Wall clock time and date at job start Wed Apr 1 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46495 * 109.47218 * 2 1 4 4 C 1.34774 * 119.99835 * 275.98628 * 3 2 1 5 5 O 1.21483 * 119.99905 * 187.47164 * 4 3 2 6 6 C 1.48453 * 120.00557 * 7.46988 * 4 3 2 7 7 C 1.39527 * 120.55405 * 186.05194 * 6 4 3 8 8 C 1.38765 * 118.26523 * 179.74021 * 7 6 4 9 9 N 1.32209 * 119.14427 * 0.53390 * 8 7 6 10 10 C 1.31877 * 121.03753 * 359.72627 * 9 8 7 11 11 N 1.31587 * 121.91673 * 359.97438 * 10 9 8 12 12 C 1.46497 * 119.99881 * 95.99134 * 3 2 1 13 13 H 1.08999 * 110.27476 * 5.54766 * 12 3 2 14 14 C 1.54605 * 110.38847 * 243.41022 * 12 3 2 15 15 C 1.54937 * 102.91772 * 262.99355 * 14 12 3 16 16 N 1.48527 * 103.23357 * 322.58785 * 15 14 12 17 17 C 1.46899 * 111.00094 * 159.71860 * 16 15 14 18 18 C 1.50693 * 109.47069 * 52.60882 * 17 16 15 19 19 O 1.21298 * 120.00262 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00447 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99393 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00216 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99889 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00111 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47281 * 89.99871 * 25 23 21 27 27 H 1.48504 * 109.47154 * 210.00567 * 25 23 21 28 28 H 1.48505 * 109.46667 * 330.00004 * 25 23 21 29 29 C 1.47903 * 105.81764 * 39.20482 * 16 15 14 30 30 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46638 * 300.00121 * 1 2 3 32 32 H 1.08997 * 109.46860 * 59.99737 * 1 2 3 33 33 H 1.09000 * 109.46638 * 239.99879 * 2 1 3 34 34 H 1.08997 * 109.46860 * 120.00263 * 2 1 3 35 35 H 1.08001 * 120.87022 * 359.97438 * 7 6 4 36 36 H 1.07999 * 120.42852 * 180.26626 * 8 7 6 37 37 H 1.08001 * 119.04635 * 179.97438 * 10 9 8 38 38 H 1.08994 * 110.72574 * 21.35202 * 14 12 3 39 39 H 1.08998 * 110.72178 * 144.46035 * 14 12 3 40 40 H 1.09002 * 110.66301 * 81.02630 * 15 14 12 41 41 H 1.09005 * 110.66807 * 204.14916 * 15 14 12 42 42 H 1.09006 * 109.46815 * 172.60230 * 17 16 15 43 43 H 1.08997 * 109.46976 * 292.60309 * 17 16 15 44 44 H 0.97001 * 119.99995 * 359.97438 * 20 18 17 45 45 H 0.97008 * 119.99729 * 179.97438 * 24 23 21 46 46 H 1.08999 * 109.91780 * 215.31841 * 29 16 15 47 47 H 1.09001 * 109.91888 * 94.02265 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1283 2.0570 -1.1608 5 8 2.6585 3.1499 -1.1796 6 6 1.6014 1.4661 -2.4167 7 6 1.8193 2.0956 -3.6427 8 6 1.3103 1.4988 -4.7874 9 7 0.6325 0.3690 -4.6775 10 6 0.4401 -0.1969 -3.5019 11 7 0.9092 0.3298 -2.3911 12 6 2.3874 2.0276 1.2618 13 1 2.3316 1.3128 2.0828 14 6 1.4633 3.2358 1.5384 15 6 2.2968 4.4350 1.0209 16 7 3.6857 4.0744 1.4043 17 6 4.6640 4.8225 0.6035 18 6 4.3559 6.2955 0.6818 19 8 3.4138 6.6840 1.3396 20 7 5.1266 7.1813 0.0201 21 6 4.8461 8.5215 0.0909 22 1 4.0077 8.8673 0.6773 23 6 5.6410 9.4346 -0.5909 24 7 6.6614 9.0137 -1.3040 25 14 5.2592 11.2606 -0.4938 26 1 5.9885 11.8586 0.6531 27 1 5.6866 11.9233 -1.7522 28 1 3.7985 11.4515 -0.3054 29 6 3.8055 2.6199 1.1643 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.3729 3.0211 -3.6998 36 1 1.4620 1.9536 -5.7551 37 1 -0.1187 -1.1196 -3.4493 38 1 0.5315 3.1444 0.9806 39 1 1.2644 3.3328 2.6057 40 1 2.2080 4.5265 -0.0616 41 1 1.9893 5.3580 1.5125 42 1 5.6663 4.6399 0.9910 43 1 4.6104 4.4947 -0.4346 44 1 5.8798 6.8707 -0.5063 45 1 7.2162 9.6513 -1.7803 46 1 4.4485 2.1704 1.9209 47 1 4.2154 2.4401 0.1704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715046789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:07 Heat of formation + Delta-G solvation = 35.220961 kcal Electronic energy + Delta-G solvation = -31531.840850 eV Core-core repulsion = 27330.981022 eV Total energy + Delta-G solvation = -4200.859828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.74546 -40.39117 -38.41728 -37.04568 -36.14548 -34.13585 -33.72969 -32.44409 -31.66807 -31.08285 -30.03165 -28.22077 -26.69506 -25.59837 -24.76787 -24.05380 -23.57849 -21.75551 -20.95132 -19.86792 -19.00087 -18.00502 -17.78734 -17.69084 -16.40368 -16.24946 -15.93761 -15.84367 -15.57334 -15.01032 -14.84109 -14.73253 -14.50357 -14.33891 -14.12818 -13.76665 -13.44524 -13.32881 -13.18887 -12.79584 -12.41571 -12.12794 -11.94581 -11.68506 -11.61675 -11.54029 -11.42835 -11.25124 -11.13945 -10.95532 -10.84582 -10.54421 -10.49283 -10.33101 -10.17789 -10.13147 -10.07341 -9.49504 -9.39090 -8.80974 -8.17726 -7.87477 -7.59219 -6.33110 -3.73264 0.14831 0.51881 2.48335 2.59969 3.23127 3.30709 3.36957 3.43022 3.50928 3.73391 4.03013 4.04797 4.21541 4.44787 4.53237 4.65282 4.74731 4.78670 4.88206 5.12799 5.16026 5.19975 5.22115 5.30477 5.32666 5.36485 5.54413 5.68608 5.71790 5.82864 5.84643 5.90305 5.97731 6.04850 6.14790 6.21032 6.22630 6.36890 6.42972 6.53917 6.72619 6.89389 7.12281 7.46123 7.52268 7.54452 7.63440 7.98048 8.16554 8.72772 9.27591 9.65359 10.18282 10.84995 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.002869 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.736897 B = 9755.746477 C =11156.209433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.117 3.883 3 N -0.588 5.588 4 C 0.559 3.441 5 O -0.496 6.496 6 C 0.130 3.870 7 C -0.166 4.166 8 C 0.149 3.851 9 N -0.508 5.508 10 C 0.281 3.719 11 N -0.483 5.483 12 C 0.137 3.863 13 H 0.098 0.902 14 C -0.135 4.135 15 C 0.033 3.967 16 N -0.487 5.487 17 C 0.040 3.960 18 C 0.449 3.551 19 O -0.582 6.582 20 N -0.566 5.566 21 C -0.295 4.295 22 H 0.102 0.898 23 C 0.020 3.980 24 N -0.904 5.904 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.030 3.970 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.162 0.838 36 H 0.177 0.823 37 H 0.200 0.800 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.392 0.608 45 H 0.270 0.730 46 H 0.075 0.925 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.230 -23.350 -3.650 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.006 4.006 3 N -0.321 5.321 4 C 0.344 3.656 5 O -0.370 6.370 6 C -0.017 4.017 7 C -0.188 4.188 8 C -0.018 4.018 9 N -0.222 5.222 10 C -0.007 4.007 11 N -0.200 5.200 12 C 0.033 3.967 13 H 0.116 0.884 14 C -0.174 4.174 15 C -0.094 4.094 16 N -0.211 5.211 17 C -0.091 4.091 18 C 0.235 3.765 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.425 4.425 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.546 5.546 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.100 4.100 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.180 0.820 36 H 0.194 0.806 37 H 0.217 0.783 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.124 0.876 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.811 -23.080 -2.686 25.628 hybrid contribution 0.674 1.136 -1.321 1.868 sum -10.138 -21.944 -4.007 24.502 Atomic orbital electron populations 1.22181 0.95508 1.01836 1.01923 1.21743 0.95223 0.80979 1.02607 1.48014 1.63750 1.14524 1.05776 1.17909 0.80231 0.84812 0.82616 1.90834 1.41693 1.19426 1.85009 1.21768 0.93770 0.91439 0.94751 1.23075 1.00202 1.02563 0.92977 1.23388 0.89327 0.89869 0.99203 1.68347 1.14212 1.10563 1.29084 1.25091 0.94098 0.98784 0.82709 1.69027 1.09145 1.10305 1.31536 1.22093 0.95208 0.95289 0.84060 0.88387 1.22988 0.97735 0.94875 1.01766 1.23719 0.86719 0.97963 1.01016 1.64735 1.03935 1.01137 1.51299 1.22014 0.96667 0.93701 0.96768 1.19777 0.85551 0.87022 0.84151 1.90425 1.31228 1.79950 1.45032 1.41841 1.28034 1.06397 1.43960 1.19688 1.13230 0.81236 1.28334 0.88018 1.25238 0.95779 1.00502 0.96543 1.69626 1.17502 1.35558 1.31867 0.85879 0.78881 0.82190 0.77445 1.20472 1.21019 1.19490 1.23171 0.95280 0.90823 1.00692 0.92101 0.93552 0.91193 0.89173 0.91138 0.82004 0.80623 0.78342 0.91669 0.90305 0.91117 0.87568 0.90063 0.92447 0.77534 0.92018 0.90662 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.44 37.16 0.35 -0.83 16 2 C 0.12 0.93 5.71 -4.04 -0.02 0.91 16 3 N -0.59 -6.46 2.44 -165.44 -0.40 -6.86 16 4 C 0.56 7.24 6.82 -12.05 -0.08 7.16 16 5 O -0.50 -8.09 9.67 5.38 0.05 -8.04 16 6 C 0.13 1.41 6.48 -82.64 -0.54 0.87 16 7 C -0.17 -1.62 9.72 -38.91 -0.38 -2.00 16 8 C 0.15 1.20 11.31 -17.19 -0.19 1.00 16 9 N -0.51 -4.40 10.42 -14.59 -0.15 -4.55 16 10 C 0.28 2.12 12.28 -92.26 -1.13 0.98 16 11 N -0.48 -4.24 3.94 -11.14 -0.04 -4.29 16 12 C 0.14 1.64 3.57 -66.57 -0.24 1.40 16 13 H 0.10 0.93 7.74 -51.93 -0.40 0.53 16 14 C -0.13 -1.90 6.41 -24.87 -0.16 -2.06 16 15 C 0.03 0.61 4.64 -1.90 -0.01 0.60 16 16 N -0.49 -9.00 5.24 -231.90 -1.22 -10.22 16 17 C 0.04 0.81 5.40 -4.98 -0.03 0.79 16 18 C 0.45 11.30 7.49 -10.99 -0.08 11.22 16 19 O -0.58 -16.23 13.09 5.54 0.07 -16.15 16 20 N -0.57 -15.12 5.29 -10.97 -0.06 -15.17 16 21 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -25.36 13.05 55.50 0.72 -24.64 16 25 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.03 0.43 5.72 -2.76 -0.02 0.41 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.63 5.79 -51.93 -0.30 0.33 16 33 H 0.09 0.73 6.01 -51.93 -0.31 0.41 16 34 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 35 H 0.16 1.61 7.75 -52.49 -0.41 1.21 16 36 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.06 0.90 8.05 -51.93 -0.42 0.48 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.47 5.03 -51.93 -0.26 1.21 16 41 H 0.11 2.37 5.97 -51.93 -0.31 2.06 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 43 H 0.06 1.15 6.84 -51.93 -0.36 0.80 16 44 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.84 5.78 -51.93 -0.30 0.54 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -34.01 371.13 -9.48 -43.50 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.26 Total: 11.92 kcal Atomic # 6 Polarization: 15.04 SS G_CDS: -2.77 Total: 12.28 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -1.15 Total: -65.73 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 0.12 Total: -24.19 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.01 -9.48 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715046789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.717 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds