Wall clock time and date at job start Wed Apr 1 2020 04:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.46754 * 2 1 4 4 C 1.34776 * 119.99688 * 262.81455 * 3 2 1 5 5 O 1.21511 * 119.99947 * 174.67675 * 4 3 2 6 6 C 1.48139 * 119.99903 * 354.67834 * 4 3 2 7 7 C 1.40105 * 121.14620 * 46.94817 * 6 4 3 8 8 C 1.38501 * 117.82267 * 179.97438 * 7 6 4 9 9 N 1.31914 * 119.96923 * 0.02562 * 8 7 6 10 10 N 1.28274 * 122.51641 * 359.97438 * 9 8 7 11 11 C 1.31928 * 122.32709 * 359.72984 * 10 9 8 12 12 C 1.46494 * 120.00255 * 82.81614 * 3 2 1 13 13 H 1.09009 * 110.63010 * 356.89748 * 12 3 2 14 14 C 1.55134 * 110.85837 * 233.68447 * 12 3 2 15 15 C 1.54905 * 101.65701 * 205.89399 * 14 12 3 16 16 N 1.47839 * 104.79715 * 37.06758 * 15 14 12 17 17 C 1.46900 * 111.00303 * 213.63792 * 16 15 14 18 18 C 1.50695 * 109.46919 * 290.84355 * 17 16 15 19 19 O 1.21286 * 120.00239 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99742 * 180.02562 * 18 17 16 21 21 C 1.37094 * 119.99877 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00438 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00059 * 179.72103 * 21 20 18 24 24 N 1.31411 * 120.00126 * 0.27352 * 23 21 20 25 25 Si 1.86796 * 120.00266 * 180.27334 * 23 21 20 26 26 H 1.48499 * 109.47092 * 89.99867 * 25 23 21 27 27 H 1.48503 * 109.47522 * 210.00085 * 25 23 21 28 28 H 1.48503 * 109.47478 * 330.00384 * 25 23 21 29 29 C 1.47445 * 108.56720 * 335.90759 * 16 15 14 30 30 H 1.08994 * 109.47351 * 290.48398 * 1 2 3 31 31 H 1.09000 * 109.46860 * 50.49053 * 1 2 3 32 32 H 1.09008 * 109.46765 * 170.48634 * 1 2 3 33 33 H 1.08991 * 109.47554 * 239.99776 * 2 1 3 34 34 H 1.08998 * 109.47159 * 119.99532 * 2 1 3 35 35 H 1.07999 * 121.08904 * 359.95206 * 7 6 4 36 36 H 1.08007 * 120.01607 * 179.97438 * 8 7 6 37 37 H 1.07996 * 120.17254 * 180.26935 * 11 10 9 38 38 H 1.09001 * 110.98997 * 323.98486 * 14 12 3 39 39 H 1.09010 * 110.99127 * 87.79817 * 14 12 3 40 40 H 1.09005 * 110.37122 * 278.23896 * 15 14 12 41 41 H 1.08998 * 110.37458 * 155.89810 * 15 14 12 42 42 H 1.09001 * 109.46667 * 170.84189 * 17 16 15 43 43 H 1.09000 * 109.46752 * 50.84451 * 17 16 15 44 44 H 0.97000 * 120.00098 * 359.97438 * 20 18 17 45 45 H 0.96995 * 120.00327 * 179.97438 * 24 23 21 46 46 H 1.09000 * 109.89270 * 120.39491 * 29 16 15 47 47 H 1.09004 * 109.88868 * 241.58272 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3805 1.9679 -1.1581 5 8 2.6931 3.1421 -1.1726 6 6 2.3975 1.1813 -2.4132 7 6 1.3224 0.3546 -2.7649 8 6 1.4106 -0.3496 -3.9543 9 7 2.4826 -0.2292 -4.7135 10 7 3.4702 0.5259 -4.3972 11 6 3.4838 1.2428 -3.2899 12 6 2.1128 2.1248 1.2587 13 1 1.7319 1.5275 2.0872 14 6 1.3542 3.4745 1.1613 15 6 2.1023 4.3307 2.2134 16 7 3.5181 3.9217 2.0954 17 6 4.1909 3.9709 3.4003 18 6 4.3369 5.4059 3.8364 19 8 3.9218 6.2998 3.1295 20 7 4.9296 5.6961 5.0116 21 6 5.0620 7.0016 5.4086 22 1 4.6917 7.7976 4.7796 23 6 5.6679 7.3006 6.6228 24 7 6.1189 6.3321 7.3881 25 14 5.8414 9.0789 7.1673 26 1 4.6438 9.4760 7.9504 27 1 7.0547 9.2221 8.0116 28 1 5.9637 9.9528 5.9728 29 6 3.5683 2.5627 1.5258 30 1 -0.3634 0.3596 0.9626 31 1 -0.3633 0.6538 -0.7929 32 1 -0.3633 -1.0136 -0.1699 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 0.4536 0.2689 -2.1292 36 1 0.6023 -0.9977 -4.2597 37 1 4.3321 1.8704 -3.0600 38 1 1.4522 3.9065 0.1653 39 1 0.3050 3.3531 1.4311 40 1 1.7273 4.1154 3.2140 41 1 1.9935 5.3912 1.9865 42 1 5.1770 3.5139 3.3181 43 1 3.5982 3.4262 4.1353 44 1 5.2619 4.9812 5.5768 45 1 6.5421 6.5408 8.2355 46 1 4.1300 2.5725 0.5917 47 1 4.0365 1.8803 2.2354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715043718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:30 Heat of formation + Delta-G solvation = -2.808679 kcal Electronic energy + Delta-G solvation = -30504.387763 eV Core-core repulsion = 26301.878846 eV Total energy + Delta-G solvation = -4202.508917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.50858 -41.33600 -40.25950 -38.76627 -37.16761 -35.92954 -34.54343 -33.63651 -33.32184 -32.62893 -31.27542 -29.54003 -28.30286 -26.59259 -25.86885 -25.67514 -24.32184 -22.87969 -22.37920 -21.00087 -20.61522 -19.88758 -18.78034 -18.61174 -18.02898 -17.78669 -17.29426 -16.91897 -16.51176 -16.34965 -16.13985 -15.89016 -15.73114 -15.55600 -15.34843 -15.21860 -14.70799 -14.54667 -14.37271 -13.97615 -13.88446 -13.56165 -13.37345 -13.26676 -13.02064 -12.84995 -12.56158 -12.53673 -12.42165 -12.31776 -12.19124 -12.12893 -12.09645 -11.94943 -11.49450 -11.25603 -11.17987 -11.12076 -10.56966 -10.30974 -10.00539 -9.87899 -9.11809 -8.46684 -5.94987 -0.68051 -0.19923 1.36860 1.39442 1.40432 1.53236 1.67308 2.06294 2.28487 2.43509 2.83125 3.01131 3.06488 3.19728 3.35445 3.36511 3.52021 3.63248 3.71898 3.75590 3.90898 4.07223 4.24067 4.28490 4.31786 4.35739 4.37726 4.41597 4.43408 4.49897 4.50812 4.62645 4.73312 4.76647 4.88954 4.93428 4.96186 5.06125 5.10551 5.21382 5.40186 5.40757 5.57379 5.90465 6.04801 6.13116 6.22329 6.61883 6.91880 7.13731 7.54515 7.57078 8.14215 8.70776 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.002024 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.268952 B =13827.427176 C =14290.594502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.086 3.914 3 N -0.586 5.586 4 C 0.557 3.443 5 O -0.542 6.542 6 C -0.131 4.131 7 C -0.077 4.077 8 C 0.049 3.951 9 N -0.263 5.263 10 N -0.270 5.270 11 C 0.078 3.922 12 C 0.140 3.860 13 H 0.135 0.865 14 C -0.137 4.137 15 C 0.060 3.940 16 N -0.529 5.529 17 C 0.055 3.945 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.075 0.925 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.269 1.269 27 H -0.269 1.269 28 H -0.276 1.276 29 C 0.039 3.961 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.196 0.804 36 H 0.223 0.777 37 H 0.175 0.825 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.062 0.938 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.761 -23.845 -13.910 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.035 4.035 3 N -0.317 5.317 4 C 0.343 3.657 5 O -0.419 6.419 6 C -0.145 4.145 7 C -0.106 4.106 8 C -0.115 4.115 9 N -0.104 5.104 10 N -0.110 5.110 11 C -0.088 4.088 12 C 0.036 3.964 13 H 0.153 0.847 14 C -0.175 4.175 15 C -0.067 4.067 16 N -0.254 5.254 17 C -0.077 4.077 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.093 0.907 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.194 1.194 28 H -0.201 1.201 29 C -0.089 4.089 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.213 0.787 36 H 0.240 0.760 37 H 0.192 0.808 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.095 0.905 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.687 -22.751 -15.920 30.958 hybrid contribution -0.334 1.033 2.473 2.701 sum -14.021 -21.718 -13.447 29.139 Atomic orbital electron populations 1.22395 0.93771 1.04253 1.03130 1.22206 0.96042 0.79899 1.05402 1.47885 1.63515 1.15227 1.05090 1.18306 0.77477 0.86263 0.83625 1.90907 1.48053 1.16888 1.86033 1.21151 0.97702 0.98909 0.96743 1.23493 0.98703 0.90860 0.97560 1.25042 0.97924 0.97804 0.90767 1.72811 0.98641 1.11356 1.27558 1.73108 1.19261 1.03873 1.14802 1.24525 0.98522 0.95663 0.90061 1.22355 0.94874 0.92999 0.86155 0.84719 1.23123 0.99344 0.94767 1.00298 1.22774 0.86510 0.99640 0.97816 1.62985 1.15372 1.24239 1.22762 1.21990 1.01541 0.92866 0.91276 1.20851 0.82343 0.92010 0.82086 1.90496 1.54216 1.50229 1.55402 1.41914 1.52882 1.08174 1.18321 1.19619 1.37847 0.84854 1.03794 0.90669 1.26013 0.95998 1.03780 0.95509 1.69663 1.39847 1.33646 1.12935 0.84947 0.78283 0.77171 0.78041 1.19485 1.19415 1.20115 1.23144 0.97400 0.88139 1.00229 0.91568 0.92144 0.88159 0.89115 0.87819 0.78740 0.76033 0.80769 0.90517 0.88637 0.93420 0.93428 0.87631 0.90459 0.76971 0.91305 0.92009 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.26 9.18 71.98 0.66 0.40 16 2 C 0.09 0.42 5.56 86.38 0.48 0.90 16 3 N -0.59 -8.29 2.54 -794.35 -2.02 -10.31 16 4 C 0.56 11.34 6.42 86.87 0.56 11.90 16 5 O -0.54 -16.76 13.44 -3.75 -0.05 -16.81 16 6 C -0.13 -2.11 5.04 -19.83 -0.10 -2.20 16 7 C -0.08 -0.64 7.67 22.79 0.17 -0.47 16 8 C 0.05 0.43 11.30 84.74 0.96 1.39 16 9 N -0.26 -4.80 11.48 -57.33 -0.66 -5.46 16 10 N -0.27 -5.97 11.49 -56.53 -0.65 -6.62 16 11 C 0.08 1.54 11.05 85.04 0.94 2.48 16 12 C 0.14 2.52 3.42 46.17 0.16 2.68 16 13 H 0.14 1.51 7.97 -2.38 -0.02 1.50 16 14 C -0.14 -3.33 6.39 31.98 0.20 -3.12 16 15 C 0.06 2.01 5.74 86.77 0.50 2.51 16 16 N -0.53 -18.48 4.86 -890.10 -4.33 -22.81 16 17 C 0.05 1.95 5.05 85.56 0.43 2.38 16 18 C 0.44 21.82 7.58 87.66 0.66 22.48 16 19 O -0.62 -36.10 14.61 -3.05 -0.04 -36.15 16 20 N -0.57 -30.25 5.29 -306.99 -1.62 -31.87 16 21 C -0.33 -19.31 9.68 84.04 0.81 -18.49 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 25 Si 0.99 43.85 29.55 68.60 2.03 45.87 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 29 C 0.04 0.98 6.16 86.65 0.53 1.52 16 30 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.14 6.27 -2.39 -0.01 0.13 16 32 H 0.10 -0.31 8.14 -2.38 -0.02 -0.33 16 33 H 0.09 0.34 5.22 -2.39 -0.01 0.32 16 34 H 0.10 0.23 8.12 -2.39 -0.02 0.21 16 35 H 0.20 0.35 4.00 -2.91 -0.01 0.34 16 36 H 0.22 -0.16 8.06 -2.91 -0.02 -0.18 16 37 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.08 2.35 5.53 -2.39 -0.01 2.34 16 39 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.05 1.48 7.62 -2.38 -0.02 1.46 16 41 H 0.05 2.01 7.38 -2.39 -0.02 2.00 16 42 H 0.11 3.37 8.03 -2.39 -0.02 3.35 16 43 H 0.08 2.30 7.85 -2.39 -0.02 2.28 16 44 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 46 H 0.06 1.81 6.56 -2.39 -0.02 1.80 16 47 H 0.08 1.59 7.55 -2.39 -0.02 1.57 16 Total: -1.00 -84.51 379.38 0.67 -83.84 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.29 Total: 26.01 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 7.44 Total: 24.09 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -9.00 Total: -126.86 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.09 Total: -52.96 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -84.51 0.67 -83.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715043718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.033 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds