Wall clock time and date at job start Wed Apr 1 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46754 * 2 1 4 4 C 1.34776 * 119.99688 * 262.81455 * 3 2 1 5 5 O 1.21511 * 119.99947 * 174.67675 * 4 3 2 6 6 C 1.48139 * 119.99903 * 354.67834 * 4 3 2 7 7 C 1.40105 * 121.14620 * 46.94817 * 6 4 3 8 8 C 1.38501 * 117.82267 * 179.97438 * 7 6 4 9 9 N 1.31914 * 119.96923 * 0.02562 * 8 7 6 10 10 N 1.28274 * 122.51641 * 359.97438 * 9 8 7 11 11 C 1.31928 * 122.32709 * 359.72984 * 10 9 8 12 12 C 1.46494 * 120.00255 * 82.81614 * 3 2 1 13 13 H 1.09009 * 110.63010 * 356.89748 * 12 3 2 14 14 C 1.55134 * 110.85837 * 233.68447 * 12 3 2 15 15 C 1.54905 * 101.65701 * 205.89399 * 14 12 3 16 16 N 1.47839 * 104.79715 * 37.06758 * 15 14 12 17 17 C 1.46900 * 111.00303 * 213.63792 * 16 15 14 18 18 C 1.50695 * 109.46919 * 290.84355 * 17 16 15 19 19 O 1.21286 * 120.00239 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99742 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99877 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00438 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00059 * 179.72103 * 21 20 18 24 24 N 1.31411 * 120.00126 * 0.27352 * 23 21 20 25 25 Si 1.86796 * 120.00266 * 180.27334 * 23 21 20 26 26 H 1.48499 * 109.47092 * 89.99867 * 25 23 21 27 27 H 1.48503 * 109.47522 * 210.00085 * 25 23 21 28 28 H 1.48503 * 109.47478 * 330.00384 * 25 23 21 29 29 C 1.47445 * 108.56720 * 335.90759 * 16 15 14 30 30 H 1.08994 * 109.47351 * 290.48398 * 1 2 3 31 31 H 1.09000 * 109.46860 * 50.49053 * 1 2 3 32 32 H 1.09008 * 109.46765 * 170.48634 * 1 2 3 33 33 H 1.08991 * 109.47554 * 239.99776 * 2 1 3 34 34 H 1.08998 * 109.47159 * 119.99532 * 2 1 3 35 35 H 1.07999 * 121.08904 * 359.95206 * 7 6 4 36 36 H 1.08007 * 120.01607 * 179.97438 * 8 7 6 37 37 H 1.07996 * 120.17254 * 180.26935 * 11 10 9 38 38 H 1.09001 * 110.98997 * 323.98486 * 14 12 3 39 39 H 1.09010 * 110.99127 * 87.79817 * 14 12 3 40 40 H 1.09005 * 110.37122 * 278.23896 * 15 14 12 41 41 H 1.08998 * 110.37458 * 155.89810 * 15 14 12 42 42 H 1.09001 * 109.46667 * 170.84189 * 17 16 15 43 43 H 1.09000 * 109.46752 * 50.84451 * 17 16 15 44 44 H 0.97000 * 120.00098 * 359.97438 * 20 18 17 45 45 H 0.96995 * 120.00327 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.89270 * 120.39491 * 29 16 15 47 47 H 1.09004 * 109.88868 * 241.58272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3805 1.9679 -1.1581 5 8 2.6931 3.1421 -1.1726 6 6 2.3975 1.1813 -2.4132 7 6 1.3224 0.3546 -2.7649 8 6 1.4106 -0.3496 -3.9543 9 7 2.4826 -0.2292 -4.7135 10 7 3.4702 0.5259 -4.3972 11 6 3.4838 1.2428 -3.2899 12 6 2.1128 2.1248 1.2587 13 1 1.7319 1.5275 2.0872 14 6 1.3542 3.4745 1.1613 15 6 2.1023 4.3307 2.2134 16 7 3.5181 3.9217 2.0954 17 6 4.1909 3.9709 3.4003 18 6 4.3369 5.4059 3.8364 19 8 3.9218 6.2998 3.1295 20 7 4.9296 5.6961 5.0116 21 6 5.0620 7.0016 5.4086 22 1 4.6917 7.7976 4.7796 23 6 5.6679 7.3006 6.6228 24 7 6.1189 6.3321 7.3881 25 14 5.8414 9.0789 7.1673 26 1 4.6438 9.4760 7.9504 27 1 7.0547 9.2221 8.0116 28 1 5.9637 9.9528 5.9728 29 6 3.5683 2.5627 1.5258 30 1 -0.3634 0.3596 0.9626 31 1 -0.3633 0.6538 -0.7929 32 1 -0.3633 -1.0136 -0.1699 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.4536 0.2689 -2.1292 36 1 0.6023 -0.9977 -4.2597 37 1 4.3321 1.8704 -3.0600 38 1 1.4522 3.9065 0.1653 39 1 0.3050 3.3531 1.4311 40 1 1.7273 4.1154 3.2140 41 1 1.9935 5.3912 1.9865 42 1 5.1770 3.5139 3.3181 43 1 3.5982 3.4262 4.1353 44 1 5.2619 4.9812 5.5768 45 1 6.5421 6.5408 8.2355 46 1 4.1300 2.5725 0.5917 47 1 4.0365 1.8803 2.2354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715043718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:34 Heat of formation + Delta-G solvation = 25.360583 kcal Electronic energy + Delta-G solvation = -30503.166252 eV Core-core repulsion = 26301.878846 eV Total energy + Delta-G solvation = -4201.287406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.84193 -40.49801 -38.70110 -37.35049 -36.41909 -34.00089 -33.67864 -33.01756 -31.85160 -31.17547 -30.46740 -28.49925 -26.85541 -25.64360 -25.09241 -24.20566 -23.87609 -22.03746 -21.08152 -19.86506 -19.16983 -18.13071 -17.98253 -17.79999 -17.40495 -16.56271 -16.21844 -15.66800 -15.56381 -15.23647 -15.07593 -14.83953 -14.51729 -14.41370 -14.23481 -13.82298 -13.75701 -13.55273 -13.42686 -12.95959 -12.74614 -12.58531 -12.14766 -11.99669 -11.88125 -11.65191 -11.56879 -11.46557 -11.42932 -11.12519 -10.99126 -10.89122 -10.61434 -10.55375 -10.41672 -10.36255 -10.18373 -9.78153 -9.46114 -9.13048 -8.39168 -7.92941 -7.78752 -6.38298 -3.78638 -0.07034 0.36416 2.15296 2.35696 3.05266 3.19987 3.28300 3.34852 3.59681 3.65259 3.94632 3.95604 3.99056 4.07297 4.19810 4.27795 4.29856 4.43703 4.65610 4.69881 4.76535 4.85473 4.89032 4.97074 5.07975 5.11171 5.15208 5.26925 5.29126 5.37790 5.46523 5.54716 5.56757 5.61320 5.76030 5.78853 5.84037 5.94953 6.11372 6.32690 6.45004 6.52897 6.85464 7.30216 7.32656 7.58656 7.65967 8.10445 8.16319 8.66474 9.22426 9.58877 10.11529 10.79703 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.002024 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.268952 B =13827.427176 C =14290.594502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.092 3.908 3 N -0.595 5.595 4 C 0.556 3.444 5 O -0.488 6.488 6 C -0.120 4.120 7 C -0.102 4.102 8 C 0.037 3.963 9 N -0.232 5.232 10 N -0.239 5.239 11 C 0.089 3.911 12 C 0.128 3.872 13 H 0.097 0.903 14 C -0.148 4.148 15 C 0.060 3.940 16 N -0.495 5.495 17 C 0.040 3.960 18 C 0.446 3.554 19 O -0.574 6.574 20 N -0.568 5.568 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.020 3.980 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.039 3.961 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.391 0.609 45 H 0.270 0.730 46 H 0.082 0.918 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.834 -20.660 -14.765 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.031 4.031 3 N -0.328 5.328 4 C 0.342 3.658 5 O -0.361 6.361 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.127 4.127 9 N -0.074 5.074 10 N -0.080 5.080 11 C -0.076 4.076 12 C 0.024 3.976 13 H 0.115 0.885 14 C -0.186 4.186 15 C -0.068 4.068 16 N -0.219 5.219 17 C -0.092 4.092 18 C 0.231 3.769 19 O -0.457 6.457 20 N -0.205 5.205 21 C -0.425 4.425 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.546 5.546 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.091 4.091 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.182 0.818 36 H 0.196 0.804 37 H 0.199 0.801 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.761 -19.484 -16.775 28.273 hybrid contribution -0.882 0.089 2.774 2.912 sum -12.643 -19.396 -14.001 27.057 Atomic orbital electron populations 1.22390 0.95377 1.02675 1.03286 1.21865 0.94829 0.82345 1.04015 1.47833 1.64495 1.13977 1.06507 1.18026 0.78371 0.86857 0.82592 1.90919 1.45537 1.14460 1.85145 1.21299 0.96763 0.97887 0.97515 1.23148 0.99237 0.93035 0.97690 1.24359 0.98335 0.98337 0.91652 1.72911 0.97584 1.10776 1.26119 1.73162 1.17927 1.02757 1.14122 1.24564 0.97874 0.95401 0.89733 1.22469 0.97460 0.93414 0.84270 0.88456 1.23273 0.98039 0.94201 1.03093 1.22932 0.86048 1.01582 0.96245 1.63206 1.14733 1.20922 1.23067 1.22146 0.99744 0.97277 0.90032 1.19727 0.84313 0.89616 0.83278 1.90519 1.52880 1.47962 1.54350 1.41858 1.52279 1.08822 1.17538 1.19692 1.35809 0.84083 1.02958 0.87959 1.25247 0.97030 0.99700 0.96102 1.69610 1.40188 1.32088 1.12693 0.85865 0.77611 0.82179 0.78683 1.20498 1.20972 1.19412 1.23161 0.95140 0.89871 1.00887 0.91330 0.91871 0.90781 0.89932 0.89637 0.81819 0.80417 0.80092 0.87870 0.91345 0.94181 0.88588 0.89480 0.93490 0.77589 0.91972 0.89990 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 9.18 37.16 0.34 -0.23 16 2 C 0.09 0.42 5.56 -4.04 -0.02 0.40 16 3 N -0.59 -4.94 2.54 -165.04 -0.42 -5.36 16 4 C 0.56 5.81 6.42 -12.20 -0.08 5.73 16 5 O -0.49 -7.18 13.44 5.36 0.07 -7.11 16 6 C -0.12 -1.02 5.04 -104.58 -0.53 -1.55 16 7 C -0.10 -0.58 7.67 -38.78 -0.30 -0.88 16 8 C 0.04 0.22 11.30 -17.42 -0.20 0.02 16 9 N -0.23 -2.25 11.48 30.53 0.35 -1.90 16 10 N -0.24 -2.59 11.49 30.78 0.35 -2.23 16 11 C 0.09 0.85 11.05 -16.95 -0.19 0.66 16 12 C 0.13 1.31 3.42 -66.11 -0.23 1.08 16 13 H 0.10 0.79 7.97 -51.92 -0.41 0.38 16 14 C -0.15 -1.85 6.39 -24.60 -0.16 -2.01 16 15 C 0.06 0.97 5.74 -2.30 -0.01 0.96 16 16 N -0.50 -8.59 4.86 -232.69 -1.13 -9.72 16 17 C 0.04 0.72 5.05 -4.98 -0.03 0.69 16 18 C 0.45 10.73 7.58 -10.99 -0.08 10.65 16 19 O -0.57 -15.90 14.61 5.55 0.08 -15.82 16 20 N -0.57 -14.57 5.29 -10.97 -0.06 -14.63 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C 0.04 0.51 6.16 -2.83 -0.02 0.49 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.22 6.27 -51.93 -0.33 -0.10 16 32 H 0.07 0.10 8.14 -51.92 -0.42 -0.32 16 33 H 0.08 0.33 5.22 -51.93 -0.27 0.06 16 34 H 0.09 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.16 0.53 4.00 -52.49 -0.21 0.32 16 36 H 0.18 0.38 8.06 -52.48 -0.42 -0.04 16 37 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.10 1.53 5.53 -51.93 -0.29 1.24 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.04 0.63 7.62 -51.93 -0.40 0.23 16 41 H 0.10 1.88 7.38 -51.93 -0.38 1.50 16 42 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 43 H 0.05 0.75 7.85 -51.93 -0.41 0.35 16 44 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.08 1.19 6.56 -51.93 -0.34 0.85 16 47 H 0.05 0.63 7.55 -51.93 -0.39 0.23 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -35.76 379.38 -7.28 -43.03 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -6.21 Total: 7.79 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.73 Total: 7.99 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.18 Total: -57.91 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.15 Total: -22.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.76 -7.28 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715043718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.394 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds