26.55415 -25.28474 -23.25405 -22.13938 -21.37854 -21.10163 -20.09936 -19.87094 -18.57090 -18.19460 -17.93176 -17.59004 -17.26828 -17.13380 -16.90119 -16.51487 -16.36247 -15.97132 -15.71526 -15.37955 -15.16253 -15.05263 -14.88039 -14.54906 -14.39406 -14.21474 -14.14820 -13.88793 -13.77250 -13.54221 -13.41775 -13.35883 -13.06466 -12.91680 -12.77776 -12.63263 -12.58409 -12.43694 -12.29093 -12.12588 -12.11639 -12.04831 -11.53062 -11.50006 -11.44831 -10.77162 -10.41649 -10.04356 -9.67728 -9.45653 -8.48647 -5.97769 1.37062 1.40963 1.54025 1.66144 1.96598 2.01519 2.28781 2.76820 2.93862 2.97110 3.18102 3.22674 3.40595 3.49316 3.66415 3.97762 4.00202 4.07128 4.12174 4.23518 4.27000 4.31968 4.38134 4.41733 4.44637 4.48077 4.55053 4.58670 4.66802 4.72355 4.79986 4.80338 4.87906 4.94651 4.97401 5.02688 5.06421 5.25011 5.37107 5.39019 5.48866 5.81872 6.03819 6.24942 6.44305 6.57161 7.09873 7.22186 7.52618 8.07798 8.68766 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.019755 B = 0.001568 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.057481 B =17854.710734 C =18447.888135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.615 5.615 3 C 0.122 3.878 4 C 0.056 3.944 5 N -0.677 5.677 6 C 0.067 3.933 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.079 0.921 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.995 3.005 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.273 1.273 18 C 0.497 3.503 19 O -0.587 6.587 20 C -0.120 4.120 21 C -0.076 4.076 22 H 0.065 0.935 23 C -0.108 4.108 24 C -0.154 4.154 25 C 0.258 3.742 26 F -0.212 7.212 27 F -0.215 7.215 28 C -0.151 4.151 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.089 0.911 36 H 0.342 0.658 37 H 0.059 0.941 38 H 0.110 0.890 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 -27.562 10.986 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.347 5.347 3 C -0.002 4.002 4 C -0.074 4.074 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.466 4.466 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.197 1.197 18 C 0.288 3.712 19 O -0.467 6.467 20 C -0.159 4.159 21 C -0.096 4.096 22 H 0.083 0.917 23 C -0.145 4.145 24 C -0.192 4.192 25 C 0.222 3.778 26 F -0.193 7.193 27 F -0.196 7.196 28 C -0.189 4.189 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.107 0.893 36 H 0.160 0.840 37 H 0.077 0.923 38 H 0.128 0.872 39 H 0.231 0.769 40 H 0.088 0.912 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.130 0.870 44 H 0.106 0.894 45 H 0.134 0.866 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.539 -26.804 11.577 34.060 hybrid contribution 1.977 0.239 -0.720 2.117 sum -15.562 -26.564 10.857 32.646 Atomic orbital electron populations 1.22171 0.76402 1.05162 1.03621 1.47989 1.08806 1.04940 1.73001 1.21195 0.97831 0.85526 0.95660 1.22259 0.98802 0.88359 0.97959 1.60055 1.28170 1.30072 1.12601 1.21523 1.00561 0.92992 0.91504 1.20816 0.84240 0.88635 0.83887 1.90489 1.60673 1.68804 1.30972 1.41923 1.50330 1.21138 1.07495 1.19690 1.33245 0.99396 0.94241 0.90281 1.26073 0.98385 1.02898 0.93937 1.69674 1.47126 1.41293 0.97935 0.84900 0.78190 0.77036 0.78029 1.19716 1.19341 1.19729 1.21597 0.87874 0.86907 0.74853 1.90726 1.16495 1.88044 1.51394 1.21835 0.98348 0.88145 1.07611 1.21683 0.96882 0.95303 0.95686 0.91679 1.22200 1.00414 0.91051 1.00834 1.23160 0.94931 0.99409 1.01703 1.22573 0.83217 0.98174 0.73809 1.92967 1.96068 1.92252 1.38049 1.92976 1.53341 1.96527 1.76800 1.23525 1.02568 0.91761 1.01078 0.90749 0.90307 0.88071 0.88373 0.92358 0.96389 0.89312 0.84006 0.92273 0.87232 0.76936 0.91228 0.85273 0.85110 0.86989 0.89378 0.86606 0.88845 0.91579 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.24 127.77 1.31 1.70 16 2 N -0.61 -9.52 2.87 -846.76 -2.43 -11.95 16 3 C 0.12 2.64 5.67 86.38 0.49 3.13 16 4 C 0.06 1.40 6.01 86.30 0.52 1.92 16 5 N -0.68 -22.45 6.12 -517.94 -3.17 -25.62 16 6 C 0.07 2.39 6.17 85.56 0.53 2.92 16 7 C 0.44 21.47 7.82 87.66 0.69 22.15 16 8 O -0.62 -35.53 15.78 -3.06 -0.05 -35.58 16 9 N -0.57 -30.06 5.29 -306.98 -1.62 -31.68 16 10 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 11 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 12 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 13 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 14 Si 1.00 43.46 29.55 68.60 2.03 45.49 16 15 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C 0.50 9.03 7.49 87.65 0.66 9.69 16 19 O -0.59 -17.02 14.30 -3.04 -0.04 -17.06 16 20 C -0.12 -0.89 3.61 29.85 0.11 -0.78 16 21 C -0.08 -0.88 2.45 -9.71 -0.02 -0.91 16 22 H 0.06 1.16 7.90 -2.39 -0.02 1.14 16 23 C -0.11 -0.51 6.37 31.32 0.20 -0.31 16 24 C -0.15 -1.29 6.41 31.32 0.20 -1.09 16 25 C 0.26 4.41 2.49 31.67 0.08 4.49 16 26 F -0.21 -4.28 17.16 44.97 0.77 -3.50 16 27 F -0.22 -5.06 17.17 44.97 0.77 -4.29 16 28 C -0.15 -2.41 5.34 31.89 0.17 -2.24 16 29 H 0.07 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.08 0.47 8.07 -2.39 -0.02 0.46 16 31 H 0.10 0.02 6.44 -2.38 -0.02 0.00 16 32 H 0.10 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.06 1.57 7.42 -2.39 -0.02 1.56 16 34 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.34 12.41 8.43 -89.70 -0.76 11.65 16 37 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 40 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.13 0.19 7.98 -2.39 -0.02 0.17 16 42 H 0.13 0.22 7.39 -2.39 -0.02 0.21 16 43 H 0.11 -0.13 7.84 -2.39 -0.02 -0.15 16 44 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.12 0.53 8.11 -2.39 -0.02 0.51 16 46 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 47 H 0.07 1.55 7.28 -2.39 -0.02 1.53 16 48 H 0.11 1.31 7.96 -2.39 -0.02 1.29 16 Total: -1.00 -80.49 401.11 2.24 -78.25 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.50 Total: 34.02 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 6.20 Total: 21.77 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -6.95 Total: -119.10 kcal Atomic # 8 Polarization: -52.55 SS G_CDS: -0.09 Total: -52.64 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 1.54 Total: -7.80 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -80.49 2.24 -78.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714719752.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.566 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds