Wall clock time and date at job start Wed Apr 1 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36932 * 120.00058 * 2 1 4 4 H 1.08010 * 120.00186 * 205.60305 * 3 2 1 5 5 C 1.38808 * 120.00252 * 25.60617 * 3 2 1 6 6 N 1.31622 * 119.99745 * 10.36544 * 5 3 2 7 7 Si 1.86802 * 120.00380 * 190.36904 * 5 3 2 8 8 H 1.48502 * 109.46938 * 59.99391 * 7 5 3 9 9 H 1.48491 * 109.47160 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46846 * 299.99554 * 7 5 3 11 11 C 1.46502 * 120.00097 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47262 * 270.00085 * 11 2 1 13 13 C 1.52991 * 109.47254 * 179.97438 * 12 11 2 14 14 C 1.53350 * 109.42401 * 295.12804 * 13 12 11 15 15 C 1.53191 * 109.15420 * 178.67372 * 14 13 12 16 16 N 1.46929 * 108.89150 * 54.57949 * 15 14 13 17 17 C 1.34773 * 120.63221 * 126.34275 * 16 15 14 18 18 O 1.21346 * 120.00064 * 351.43796 * 17 16 15 19 19 C 1.49444 * 120.00032 * 171.43595 * 17 16 15 20 20 O 1.21352 * 120.00262 * 354.22891 * 19 17 16 21 21 N 1.34773 * 120.00274 * 174.22661 * 19 17 16 22 22 C 1.46502 * 120.00631 * 180.02562 * 21 19 17 23 23 C 1.52997 * 109.47735 * 179.97438 * 22 21 19 24 24 F 1.39894 * 109.47372 * 300.00561 * 23 22 21 25 25 F 1.39902 * 109.46638 * 59.99734 * 23 22 21 26 26 C 1.46924 * 118.73499 * 306.32130 * 16 15 14 27 27 C 1.53046 * 109.45907 * 174.99820 * 13 12 11 28 28 H 1.09000 * 109.47398 * 266.31283 * 1 2 3 29 29 H 1.09006 * 109.47298 * 26.31166 * 1 2 3 30 30 H 1.09006 * 109.47707 * 146.31095 * 1 2 3 31 31 H 0.97000 * 119.99760 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47518 * 150.00164 * 11 2 1 33 33 H 1.09005 * 109.47362 * 29.99778 * 11 2 1 34 34 H 1.08997 * 109.46789 * 59.99633 * 12 11 2 35 35 H 1.08996 * 109.46720 * 300.00054 * 12 11 2 36 36 H 1.09003 * 109.46148 * 55.02560 * 13 12 11 37 37 H 1.09004 * 109.68326 * 58.70539 * 14 13 12 38 38 H 1.08998 * 109.47136 * 298.51797 * 14 13 12 39 39 H 1.09002 * 109.58711 * 294.72403 * 15 14 13 40 40 H 1.08999 * 109.58553 * 174.43495 * 15 14 13 41 41 H 0.97008 * 119.99764 * 359.97438 * 21 19 17 42 42 H 1.09000 * 109.46829 * 300.00258 * 22 21 19 43 43 H 1.09009 * 109.46789 * 59.99774 * 22 21 19 44 44 H 1.08998 * 109.47569 * 179.97438 * 23 22 21 45 45 H 1.08999 * 109.58584 * 173.39916 * 26 16 15 46 46 H 1.09003 * 109.58932 * 293.67874 * 26 16 15 47 47 H 1.09000 * 109.49670 * 61.44020 * 27 13 12 48 48 H 1.08994 * 109.52159 * 301.35087 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1501 1.2318 -0.4042 5 6 1.5579 2.3290 0.5195 6 7 0.4307 2.2384 1.1931 7 14 2.3611 3.9958 0.2627 8 1 2.4664 4.2756 -1.1919 9 1 1.5369 5.0475 0.9103 10 1 3.7185 3.9892 0.8650 11 6 2.1974 -1.2687 -0.0006 12 6 2.4525 -1.7111 1.4418 13 6 3.2169 -3.0363 1.4412 14 6 2.3374 -4.1321 0.8267 15 6 3.1205 -5.4484 0.7988 16 7 3.5986 -5.7464 2.1558 17 6 3.3297 -6.9341 2.7333 18 8 2.5607 -7.7072 2.2010 19 6 3.9786 -7.2989 4.0291 20 8 4.8256 -6.5742 4.5088 21 7 3.6232 -8.4327 4.6652 22 6 4.2589 -8.7901 5.9358 23 6 3.6790 -10.1122 6.4421 24 9 2.3001 -9.9740 6.6333 25 9 3.9207 -11.1183 5.5005 26 6 4.3759 -4.7251 2.8710 27 6 3.5808 -3.4157 2.8785 28 1 -0.3634 -0.0661 1.0255 29 1 -0.3634 0.9212 -0.4555 30 1 -0.3635 -0.8551 -0.5700 31 1 0.0170 3.0373 1.5558 32 1 3.1499 -1.1382 -0.5143 33 1 1.6084 -2.0282 -0.5147 34 1 1.5000 -1.8416 1.9555 35 1 3.0415 -0.9517 1.9559 36 1 4.1278 -2.9299 0.8520 37 1 2.0591 -3.8527 -0.1895 38 1 1.4378 -4.2566 1.4295 39 1 3.9715 -5.3531 0.1243 40 1 2.4704 -6.2531 0.4556 41 1 2.9458 -9.0118 4.2820 42 1 5.3333 -8.8974 5.7869 43 1 4.0703 -8.0063 6.6695 44 1 4.1524 -10.3783 7.3872 45 1 4.5521 -5.0514 3.8960 46 1 5.3302 -4.5726 2.3669 47 1 2.6695 -3.5468 3.4620 48 1 4.1861 -2.6250 3.3217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715481524.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:27 Heat of formation + Delta-G solvation = -165.221310 kcal Electronic energy + Delta-G solvation = -30811.586299 eV Core-core repulsion = 26151.345455 eV Total energy + Delta-G solvation = -4660.240843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.98728 -47.99624 -42.10576 -40.09675 -39.04735 -37.58999 -36.40708 -35.06857 -33.13113 -32.15133 -30.96947 -30.32971 -27.92190 -27.06843 -25.81620 -24.32556 -23.99386 -23.00693 -22.08943 -21.58110 -20.69099 -19.05634 -18.70803 -18.64904 -18.41124 -17.94591 -17.21954 -17.18753 -16.80938 -16.68014 -16.01637 -15.77647 -15.59239 -15.57817 -15.32377 -15.04694 -14.94227 -14.92261 -14.43508 -14.40130 -14.34592 -14.02797 -13.84423 -13.54049 -13.47259 -13.36684 -12.88025 -12.75568 -12.68328 -12.56747 -12.41389 -12.21100 -12.13293 -12.08326 -12.04677 -11.65042 -11.57055 -11.44115 -11.12669 -10.60928 -10.58757 -10.25158 -9.83168 -8.70650 -7.83205 -5.31008 0.20172 1.13469 1.46523 1.48960 1.55454 1.98376 2.30688 2.52374 2.67791 3.13357 3.29643 3.32135 3.55755 3.67728 3.81838 3.85510 3.89995 4.02226 4.11354 4.34103 4.41259 4.44908 4.48561 4.51438 4.56160 4.72502 4.75190 4.79148 4.85318 4.91639 5.00290 5.04025 5.06021 5.15548 5.20260 5.27643 5.31637 5.42997 5.53250 5.58256 5.66899 5.72156 5.78090 6.11503 6.38033 6.51880 6.77944 7.17632 7.90570 8.35769 9.22339 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.023849 B = 0.001805 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.774159 B =15505.166203 C =15712.067931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.622 5.622 3 C -0.260 4.260 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.969 3.031 8 H -0.277 1.277 9 H -0.296 1.296 10 H -0.274 1.274 11 C 0.148 3.852 12 C -0.114 4.114 13 C -0.077 4.077 14 C -0.122 4.122 15 C 0.109 3.891 16 N -0.575 5.575 17 C 0.501 3.499 18 O -0.549 6.549 19 C 0.517 3.483 20 O -0.517 6.517 21 N -0.696 5.696 22 C 0.062 3.938 23 C 0.253 3.747 24 F -0.216 7.216 25 F -0.215 7.215 26 C 0.077 3.923 27 C -0.125 4.125 28 H -0.009 1.009 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.247 0.753 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.418 0.582 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.179 0.821 45 H 0.136 0.864 46 H 0.084 0.916 47 H 0.050 0.950 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.799 -26.979 10.198 30.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.346 5.346 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.203 1.203 9 H -0.222 1.222 10 H -0.200 1.200 11 C 0.023 3.977 12 C -0.154 4.154 13 C -0.096 4.096 14 C -0.160 4.160 15 C -0.012 4.012 16 N -0.307 5.307 17 C 0.284 3.716 18 O -0.428 6.428 19 C 0.299 3.701 20 O -0.394 6.394 21 N -0.349 5.349 22 C -0.061 4.061 23 C 0.200 3.800 24 F -0.198 7.198 25 F -0.197 7.197 26 C -0.044 4.044 27 C -0.163 4.163 28 H 0.009 0.991 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.255 0.745 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.196 0.804 45 H 0.153 0.847 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.876 -26.775 10.297 30.679 hybrid contribution -0.621 1.067 -0.190 1.249 sum 10.255 -25.708 10.107 29.466 Atomic orbital electron populations 1.20492 0.83236 0.96777 0.96274 1.44229 1.02010 1.02097 1.86226 1.19501 0.99915 0.87305 1.32279 0.91234 1.25877 0.98773 1.02224 0.98291 1.70219 1.21053 1.28079 1.39468 0.85312 0.77761 0.79433 0.77765 1.20348 1.22224 1.20010 1.21079 0.95556 0.86419 0.94636 1.21981 0.98405 0.95726 0.99320 1.21155 0.98700 0.93363 0.96425 1.21992 0.97972 0.93618 1.02398 1.21874 0.99865 0.97796 0.81657 1.48145 1.51910 1.13762 1.16879 1.20174 0.82347 0.82869 0.86221 1.90749 1.35609 1.51171 1.65279 1.19968 0.82936 0.82022 0.85223 1.90522 1.32627 1.49054 1.67245 1.45634 1.42473 1.23327 1.23477 1.22979 1.00587 0.96748 0.85828 1.22734 0.77764 0.85307 0.94206 1.93012 1.34780 1.96160 1.95837 1.93011 1.94046 1.63514 1.69105 1.22892 0.93638 0.86369 1.01514 1.21947 1.00257 0.97260 0.96829 0.99073 0.95499 0.95702 0.94383 0.93419 0.92420 0.95120 0.94603 0.89903 0.89269 0.93050 0.88742 0.89293 0.74539 0.86146 0.86406 0.80401 0.84727 0.89761 0.93109 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 9.03 127.77 1.15 10.22 16 2 N -0.62 -31.77 2.92 -726.92 -2.12 -33.89 16 3 C -0.26 -14.41 9.64 84.03 0.81 -13.60 16 4 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 5 C -0.06 -3.25 5.09 84.86 0.43 -2.81 16 6 N -0.94 -56.87 10.78 21.65 0.23 -56.64 16 7 Si 0.97 45.51 29.57 68.60 2.03 47.54 16 8 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 C 0.15 5.88 5.47 86.38 0.47 6.35 16 12 C -0.11 -4.15 5.01 30.59 0.15 -4.00 16 13 C -0.08 -2.02 2.15 -10.66 -0.02 -2.04 16 14 C -0.12 -2.90 5.16 30.78 0.16 -2.74 16 15 C 0.11 2.29 6.43 86.36 0.56 2.84 16 16 N -0.57 -12.79 2.97 -820.49 -2.44 -15.23 16 17 C 0.50 11.78 7.73 87.27 0.67 12.45 16 18 O -0.55 -15.18 15.92 -3.23 -0.05 -15.23 16 19 C 0.52 10.13 7.75 87.27 0.68 10.81 16 20 O -0.52 -10.91 13.16 -3.25 -0.04 -10.95 16 21 N -0.70 -10.13 5.41 -464.41 -2.51 -12.64 16 22 C 0.06 0.44 5.91 86.38 0.51 0.95 16 23 C 0.25 1.32 5.42 71.98 0.39 1.71 16 24 F -0.22 -2.53 17.20 44.97 0.77 -1.76 16 25 F -0.22 -2.37 17.20 44.97 0.77 -1.60 16 26 C 0.08 1.59 5.99 86.36 0.52 2.11 16 27 C -0.12 -3.01 5.36 30.67 0.16 -2.84 16 28 H -0.01 -0.50 7.78 -2.39 -0.02 -0.52 16 29 H 0.03 1.48 6.85 -2.38 -0.02 1.46 16 30 H 0.02 1.08 7.94 -2.38 -0.02 1.06 16 31 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.05 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.06 2.02 6.32 -2.38 -0.02 2.01 16 34 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.02 6.52 -2.38 -0.02 2.01 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.96 7.00 -2.39 -0.02 1.95 16 41 H 0.42 6.41 7.85 -92.70 -0.73 5.68 16 42 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 44 H 0.18 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.14 2.90 4.28 -50.93 -0.22 2.69 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -72.86 390.89 3.34 -69.52 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.05 Total: 11.48 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.65 Total: 19.40 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -6.84 Total: -118.40 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.09 Total: -26.19 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 1.55 Total: -3.36 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -72.86 3.34 -69.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715481524.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.699 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds