Wall clock time and date at job start Wed Apr 1 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36932 * 120.00058 * 2 1 4 4 H 1.08010 * 120.00186 * 205.60305 * 3 2 1 5 5 C 1.38808 * 120.00252 * 25.60617 * 3 2 1 6 6 N 1.31622 * 119.99745 * 10.36544 * 5 3 2 7 7 Si 1.86802 * 120.00380 * 190.36904 * 5 3 2 8 8 H 1.48502 * 109.46938 * 59.99391 * 7 5 3 9 9 H 1.48491 * 109.47160 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46846 * 299.99554 * 7 5 3 11 11 C 1.46502 * 120.00097 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47262 * 270.00085 * 11 2 1 13 13 C 1.52991 * 109.47254 * 179.97438 * 12 11 2 14 14 C 1.53350 * 109.42401 * 295.12804 * 13 12 11 15 15 C 1.53191 * 109.15420 * 178.67372 * 14 13 12 16 16 N 1.46929 * 108.89150 * 54.57949 * 15 14 13 17 17 C 1.34773 * 120.63221 * 126.34275 * 16 15 14 18 18 O 1.21346 * 120.00064 * 351.43796 * 17 16 15 19 19 C 1.49444 * 120.00032 * 171.43595 * 17 16 15 20 20 O 1.21352 * 120.00262 * 354.22891 * 19 17 16 21 21 N 1.34773 * 120.00274 * 174.22661 * 19 17 16 22 22 C 1.46502 * 120.00631 * 180.02562 * 21 19 17 23 23 C 1.52997 * 109.47735 * 179.97438 * 22 21 19 24 24 F 1.39894 * 109.47372 * 300.00561 * 23 22 21 25 25 F 1.39902 * 109.46638 * 59.99734 * 23 22 21 26 26 C 1.46924 * 118.73499 * 306.32130 * 16 15 14 27 27 C 1.53046 * 109.45907 * 174.99820 * 13 12 11 28 28 H 1.09000 * 109.47398 * 266.31283 * 1 2 3 29 29 H 1.09006 * 109.47298 * 26.31166 * 1 2 3 30 30 H 1.09006 * 109.47707 * 146.31095 * 1 2 3 31 31 H 0.97000 * 119.99760 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47518 * 150.00164 * 11 2 1 33 33 H 1.09005 * 109.47362 * 29.99778 * 11 2 1 34 34 H 1.08997 * 109.46789 * 59.99633 * 12 11 2 35 35 H 1.08996 * 109.46720 * 300.00054 * 12 11 2 36 36 H 1.09003 * 109.46148 * 55.02560 * 13 12 11 37 37 H 1.09004 * 109.68326 * 58.70539 * 14 13 12 38 38 H 1.08998 * 109.47136 * 298.51797 * 14 13 12 39 39 H 1.09002 * 109.58711 * 294.72403 * 15 14 13 40 40 H 1.08999 * 109.58553 * 174.43495 * 15 14 13 41 41 H 0.97008 * 119.99764 * 359.97438 * 21 19 17 42 42 H 1.09000 * 109.46829 * 300.00258 * 22 21 19 43 43 H 1.09009 * 109.46789 * 59.99774 * 22 21 19 44 44 H 1.08998 * 109.47569 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.58584 * 173.39916 * 26 16 15 46 46 H 1.09003 * 109.58932 * 293.67874 * 26 16 15 47 47 H 1.09000 * 109.49670 * 61.44020 * 27 13 12 48 48 H 1.08994 * 109.52159 * 301.35087 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1501 1.2318 -0.4042 5 6 1.5579 2.3290 0.5195 6 7 0.4307 2.2384 1.1931 7 14 2.3611 3.9958 0.2627 8 1 2.4664 4.2756 -1.1919 9 1 1.5369 5.0475 0.9103 10 1 3.7185 3.9892 0.8650 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4418 13 6 3.2169 -3.0363 1.4412 14 6 2.3374 -4.1321 0.8267 15 6 3.1205 -5.4484 0.7988 16 7 3.5986 -5.7464 2.1558 17 6 3.3297 -6.9341 2.7333 18 8 2.5607 -7.7072 2.2010 19 6 3.9786 -7.2989 4.0291 20 8 4.8256 -6.5742 4.5088 21 7 3.6232 -8.4327 4.6652 22 6 4.2589 -8.7901 5.9358 23 6 3.6790 -10.1122 6.4421 24 9 2.3001 -9.9740 6.6333 25 9 3.9207 -11.1183 5.5005 26 6 4.3759 -4.7251 2.8710 27 6 3.5808 -3.4157 2.8785 28 1 -0.3634 -0.0661 1.0255 29 1 -0.3634 0.9212 -0.4555 30 1 -0.3635 -0.8551 -0.5700 31 1 0.0170 3.0373 1.5558 32 1 3.1499 -1.1382 -0.5143 33 1 1.6084 -2.0282 -0.5147 34 1 1.5000 -1.8416 1.9555 35 1 3.0415 -0.9517 1.9559 36 1 4.1278 -2.9299 0.8520 37 1 2.0591 -3.8527 -0.1895 38 1 1.4378 -4.2566 1.4295 39 1 3.9715 -5.3531 0.1243 40 1 2.4704 -6.2531 0.4556 41 1 2.9458 -9.0118 4.2820 42 1 5.3333 -8.8974 5.7869 43 1 4.0703 -8.0063 6.6695 44 1 4.1524 -10.3783 7.3872 45 1 4.5521 -5.0514 3.8960 46 1 5.3302 -4.5726 2.3669 47 1 2.6695 -3.5468 3.4620 48 1 4.1861 -2.6250 3.3217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715481524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:28 Heat of formation + Delta-G solvation = -143.431301 kcal Electronic energy + Delta-G solvation = -30810.641413 eV Core-core repulsion = 26151.345455 eV Total energy + Delta-G solvation = -4659.295958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -49.61123 -47.59968 -41.23836 -39.20686 -37.95840 -36.08498 -35.47172 -33.75716 -31.26936 -31.15189 -30.45928 -28.86063 -26.09719 -25.69716 -24.68537 -23.49787 -22.87302 -21.98518 -20.97523 -20.20304 -19.58938 -18.27012 -18.16241 -18.03077 -17.15090 -16.68522 -16.58556 -16.38400 -15.92362 -15.09852 -15.00993 -14.82146 -14.62518 -14.42866 -14.29633 -13.95898 -13.89336 -13.70861 -13.69210 -13.42803 -13.12819 -13.06322 -12.90950 -12.38663 -12.23446 -11.93350 -11.80163 -11.66068 -11.20916 -11.16813 -10.89905 -10.87302 -10.61461 -10.54465 -10.28868 -10.19493 -10.01623 -9.95429 -9.85360 -9.60866 -9.32975 -8.86254 -8.47208 -6.64486 -5.69864 -3.15312 1.05885 1.87108 2.85108 2.98045 3.08223 3.40492 3.45677 3.46623 3.50850 3.86716 3.92916 4.10739 4.53503 4.76764 4.79489 4.84601 4.93616 4.97483 5.09249 5.29143 5.34866 5.47340 5.51936 5.56013 5.71095 5.82187 5.87314 5.90617 6.00735 6.17024 6.18862 6.30047 6.37285 6.40028 6.52049 6.61732 6.64037 6.85048 6.99099 7.04098 7.19591 7.31448 7.42212 7.65541 7.74846 7.84162 8.48378 9.29607 9.93230 10.44170 11.37014 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.001805 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.774159 B =15505.166203 C =15712.067931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.065 0.935 5 C 0.000 4.000 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.152 3.848 12 C -0.130 4.130 13 C -0.088 4.088 14 C -0.128 4.128 15 C 0.107 3.893 16 N -0.572 5.572 17 C 0.507 3.493 18 O -0.525 6.525 19 C 0.516 3.484 20 O -0.505 6.505 21 N -0.702 5.702 22 C 0.067 3.933 23 C 0.254 3.746 24 F -0.198 7.198 25 F -0.199 7.199 26 C 0.068 3.932 27 C -0.128 4.128 28 H 0.016 0.984 29 H 0.054 0.946 30 H -0.008 1.008 31 H 0.252 0.748 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.419 0.581 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 -25.714 10.067 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.382 4.382 4 H 0.083 0.917 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.025 3.975 12 C -0.170 4.170 13 C -0.107 4.107 14 C -0.166 4.166 15 C -0.015 4.015 16 N -0.305 5.305 17 C 0.288 3.712 18 O -0.402 6.402 19 C 0.298 3.702 20 O -0.381 6.381 21 N -0.357 5.357 22 C -0.057 4.057 23 C 0.200 3.800 24 F -0.180 7.180 25 F -0.181 7.181 26 C -0.053 4.053 27 C -0.167 4.167 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.011 0.989 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.256 0.744 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.149 0.851 45 H 0.152 0.848 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.918 -25.466 10.161 28.832 hybrid contribution -0.009 0.752 -0.144 0.766 sum 8.908 -24.714 10.017 28.116 Atomic orbital electron populations 1.20739 0.82858 0.96888 0.97579 1.43940 1.01785 1.00830 1.86065 1.19151 0.99752 0.86176 1.33084 0.91701 1.25086 0.97997 0.98690 0.98010 1.70043 1.19573 1.27665 1.38132 0.86349 0.78584 0.83926 0.77743 1.21105 1.21684 1.20967 1.20878 0.95387 0.87944 0.93285 1.22243 0.99351 0.93985 1.01437 1.21268 0.98706 0.95608 0.95132 1.22073 0.98634 0.93275 1.02603 1.21876 0.99304 0.98939 0.81372 1.48035 1.52089 1.13641 1.16695 1.19783 0.82689 0.83049 0.85642 1.90766 1.34529 1.50475 1.64476 1.20306 0.82941 0.81308 0.85663 1.90534 1.32017 1.48494 1.67079 1.45542 1.42986 1.24419 1.22720 1.22661 0.99946 0.95869 0.87254 1.22239 0.78632 0.86254 0.92836 1.93048 1.33066 1.96116 1.95750 1.93043 1.94038 1.62847 1.68141 1.22935 0.93624 0.87592 1.01153 1.22005 1.00484 0.96236 0.97939 0.96563 0.92773 0.98947 0.93763 0.94228 0.94641 0.92927 0.91887 0.91347 0.89825 0.91536 0.90795 0.88976 0.74381 0.87570 0.87503 0.85142 0.84823 0.91192 0.91835 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 9.03 59.84 0.54 4.68 16 2 N -0.60 -15.40 2.92 -181.12 -0.53 -15.93 16 3 C -0.25 -6.99 9.64 -15.06 -0.15 -7.13 16 4 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 5 C 0.00 0.01 5.09 -17.43 -0.09 -0.08 16 6 N -0.91 -26.84 10.78 55.49 0.60 -26.24 16 7 Si 0.90 22.02 29.57 -169.99 -5.03 17.00 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.15 3.09 5.47 -4.04 -0.02 3.07 16 12 C -0.13 -2.37 5.01 -26.73 -0.13 -2.50 16 13 C -0.09 -1.21 2.15 -90.42 -0.19 -1.40 16 14 C -0.13 -1.61 5.16 -26.45 -0.14 -1.75 16 15 C 0.11 1.21 6.43 -3.71 -0.02 1.19 16 16 N -0.57 -6.78 2.97 -173.28 -0.52 -7.30 16 17 C 0.51 6.18 7.73 -11.59 -0.09 6.09 16 18 O -0.53 -7.38 15.92 5.50 0.09 -7.30 16 19 C 0.52 5.35 7.75 -11.59 -0.09 5.26 16 20 O -0.51 -5.73 13.16 5.50 0.07 -5.66 16 21 N -0.70 -5.53 5.41 -60.73 -0.33 -5.86 16 22 C 0.07 0.31 5.91 -4.04 -0.02 0.28 16 23 C 0.25 0.94 5.42 37.16 0.20 1.14 16 24 F -0.20 -1.29 17.20 2.25 0.04 -1.25 16 25 F -0.20 -1.24 17.20 2.25 0.04 -1.21 16 26 C 0.07 0.77 5.99 -3.71 -0.02 0.74 16 27 C -0.13 -1.61 5.36 -26.61 -0.14 -1.76 16 28 H 0.02 0.43 7.78 -51.93 -0.40 0.03 16 29 H 0.05 1.47 6.85 -51.93 -0.36 1.12 16 30 H -0.01 -0.18 7.94 -51.93 -0.41 -0.59 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 33 H 0.04 0.66 6.32 -51.93 -0.33 0.33 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.04 6.52 -51.93 -0.34 0.70 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.08 7.00 -51.93 -0.36 0.72 16 41 H 0.42 3.35 7.85 -40.82 -0.32 3.03 16 42 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.13 -0.04 8.14 -51.93 -0.42 -0.46 16 45 H 0.13 1.55 4.28 -54.99 -0.24 1.31 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -33.35 390.89 -7.42 -40.77 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.37 Total: -0.75 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.37 Total: 7.83 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.77 Total: -55.32 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.16 Total: -12.96 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.35 -7.42 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715481524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.662 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds