Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46495 * 109.47218 * 2 1 4 4 C 1.34774 * 119.99835 * 275.98628 * 3 2 1 5 5 O 1.21483 * 119.99905 * 187.47164 * 4 3 2 6 6 C 1.48453 * 120.00557 * 7.46988 * 4 3 2 7 7 C 1.39527 * 120.55405 * 186.05194 * 6 4 3 8 8 C 1.38765 * 118.26523 * 179.74021 * 7 6 4 9 9 N 1.32209 * 119.14427 * 0.53390 * 8 7 6 10 10 C 1.31877 * 121.03753 * 359.72627 * 9 8 7 11 11 N 1.31587 * 121.91673 * 359.97438 * 10 9 8 12 12 C 1.46497 * 119.99881 * 95.99134 * 3 2 1 13 13 H 1.08999 * 110.27476 * 5.54766 * 12 3 2 14 14 C 1.54605 * 110.38847 * 243.41022 * 12 3 2 15 15 C 1.54937 * 102.91772 * 262.99355 * 14 12 3 16 16 N 1.48527 * 103.23357 * 322.58785 * 15 14 12 17 17 C 1.46899 * 111.00094 * 159.71860 * 16 15 14 18 18 C 1.50693 * 109.47069 * 52.60882 * 17 16 15 19 19 O 1.21298 * 120.00262 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00118 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00447 * 179.97438 * 20 18 17 22 22 H 1.07994 * 119.99393 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00216 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99889 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00111 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47281 * 89.99871 * 25 23 21 27 27 H 1.48504 * 109.47154 * 210.00567 * 25 23 21 28 28 H 1.48505 * 109.46667 * 330.00004 * 25 23 21 29 29 C 1.47903 * 105.81764 * 39.20482 * 16 15 14 30 30 H 1.08995 * 109.47012 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46638 * 300.00121 * 1 2 3 32 32 H 1.08997 * 109.46860 * 59.99737 * 1 2 3 33 33 H 1.09000 * 109.46638 * 239.99879 * 2 1 3 34 34 H 1.08997 * 109.46860 * 120.00263 * 2 1 3 35 35 H 1.08001 * 120.87022 * 359.97438 * 7 6 4 36 36 H 1.07999 * 120.42852 * 180.26626 * 8 7 6 37 37 H 1.08001 * 119.04635 * 179.97438 * 10 9 8 38 38 H 1.08994 * 110.72574 * 21.35202 * 14 12 3 39 39 H 1.08998 * 110.72178 * 144.46035 * 14 12 3 40 40 H 1.09002 * 110.66301 * 81.02630 * 15 14 12 41 41 H 1.09005 * 110.66807 * 204.14916 * 15 14 12 42 42 H 1.09006 * 109.46815 * 172.60230 * 17 16 15 43 43 H 1.08997 * 109.46976 * 292.60309 * 17 16 15 44 44 H 0.97001 * 119.99995 * 359.97438 * 20 18 17 45 45 H 0.97008 * 119.99729 * 179.97438 * 24 23 21 46 46 H 1.08999 * 109.91780 * 215.31841 * 29 16 15 47 47 H 1.09001 * 109.91888 * 94.02265 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1283 2.0570 -1.1608 5 8 2.6585 3.1499 -1.1796 6 6 1.6014 1.4661 -2.4167 7 6 1.8193 2.0956 -3.6427 8 6 1.3103 1.4988 -4.7874 9 7 0.6325 0.3690 -4.6775 10 6 0.4401 -0.1969 -3.5019 11 7 0.9092 0.3298 -2.3911 12 6 2.3874 2.0276 1.2618 13 1 2.3316 1.3128 2.0828 14 6 1.4633 3.2358 1.5384 15 6 2.2968 4.4350 1.0209 16 7 3.6857 4.0744 1.4043 17 6 4.6640 4.8225 0.6035 18 6 4.3559 6.2955 0.6818 19 8 3.4138 6.6840 1.3396 20 7 5.1266 7.1813 0.0201 21 6 4.8461 8.5215 0.0909 22 1 4.0077 8.8673 0.6773 23 6 5.6410 9.4346 -0.5909 24 7 6.6614 9.0137 -1.3040 25 14 5.2592 11.2606 -0.4938 26 1 5.9885 11.8586 0.6531 27 1 5.6866 11.9233 -1.7522 28 1 3.7985 11.4515 -0.3054 29 6 3.8055 2.6199 1.1643 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.3729 3.0211 -3.6998 36 1 1.4620 1.9536 -5.7551 37 1 -0.1187 -1.1196 -3.4493 38 1 0.5315 3.1444 0.9806 39 1 1.2644 3.3328 2.6057 40 1 2.2080 4.5265 -0.0616 41 1 1.9893 5.3580 1.5125 42 1 5.6663 4.6399 0.9910 43 1 4.6104 4.4947 -0.4346 44 1 5.8798 6.8707 -0.5063 45 1 7.2162 9.6513 -1.7803 46 1 4.4485 2.1704 1.9209 47 1 4.2154 2.4401 0.1704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715046789.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = 11.410848 kcal Electronic energy + Delta-G solvation = -31532.873334 eV Core-core repulsion = 27330.981022 eV Total energy + Delta-G solvation = -4201.892312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.52041 -41.38519 -40.18088 -38.42162 -37.12831 -35.93848 -34.81060 -33.37379 -33.14472 -32.68243 -30.99317 -29.41546 -28.27591 -26.65923 -25.88756 -25.38127 -24.27256 -22.69502 -22.42482 -21.14558 -20.64741 -19.82464 -18.71121 -18.59271 -17.77739 -17.19553 -17.17974 -16.82682 -16.59147 -16.40831 -16.25241 -16.10383 -15.74708 -15.59896 -15.26421 -15.15395 -14.66488 -14.56287 -14.06988 -13.96173 -13.82956 -13.53919 -13.39530 -13.05199 -12.93723 -12.78377 -12.55644 -12.43673 -12.37030 -12.32784 -12.14795 -12.05671 -11.90412 -11.79225 -11.49142 -11.32646 -11.15942 -10.78789 -10.21607 -10.17431 -10.01007 -9.76334 -9.09779 -8.47133 -5.96147 -0.61815 -0.11710 1.36598 1.39078 1.52773 1.60128 1.74359 2.04250 2.28172 2.70535 2.78115 2.97831 3.18814 3.19302 3.33968 3.43223 3.66452 3.74784 3.79468 4.00790 4.09919 4.23073 4.35905 4.46735 4.48727 4.50242 4.54094 4.58204 4.60895 4.64713 4.70584 4.78986 4.88505 4.94797 5.11892 5.16333 5.24340 5.26635 5.31779 5.40183 5.60156 5.63903 5.75572 5.89724 6.00632 6.16629 6.27047 6.59913 6.85892 7.03902 7.11831 7.54126 8.10714 8.70806 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013764 B = 0.002869 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.736897 B = 9755.746477 C =11156.209433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.115 3.885 3 N -0.582 5.582 4 C 0.551 3.449 5 O -0.540 6.540 6 C 0.115 3.885 7 C -0.180 4.180 8 C 0.157 3.843 9 N -0.518 5.518 10 C 0.283 3.717 11 N -0.477 5.477 12 C 0.145 3.855 13 H 0.140 0.860 14 C -0.123 4.123 15 C 0.035 3.965 16 N -0.497 5.497 17 C 0.056 3.944 18 C 0.444 3.556 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.922 5.922 25 Si 0.995 3.005 26 H -0.269 1.269 27 H -0.269 1.269 28 H -0.273 1.273 29 C 0.030 3.970 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.204 0.796 37 H 0.236 0.764 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.057 0.943 44 H 0.394 0.606 45 H 0.278 0.722 46 H 0.099 0.901 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -25.840 -3.682 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 N -0.313 5.313 4 C 0.338 3.662 5 O -0.417 6.417 6 C -0.031 4.031 7 C -0.203 4.203 8 C -0.010 4.010 9 N -0.232 5.232 10 C -0.004 4.004 11 N -0.194 5.194 12 C 0.041 3.959 13 H 0.157 0.843 14 C -0.162 4.162 15 C -0.093 4.093 16 N -0.222 5.222 17 C -0.076 4.076 18 C 0.231 3.769 19 O -0.499 6.499 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.819 3.181 26 H -0.194 1.194 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.098 4.098 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.168 0.832 36 H 0.220 0.780 37 H 0.251 0.749 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.227 0.773 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.291 -25.634 -2.714 28.142 hybrid contribution 0.783 1.830 -1.349 2.405 sum -10.509 -23.804 -4.064 26.336 Atomic orbital electron populations 1.22114 0.94985 1.02904 1.00792 1.21972 0.95541 0.79144 1.03961 1.48129 1.62881 1.15476 1.04824 1.18305 0.79690 0.84425 0.83780 1.90813 1.43754 1.21330 1.85826 1.21564 0.94938 0.92583 0.94061 1.23095 1.01040 1.02589 0.93605 1.23792 0.88115 0.89470 0.99636 1.68447 1.14412 1.10715 1.29638 1.25838 0.93241 0.99360 0.81990 1.69062 1.08871 1.09428 1.32032 1.22094 0.92741 0.95321 0.85712 0.84280 1.22875 0.97380 0.93742 1.02174 1.23454 0.88178 0.98340 0.99283 1.64725 1.03132 1.03529 1.50789 1.21841 0.98116 0.90275 0.97359 1.20683 0.84479 0.88942 0.82777 1.90419 1.32336 1.81096 1.46090 1.41917 1.28476 1.06207 1.44541 1.19666 1.13805 0.82736 1.29967 0.90366 1.26082 0.95164 1.04729 0.95432 1.69694 1.17728 1.37252 1.31661 0.84901 0.78465 0.76560 0.78217 1.19447 1.19361 1.19817 1.23277 0.97477 0.88139 1.00917 0.89880 0.94111 0.92855 0.89006 0.88581 0.83197 0.77969 0.74852 0.91504 0.89104 0.93368 0.92027 0.88147 0.92487 0.77280 0.91294 0.88241 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.44 71.99 0.68 -1.15 16 2 C 0.11 1.48 5.71 86.38 0.49 1.97 16 3 N -0.58 -11.82 2.44 -795.65 -1.94 -13.76 16 4 C 0.55 14.36 6.82 86.97 0.59 14.96 16 5 O -0.54 -18.52 9.67 -3.66 -0.04 -18.56 16 6 C 0.12 2.47 6.48 41.99 0.27 2.74 16 7 C -0.18 -3.60 9.72 22.71 0.22 -3.38 16 8 C 0.16 2.37 11.31 84.76 0.96 3.32 16 9 N -0.52 -8.00 10.42 -200.09 -2.09 -10.08 16 10 C 0.28 3.60 12.28 180.92 2.22 5.82 16 11 N -0.48 -7.57 3.94 -189.16 -0.75 -8.32 16 12 C 0.14 3.16 3.57 45.87 0.16 3.32 16 13 H 0.14 1.99 7.74 -2.39 -0.02 1.97 16 14 C -0.12 -3.40 6.41 31.80 0.20 -3.20 16 15 C 0.03 1.38 4.64 86.65 0.40 1.78 16 16 N -0.50 -18.65 5.24 -887.59 -4.65 -23.30 16 17 C 0.06 2.33 5.40 85.55 0.46 2.79 16 18 C 0.44 23.47 7.49 87.65 0.66 24.12 16 19 O -0.61 -36.26 13.09 -3.09 -0.04 -36.30 16 20 N -0.57 -32.10 5.29 -306.99 -1.62 -33.73 16 21 C -0.33 -19.97 9.68 84.04 0.81 -19.15 16 22 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 23 C -0.01 -0.82 5.50 84.92 0.47 -0.36 16 24 N -0.92 -52.09 13.05 21.66 0.28 -51.81 16 25 Si 1.00 44.72 29.55 68.60 2.03 46.75 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 C 0.03 0.84 5.72 86.44 0.49 1.33 16 30 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.85 5.79 -2.39 -0.01 0.84 16 33 H 0.09 1.21 6.01 -2.39 -0.01 1.20 16 34 H 0.10 0.80 7.79 -2.39 -0.02 0.78 16 35 H 0.15 3.29 7.75 -2.91 -0.02 3.26 16 36 H 0.20 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.24 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 39 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.05 2.15 5.03 -2.39 -0.01 2.14 16 41 H 0.06 2.96 5.97 -2.38 -0.01 2.94 16 42 H 0.10 3.76 8.14 -2.38 -0.02 3.75 16 43 H 0.06 2.40 6.84 -2.39 -0.02 2.38 16 44 H 0.39 21.16 7.90 -92.71 -0.73 20.42 16 45 H 0.28 14.59 8.31 -92.70 -0.77 13.82 16 46 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.04 1.34 5.78 -2.39 -0.01 1.32 16 Total: -1.00 -77.92 371.13 0.58 -77.34 By element: Atomic # 1 Polarization: 36.53 SS G_CDS: 0.29 Total: 36.82 kcal Atomic # 6 Polarization: 25.83 SS G_CDS: 9.10 Total: 34.93 kcal Atomic # 7 Polarization: -130.22 SS G_CDS: -10.77 Total: -140.99 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.08 Total: -54.86 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -77.92 0.58 -77.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715046789.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.753 kcal (2) G-P(sol) polarization free energy of solvation -77.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds